Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:20:39 (975421): wrapper (7.7.26015): starting
06:20:39 (975421): wrapper: running run_atlas (--nthreads 4)
[2026-04-01 06:20:39] Arguments: --nthreads 4
[2026-04-01 06:20:39] Threads: 4
[2026-04-01 06:20:39] Checking for CVMFS
[2026-04-01 06:20:39] No cvmfs_config command found, will try listing directly
[2026-04-01 06:20:39] CVMFS is ok
[2026-04-01 06:20:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 06:20:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 06:20:39] Further information can be found at the LHC@home message board.
[2026-04-01 06:20:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 06:20:39] Checking for apptainer binary...
[2026-04-01 06:20:39] which: no apptainer in ((null))
[2026-04-01 06:20:39] apptainer is not installed, using version from CVMFS
[2026-04-01 06:20:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 06:20:40] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-04-01 06:20:40] apptainer works
[2026-04-01 06:20:40] Set ATHENA_PROC_NUMBER=4
[2026-04-01 06:20:40] Set ATHENA_CORE_NUMBER=4
[2026-04-01 06:20:40] Starting ATLAS job with PandaID=7071840661
[2026-04-01 06:20:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 12:25:50]  *** The last 200 lines of the pilot log: ***
[2026-04-01 12:25:50] 2026-04-01 10:24:43,284 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,285 | INFO     | reading metadata from: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7071840661/jobReport.json
[2026-04-01 12:25:50] 2026-04-01 10:24:43,288 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot124/slots/0/workernode_map.json
[2026-04-01 12:25:50] 2026-04-01 10:24:43,289 | INFO     | this job has now completed (state=finished)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,289 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,289 | INFO     | log transfer has been attempted: DONE
[2026-04-01 12:25:50] 2026-04-01 10:24:43,289 | INFO     | job 7071840661 has finished - writing final server update
[2026-04-01 12:25:50] 2026-04-01 10:24:43,289 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1121866/.job.ad'
[2026-04-01 12:25:50] 2026-04-01 10:24:43,290 | INFO     | total number of processed events: 400 (read)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,313 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7071840661/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,314 | INFO     | extracted standard info from prmon json
[2026-04-01 12:25:50] 2026-04-01 10:24:43,314 | INFO     | extracted standard memory fields from prmon json
[2026-04-01 12:25:50] 2026-04-01 10:24:43,314 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-01 12:25:50] 2026-04-01 10:24:43,314 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-01 12:25:50] 2026-04-01 10:24:43,314 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-01 12:25:50] 2026-04-01 10:24:43,321 | INFO     | fitting pss+swap vs Time
[2026-04-01 12:25:50] 2026-04-01 10:24:43,322 | INFO     | sum of square deviations: 14108461738.0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,325 | INFO     | sum of deviations: 39440645133.00001
[2026-04-01 12:25:50] 2026-04-01 10:24:43,325 | INFO     | mean x: 1775028158.0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,325 | INFO     | mean y: 2343622.75070028
[2026-04-01 12:25:50] 2026-04-01 10:24:43,325 | INFO     | intersect: -4959802993.999098
[2026-04-01 12:25:50] 2026-04-01 10:24:43,326 | INFO     | chi2: 1.3441928289943834
[2026-04-01 12:25:50] 2026-04-01 10:24:43,326 | INFO     | sum of square deviations: 13523929848.0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,330 | INFO     | sum of deviations: 38754352921.0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,330 | INFO     | mean x: 1775028005.5
[2026-04-01 12:25:50] 2026-04-01 10:24:43,330 | INFO     | mean y: 2343443.6875
[2026-04-01 12:25:50] 2026-04-01 10:24:43,330 | INFO     | intersect: -5084200374.785413
[2026-04-01 12:25:50] 2026-04-01 10:24:43,330 | INFO     | chi2: 1.344468122993819
[2026-04-01 12:25:50] 2026-04-01 10:24:43,330 | INFO     | current chi2=1.344468122993819 (change=-0.020480246099917176 %)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,331 | INFO     | right removable region: 351
[2026-04-01 12:25:50] 2026-04-01 10:24:43,331 | INFO     | sum of square deviations: 13523929848.0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,334 | INFO     | sum of deviations: -6451224091.999998
[2026-04-01 12:25:50] 2026-04-01 10:24:43,334 | INFO     | mean x: 1775028310.5
[2026-04-01 12:25:50] 2026-04-01 10:24:43,335 | INFO     | mean y: 2355507.897727273
[2026-04-01 12:25:50] 2026-04-01 10:24:43,335 | INFO     | intersect: 849084641.3214052
[2026-04-01 12:25:50] 2026-04-01 10:24:43,335 | INFO     | chi2: 0.020294871028182768
[2026-04-01 12:25:50] 2026-04-01 10:24:43,335 | INFO     | current chi2=0.020294871028182768 (change=98.49018157288 %)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,336 | INFO     | sum of square deviations: 12955770358.0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,339 | INFO     | sum of deviations: -7124102587.000001
[2026-04-01 12:25:50] 2026-04-01 10:24:43,339 | INFO     | mean x: 1775028463.0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,340 | INFO     | mean y: 2355683.5014409223
[2026-04-01 12:25:50] 2026-04-01 10:24:43,340 | INFO     | intersect: 978406085.43285
[2026-04-01 12:25:50] 2026-04-01 10:24:43,340 | INFO     | chi2: 0.01733276070930332
[2026-04-01 12:25:50] 2026-04-01 10:24:43,340 | INFO     | current chi2=0.01733276070930332 (change=14.595364093548907 %)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,340 | INFO     | left removable region: 20
[2026-04-01 12:25:50] 2026-04-01 10:24:43,341 | INFO     | sum of square deviations: 11244973630.0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,344 | INFO     | sum of deviations: -3333619317.000006
[2026-04-01 12:25:50] 2026-04-01 10:24:43,344 | INFO     | mean x: 1775028585.0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,344 | INFO     | mean y: 2354562.5317220544
[2026-04-01 12:25:50] 2026-04-01 10:24:43,344 | INFO     | intersect: 528569187.29498065
[2026-04-01 12:25:50] 2026-04-01 10:24:43,344 | INFO     | chi2: 0.015376179778510598
[2026-04-01 12:25:50] 2026-04-01 10:24:43,345 | INFO     | current memory leak: -0.30 B/s (using 331 data points, chi2=0.02)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,345 | INFO     | could have reported an average CPU frequency of 2718 MHz (16 samples)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,345 | INFO     | ..............................
[2026-04-01 12:25:50] 2026-04-01 10:24:43,346 | INFO     | . Timing measurements:
[2026-04-01 12:25:50] 2026-04-01 10:24:43,346 | INFO     | . get job = 0 s
[2026-04-01 12:25:50] 2026-04-01 10:24:43,346 | INFO     | . initial setup = 8 s
[2026-04-01 12:25:50] 2026-04-01 10:24:43,346 | INFO     | . payload setup = 17 s
[2026-04-01 12:25:50] 2026-04-01 10:24:43,346 | INFO     | . stage-in = 0 s
[2026-04-01 12:25:50] 2026-04-01 10:24:43,346 | INFO     | . payload execution = 21782 s
[2026-04-01 12:25:50] 2026-04-01 10:24:43,346 | INFO     | . stage-out = 1 s
[2026-04-01 12:25:50] 2026-04-01 10:24:43,346 | INFO     | . log creation = 0 s
[2026-04-01 12:25:50] 2026-04-01 10:24:43,346 | INFO     | ..............................
[2026-04-01 12:25:50] 2026-04-01 10:24:43,538 | INFO     | time since job start (21819s) is within the limit (345600.0s)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,598 | INFO     | 
[2026-04-01 12:25:50] 2026-04-01 10:24:43,598 | INFO     | job summary report
[2026-04-01 12:25:50] 2026-04-01 10:24:43,598 | INFO     | --------------------------------------------------
[2026-04-01 12:25:50] 2026-04-01 10:24:43,598 | INFO     | PanDA job id: 7071840661
[2026-04-01 12:25:50] 2026-04-01 10:24:43,598 | INFO     | task id: 49179468
[2026-04-01 12:25:50] 2026-04-01 10:24:43,598 | INFO     | errors: (none)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,598 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-01 12:25:50] 2026-04-01 10:24:43,598 | INFO     | pilot state: finished 
[2026-04-01 12:25:50] 2026-04-01 10:24:43,598 | INFO     | transexitcode: 0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | exeerrorcode: 0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | exeerrordiag: 
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | exitcode: 0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | exitmsg: OK
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | cpuconsumptiontime: 84111 s
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | nevents: 400
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | neventsw: 0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | pid: 1013370
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | pgrp: 1013370
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | corecount: 4
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | event service: False
[2026-04-01 12:25:50] 2026-04-01 10:24:43,599 | INFO     | sizes: {0: 2279822, 1: 2280283, 11: 2280283, 21803: 2315378, 21804: 2324456, 21807: 2324622}
[2026-04-01 12:25:50] 2026-04-01 10:24:43,600 | INFO     | --------------------------------------------------
[2026-04-01 12:25:50] 2026-04-01 10:24:43,600 | INFO     | 
[2026-04-01 12:25:50] 2026-04-01 10:24:43,600 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot124/slots/0
[2026-04-01 12:25:50] 2026-04-01 10:24:43,630 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,631 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,631 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,631 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,631 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,631 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,633 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 12:25:50] 2026-04-01 10:24:43,633 | INFO     | job 7071840661 has completed (purged errors)
[2026-04-01 12:25:50] 2026-04-01 10:24:43,633 | INFO     | overall cleanup function is called
[2026-04-01 12:25:50] 2026-04-01 10:24:44,642 | INFO     | --- collectZombieJob: --- 10, [1013370]
[2026-04-01 12:25:50] 2026-04-01 10:24:44,642 | INFO     | zombie collector waiting for pid 1013370
[2026-04-01 12:25:50] 2026-04-01 10:24:44,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 12:25:50] 2026-04-01 10:24:44,642 | INFO     | collected zombie processes
[2026-04-01 12:25:50] 2026-04-01 10:24:44,642 | INFO     | will attempt to kill all subprocesses of pid=1013370
[2026-04-01 12:25:50] 2026-04-01 10:24:45,485 | INFO     | process IDs to be killed: [1013370] (in reverse order)
[2026-04-01 12:25:50] 2026-04-01 10:24:45,800 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 12:25:50] 2026-04-01 10:24:45,800 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 12:25:50] 2026-04-01 10:24:45,831 | INFO     | did not find any defunct processes belonging to 1013370
[2026-04-01 12:25:50] 2026-04-01 10:24:45,860 | INFO     | did not find any defunct processes belonging to 1013370
[2026-04-01 12:25:50] 2026-04-01 10:24:45,860 | INFO     | ready for new job
[2026-04-01 12:25:50] 2026-04-01 10:24:45,860 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-01 12:25:50] 2026-04-01 10:24:45,863 | INFO     | **************************************
[2026-04-01 12:25:50] 2026-04-01 10:24:45,863 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-01 12:25:50] 2026-04-01 10:24:45,863 | INFO     | **************************************
[2026-04-01 12:25:50] 2026-04-01 10:24:45,863 | INFO     | 
[2026-04-01 12:25:50] 2026-04-01 10:24:45,871 | INFO     | architecture information:
[2026-04-01 12:25:50] 2026-04-01 10:24:45,871 | INFO     | executing command: cat /etc/os-release
[2026-04-01 12:25:50] 2026-04-01 10:24:45,895 | INFO     | cat /etc/os-release:
[2026-04-01 12:25:50] NAME="CentOS Linux"
[2026-04-01 12:25:50] VERSION="7 (Core)"
[2026-04-01 12:25:50] ID="centos"
[2026-04-01 12:25:50] ID_LIKE="rhel fedora"
[2026-04-01 12:25:50] VERSION_ID="7"
[2026-04-01 12:25:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 12:25:50] ANSI_COLOR="0;31"
[2026-04-01 12:25:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 12:25:50] HOME_URL="https://www.centos.org/"
[2026-04-01 12:25:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 12:25:50] 
[2026-04-01 12:25:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 12:25:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 12:25:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 12:25:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 12:25:50] 
[2026-04-01 12:25:50] 2026-04-01 10:24:45,896 | INFO     | **************************************
[2026-04-01 12:25:50] 2026-04-01 10:24:46,398 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-04-01 12:25:50] 2026-04-01 10:24:46,421 | INFO     | sufficient remaining disk space (241828888576 B)
[2026-04-01 12:25:50] 2026-04-01 10:24:46,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 12:25:50] 2026-04-01 10:24:46,422 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 12:25:50] 2026-04-01 10:24:46,422 | INFO     | update_server=False
[2026-04-01 12:25:50] 2026-04-01 10:24:46,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-01 12:25:50] 2026-04-01 10:24:46,422 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 12:25:50] 2026-04-01 10:24:46,423 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 12:25:50] 2026-04-01 10:24:46,423 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 12:25:50] 2026-04-01 10:24:46,424 | INFO     | aborting loop
[2026-04-01 12:25:50] 2026-04-01 10:24:46,745 | INFO     | all payload control threads have been joined
[2026-04-01 12:25:50] 2026-04-01 10:24:47,037 | INFO     | all data control threads have been joined
[2026-04-01 12:25:50] 2026-04-01 10:24:47,427 | INFO     | [job] retrieve thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:47,429 | INFO     | [job] job monitor thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:47,472 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:47,714 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:47,750 | INFO     | [payload] control thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:47,807 | INFO     | [payload] validate_post thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:47,859 | INFO     | all job control threads have been joined
[2026-04-01 12:25:50] 2026-04-01 10:24:48,042 | INFO     | [data] control thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:48,429 | INFO     | [data] copytool_out thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:48,433 | INFO     | [data] copytool_in thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:48,448 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 12:25:50] 2026-04-01 10:24:48,713 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:48,787 | INFO     | [job] validate thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:48,864 | INFO     | [job] control thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:49,027 | INFO     | [payload] failed_post thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:49,453 | INFO     | [job] queue monitor thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:50,429 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:24:56,896 | INFO     | job.realtimelogging is not enabled
[2026-04-01 12:25:50] 2026-04-01 10:24:57,901 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 12:25:50] 2026-04-01 10:25:17,540 | INFO     | PID=989015 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-01 12:25:50] 2026-04-01 10:25:17,540 | INFO     | .. there are 21 such processes running
[2026-04-01 12:25:50] 2026-04-01 10:25:17,540 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 12:25:50] 2026-04-01 10:25:17,540 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 12:25:50] 2026-04-01 10:25:17,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 12:25:50] 2026-04-01 10:25:40,105 | INFO     | [monitor] cgroup control has ended
[2026-04-01 12:25:50] 2026-04-01 10:25:42,181 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22865625859904)>', '<ExcThread(monitor, started 22865383790336)>']
[2026-04-01 12:25:50] 2026-04-01 10:25:42,669 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 12:25:50] 2026-04-01 10:25:42,669 | INFO     | [monitor] control thread has ended
[2026-04-01 12:25:50] 2026-04-01 10:25:47,182 | INFO     | all workflow threads have been joined
[2026-04-01 12:25:50] 2026-04-01 10:25:47,182 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 12:25:50] 2026-04-01 10:25:47,182 | INFO     | traces error code: 0
[2026-04-01 12:25:50] 2026-04-01 10:25:47,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 12:25:50] 2026-04-01 10:25:47,320 [wrapper] ==== pilot stdout END ====
[2026-04-01 12:25:50] 2026-04-01 10:25:47,324 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 12:25:50] 2026-04-01 10:25:47,328 [wrapper] pilotpid: 989015
[2026-04-01 12:25:50] 2026-04-01 10:25:47,333 [wrapper] Pilot exit status: 0
[2026-04-01 12:25:50] 2026-04-01 10:25:47,346 [wrapper] pandaids: 7071840661
[2026-04-01 12:25:50] 2026-04-01 10:25:47,536 [wrapper] cleanup supervisor_pilot 1725466 989016
[2026-04-01 12:25:50] 2026-04-01 10:25:47,540 [wrapper] Test setup, not cleaning
[2026-04-01 12:25:50] 2026-04-01 10:25:47,544 [wrapper] apfmon messages muted
[2026-04-01 12:25:50] 2026-04-01 10:25:47,548 [wrapper] ==== wrapper stdout END ====
[2026-04-01 12:25:50] 2026-04-01 10:25:47,551 [wrapper] ==== wrapper stderr END ====
[2026-04-01 12:25:50]  *** Error codes and diagnostics ***
[2026-04-01 12:25:50]     "exeErrorCode": 0,
[2026-04-01 12:25:50]     "exeErrorDiag": "",
[2026-04-01 12:25:50]     "pilotErrorCode": 0,
[2026-04-01 12:25:50]     "pilotErrorDiag": "",
[2026-04-01 12:25:50]  *** Listing of results directory ***
[2026-04-01 12:25:50] total 477084
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc    585013 Mar 28 03:21 pilot3.tar.gz
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc      5118 Mar 28 03:38 queuedata.json
[2026-04-01 12:25:50] -rwx------. 1 boinc boinc     36322 Mar 28 03:38 runpilot2-wrapper.sh
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc       100 Apr  1 06:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 12:25:50] -rwxr-xr-x. 1 boinc boinc      7986 Apr  1 06:20 run_atlas
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc       105 Apr  1 06:20 job.xml
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc      6624 Apr  1 06:20 init_data.xml
[2026-04-01 12:25:50] -rw-r--r--. 2 boinc boinc 240959316 Apr  1 06:20 EVNT.49131531._000010.pool.root.1
[2026-04-01 12:25:50] -rw-r--r--. 2 boinc boinc     15845 Apr  1 06:20 start_atlas.sh
[2026-04-01 12:25:50] drwxrwx--x. 2 boinc boinc      4096 Apr  1 06:20 shared
[2026-04-01 12:25:50] -rw-r--r--. 2 boinc boinc    597541 Apr  1 06:20 input.tar.gz
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc         0 Apr  1 06:20 boinc_lockfile
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc      2604 Apr  1 06:20 pandaJob.out
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc   1005014 Apr  1 06:20 agis_schedconf.cvmfs.json
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc       444 Apr  1 06:21 workernode_map.json
[2026-04-01 12:25:50] drwx------. 5 boinc boinc      4096 Apr  1 06:21 pilot3
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc 236667330 Apr  1 12:24 HITS.49179468._000486.pool.root.1
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc       531 Apr  1 12:24 boinc_task_state.xml
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc        95 Apr  1 12:24 pilot_heartbeat.json
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc      1042 Apr  1 12:24 memory_monitor_summary.json
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc   1511579 Apr  1 12:24 agis_ddmendpoints.agis.ALL.json
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc    500503 Apr  1 12:24 log.49179468._000486.job.log.tgz.1
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc      6344 Apr  1 12:24 heartbeat.json
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc      8192 Apr  1 12:25 boinc_mmap_file
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc        28 Apr  1 12:25 wrapper_checkpoint.txt
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc      4903 Apr  1 12:25 pilotlog.txt
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc   2984966 Apr  1 12:25 log.49179468._000486.job.log.1
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc       357 Apr  1 12:25 output.list
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc       620 Apr  1 12:25 runtime_log
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc   3502080 Apr  1 12:25 result.tar.gz
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc      9222 Apr  1 12:25 runtime_log.err
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc       667 Apr  1 12:25 HolLDmekYQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmTqIKDmOkxNym.diag
[2026-04-01 12:25:50] -rw-r--r--. 1 boinc boinc     21115 Apr  1 12:25 stderr.txt
[2026-04-01 12:25:50] HITS file was successfully produced:
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc 236667330 Apr  1 12:24 shared/HITS.pool.root.1
[2026-04-01 12:25:50]  *** Contents of shared directory: ***
[2026-04-01 12:25:50] total 470464
[2026-04-01 12:25:50] -rw-r--r--. 2 boinc boinc 240959316 Apr  1 06:20 ATLAS.root_0
[2026-04-01 12:25:50] -rw-r--r--. 2 boinc boinc     15845 Apr  1 06:20 start_atlas.sh
[2026-04-01 12:25:50] -rw-r--r--. 2 boinc boinc    597541 Apr  1 06:20 input.tar.gz
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc 236667330 Apr  1 12:24 HITS.pool.root.1
[2026-04-01 12:25:50] -rw-------. 1 boinc boinc   3502080 Apr  1 12:25 result.tar.gz
12:25:52 (975421): run_atlas exited; CPU time 85595.410444
12:25:52 (975421): called boinc_finish(0)

</stderr_txt>
]]>

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