Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:39:04 (3543605): wrapper (7.7.26015): starting
01:39:04 (3543605): wrapper: running run_atlas (--nthreads 4)
[2026-04-02 01:39:04] Arguments: --nthreads 4
[2026-04-02 01:39:04] Threads: 4
[2026-04-02 01:39:04] Checking for CVMFS
[2026-04-02 01:39:04] No cvmfs_config command found, will try listing directly
[2026-04-02 01:39:04] CVMFS is ok
[2026-04-02 01:39:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-02 01:39:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-02 01:39:04] Further information can be found at the LHC@home message board.
[2026-04-02 01:39:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-02 01:39:04] Checking for apptainer binary...
[2026-04-02 01:39:04] which: no apptainer in ((null))
[2026-04-02 01:39:04] apptainer is not installed, using version from CVMFS
[2026-04-02 01:39:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-02 01:39:04] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-04-02 01:39:04] apptainer works
[2026-04-02 01:39:04] Set ATHENA_PROC_NUMBER=4
[2026-04-02 01:39:04] Set ATHENA_CORE_NUMBER=4
[2026-04-02 01:39:04] Starting ATLAS job with PandaID=7063898820
[2026-04-02 01:39:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-02 05:03:06]  *** The last 200 lines of the pilot log: ***
[2026-04-02 05:03:06] 2026-04-02 02:54:50,551 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-02 05:03:06] 2026-04-02 02:54:50,551 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-02 05:03:06] 2026-04-02 02:54:50,554 | INFO     | fitting pss+swap vs Time
[2026-04-02 05:03:06] 2026-04-02 02:54:50,555 | INFO     | sum of square deviations: 2194675568.0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,556 | INFO     | sum of deviations: 12655654627.99999
[2026-04-02 05:03:06] 2026-04-02 02:54:50,556 | INFO     | mean x: 1775092629.5
[2026-04-02 05:03:06] 2026-04-02 02:54:50,556 | INFO     | mean y: 2322061.5104166665
[2026-04-02 05:03:06] 2026-04-02 02:54:50,557 | INFO     | intersect: -10233796469.727703
[2026-04-02 05:03:06] 2026-04-02 02:54:50,557 | INFO     | chi2: 1.3515656794433606
[2026-04-02 05:03:06] 2026-04-02 02:54:50,557 | INFO     | sum of square deviations: 2027639878.0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,558 | INFO     | sum of deviations: 12156561716.999998
[2026-04-02 05:03:06] 2026-04-02 02:54:50,558 | INFO     | mean x: 1775092477.0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,559 | INFO     | mean y: 2321608.9946524063
[2026-04-02 05:03:06] 2026-04-02 02:54:50,559 | INFO     | intersect: -10640111243.19297
[2026-04-02 05:03:06] 2026-04-02 02:54:50,559 | INFO     | chi2: 1.3521700759804838
[2026-04-02 05:03:06] 2026-04-02 02:54:50,559 | INFO     | current chi2=1.3521700759804838 (change=-0.04471825130778 %)
[2026-04-02 05:03:06] 2026-04-02 02:54:50,559 | INFO     | right removable region: 186
[2026-04-02 05:03:06] 2026-04-02 02:54:50,559 | INFO     | sum of square deviations: 2027639878.0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,561 | INFO     | sum of deviations: -10893396958.0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,561 | INFO     | mean x: 1775092782.0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,561 | INFO     | mean y: 2343255.1764705884
[2026-04-02 05:03:06] 2026-04-02 02:54:50,561 | INFO     | intersect: 9538943181.72741
[2026-04-02 05:03:06] 2026-04-02 02:54:50,561 | INFO     | chi2: 0.03350092858756746
[2026-04-02 05:03:06] 2026-04-02 02:54:50,561 | INFO     | current chi2=0.03350092858756746 (change=97.52132440937945 %)
[2026-04-02 05:03:06] 2026-04-02 02:54:50,562 | INFO     | sum of square deviations: 1869302025.5
[2026-04-02 05:03:06] 2026-04-02 02:54:50,563 | INFO     | sum of deviations: -9785950894.5
[2026-04-02 05:03:06] 2026-04-02 02:54:50,563 | INFO     | mean x: 1775092934.5
[2026-04-02 05:03:06] 2026-04-02 02:54:50,563 | INFO     | mean y: 2342170.313186813
[2026-04-02 05:03:06] 2026-04-02 02:54:50,563 | INFO     | intersect: 9295100672.270369
[2026-04-02 05:03:06] 2026-04-02 02:54:50,563 | INFO     | chi2: 0.030760737724786123
[2026-04-02 05:03:06] 2026-04-02 02:54:50,564 | INFO     | current chi2=0.030760737724786123 (change=8.179447490892086 %)
[2026-04-02 05:03:06] 2026-04-02 02:54:50,564 | INFO     | left removable region: 20
[2026-04-02 05:03:06] 2026-04-02 02:54:50,564 | INFO     | sum of square deviations: 1418361477.5
[2026-04-02 05:03:06] 2026-04-02 02:54:50,565 | INFO     | sum of deviations: -4498866296.499999
[2026-04-02 05:03:06] 2026-04-02 02:54:50,565 | INFO     | mean x: 1775093056.5
[2026-04-02 05:03:06] 2026-04-02 02:54:50,565 | INFO     | mean y: 2336507.174698795
[2026-04-02 05:03:06] 2026-04-02 02:54:50,565 | INFO     | intersect: 5632711028.566069
[2026-04-02 05:03:06] 2026-04-02 02:54:50,566 | INFO     | chi2: 0.01972538348674693
[2026-04-02 05:03:06] 2026-04-02 02:54:50,566 | INFO     | current memory leak: -3.17 B/s (using 166 data points, chi2=0.02)
[2026-04-02 05:03:06] 2026-04-02 02:54:50,566 | INFO     | could have reported an average CPU frequency of 2682 MHz (10 samples)
[2026-04-02 05:03:06] 2026-04-02 02:54:50,566 | INFO     | ..............................
[2026-04-02 05:03:06] 2026-04-02 02:54:50,567 | INFO     | . Timing measurements:
[2026-04-02 05:03:06] 2026-04-02 02:54:50,567 | INFO     | . get job = 0 s
[2026-04-02 05:03:06] 2026-04-02 02:54:50,567 | INFO     | . initial setup = 8 s
[2026-04-02 05:03:06] 2026-04-02 02:54:50,567 | INFO     | . payload setup = 16 s
[2026-04-02 05:03:06] 2026-04-02 02:54:50,567 | INFO     | . stage-in = 0 s
[2026-04-02 05:03:06] 2026-04-02 02:54:50,567 | INFO     | . payload execution = 11689 s
[2026-04-02 05:03:06] 2026-04-02 02:54:50,567 | INFO     | . stage-out = 1 s
[2026-04-02 05:03:06] 2026-04-02 02:54:50,567 | INFO     | . log creation = 0 s
[2026-04-02 05:03:06] 2026-04-02 02:54:50,567 | INFO     | ..............................
[2026-04-02 05:03:06] 2026-04-02 02:54:50,654 | INFO     | time since job start (11722s) is within the limit (345600.0s)
[2026-04-02 05:03:06] 2026-04-02 02:54:50,659 | INFO     | 
[2026-04-02 05:03:06] 2026-04-02 02:54:50,659 | INFO     | job summary report
[2026-04-02 05:03:06] 2026-04-02 02:54:50,659 | INFO     | --------------------------------------------------
[2026-04-02 05:03:06] 2026-04-02 02:54:50,659 | INFO     | PanDA job id: 7063898820
[2026-04-02 05:03:06] 2026-04-02 02:54:50,659 | INFO     | task id: 48967085
[2026-04-02 05:03:06] 2026-04-02 02:54:50,659 | INFO     | errors: (none)
[2026-04-02 05:03:06] 2026-04-02 02:54:50,659 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-02 05:03:06] 2026-04-02 02:54:50,659 | INFO     | pilot state: finished 
[2026-04-02 05:03:06] 2026-04-02 02:54:50,660 | INFO     | transexitcode: 0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,660 | INFO     | exeerrorcode: 0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,660 | INFO     | exeerrordiag: 
[2026-04-02 05:03:06] 2026-04-02 02:54:50,660 | INFO     | exitcode: 0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,660 | INFO     | exitmsg: OK
[2026-04-02 05:03:06] 2026-04-02 02:54:50,660 | INFO     | cpuconsumptiontime: 44734 s
[2026-04-02 05:03:06] 2026-04-02 02:54:50,660 | INFO     | nevents: 400
[2026-04-02 05:03:06] 2026-04-02 02:54:50,660 | INFO     | neventsw: 0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,661 | INFO     | pid: 3564164
[2026-04-02 05:03:06] 2026-04-02 02:54:50,661 | INFO     | pgrp: 3564164
[2026-04-02 05:03:06] 2026-04-02 02:54:50,661 | INFO     | corecount: 4
[2026-04-02 05:03:06] 2026-04-02 02:54:50,661 | INFO     | event service: False
[2026-04-02 05:03:06] 2026-04-02 02:54:50,661 | INFO     | sizes: {0: 2279717, 1: 2280234, 12: 2280234, 11708: 2310288, 11709: 2310287, 11710: 2319365, 11711: 2319743}
[2026-04-02 05:03:06] 2026-04-02 02:54:50,661 | INFO     | --------------------------------------------------
[2026-04-02 05:03:06] 2026-04-02 02:54:50,661 | INFO     | 
[2026-04-02 05:03:06] 2026-04-02 02:54:50,661 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot116/slots/0
[2026-04-02 05:03:06] 2026-04-02 02:54:50,690 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,691 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-02 05:03:06] 2026-04-02 02:54:50,692 | INFO     | job 7063898820 has completed (purged errors)
[2026-04-02 05:03:06] 2026-04-02 02:54:50,693 | INFO     | overall cleanup function is called
[2026-04-02 05:03:06] 2026-04-02 02:54:51,702 | INFO     | --- collectZombieJob: --- 10, [3564164]
[2026-04-02 05:03:06] 2026-04-02 02:54:51,702 | INFO     | zombie collector waiting for pid 3564164
[2026-04-02 05:03:06] 2026-04-02 02:54:51,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-02 05:03:06] 2026-04-02 02:54:51,702 | INFO     | collected zombie processes
[2026-04-02 05:03:06] 2026-04-02 02:54:51,703 | INFO     | will attempt to kill all subprocesses of pid=3564164
[2026-04-02 05:03:06] 2026-04-02 02:54:53,138 | WARNING  | process 3564164 can no longer be monitored (due to stat problems) - aborting
[2026-04-02 05:03:06] 2026-04-02 02:54:53,928 | INFO     | process IDs to be killed: [3564164] (in reverse order)
[2026-04-02 05:03:06] 2026-04-02 02:54:54,233 | INFO     | using path: /var/lib/boinc/var/slot116/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-02 05:03:06] 2026-04-02 02:54:54,234 | INFO     | using path: /var/lib/boinc/var/slot116/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-02 05:03:06] 2026-04-02 02:54:54,235 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-02 05:03:06] 2026-04-02 02:54:54,235 | WARNING  | maxPSS not found in memory monitor output
[2026-04-02 05:03:06] 2026-04-02 02:54:54,235 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7063898820/payload.stdout) since it has not been created yet
[2026-04-02 05:03:06] 2026-04-02 02:54:54,235 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/0
[2026-04-02 05:03:06] 2026-04-02 02:54:54,260 | INFO     | sufficient remaining disk space (256003538944 B)
[2026-04-02 05:03:06] 2026-04-02 02:54:54,261 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-02 05:03:06] 2026-04-02 02:54:54,261 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7063898820/HITS.48967085._027987.pool.root.1 since it does not exist
[2026-04-02 05:03:06] 2026-04-02 02:54:54,272 | WARNING  | found no corresponding commands to process id(s)
[2026-04-02 05:03:06] 2026-04-02 02:54:54,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-02 05:03:06] 2026-04-02 02:54:54,353 | INFO     | did not find any defunct processes belonging to 3564164
[2026-04-02 05:03:06] 2026-04-02 02:54:54,427 | INFO     | did not find any defunct processes belonging to 3564164
[2026-04-02 05:03:06] 2026-04-02 02:54:54,427 | INFO     | ready for new job
[2026-04-02 05:03:06] 2026-04-02 02:54:54,428 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-02 05:03:06] 2026-04-02 02:54:54,430 | INFO     | **************************************
[2026-04-02 05:03:06] 2026-04-02 02:54:54,430 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-02 05:03:06] 2026-04-02 02:54:54,431 | INFO     | **************************************
[2026-04-02 05:03:06] 2026-04-02 02:54:54,431 | INFO     | 
[2026-04-02 05:03:06] 2026-04-02 02:54:54,441 | INFO     | architecture information:
[2026-04-02 05:03:06] 2026-04-02 02:54:54,441 | INFO     | executing command: cat /etc/os-release
[2026-04-02 05:03:06] 2026-04-02 02:54:54,468 | INFO     | cat /etc/os-release:
[2026-04-02 05:03:06] NAME="CentOS Linux"
[2026-04-02 05:03:06] VERSION="7 (Core)"
[2026-04-02 05:03:06] ID="centos"
[2026-04-02 05:03:06] ID_LIKE="rhel fedora"
[2026-04-02 05:03:06] VERSION_ID="7"
[2026-04-02 05:03:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-02 05:03:06] ANSI_COLOR="0;31"
[2026-04-02 05:03:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-02 05:03:06] HOME_URL="https://www.centos.org/"
[2026-04-02 05:03:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-02 05:03:06] 
[2026-04-02 05:03:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-02 05:03:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-02 05:03:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-02 05:03:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-02 05:03:06] 
[2026-04-02 05:03:06] 2026-04-02 02:54:54,469 | INFO     | **************************************
[2026-04-02 05:03:06] 2026-04-02 02:54:54,971 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/0
[2026-04-02 05:03:06] 2026-04-02 02:54:55,002 | INFO     | sufficient remaining disk space (256005636096 B)
[2026-04-02 05:03:06] 2026-04-02 02:54:55,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-02 05:03:06] 2026-04-02 02:54:55,002 | INFO     | current server update state: UPDATING_FINAL
[2026-04-02 05:03:06] 2026-04-02 02:54:55,002 | INFO     | update_server=False
[2026-04-02 05:03:06] 2026-04-02 02:54:55,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-02 05:03:06] 2026-04-02 02:54:55,029 | INFO     | all job control threads have been joined
[2026-04-02 05:03:06] 2026-04-02 02:54:55,224 | INFO     | number of running child processes to parent process 3564164: 1
[2026-04-02 05:03:06] 2026-04-02 02:54:55,225 | INFO     | maximum number of monitored processes: 6
[2026-04-02 05:03:06] 2026-04-02 02:54:55,225 | INFO     | aborting job monitoring since job object (job id=7063898820) has expired
[2026-04-02 05:03:06] 2026-04-02 02:54:55,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-02 05:03:06] 2026-04-02 02:54:55,225 | INFO     | will abort loop
[2026-04-02 05:03:06] 2026-04-02 02:54:55,454 | INFO     | all data control threads have been joined
[2026-04-02 05:03:06] 2026-04-02 02:54:55,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-02 05:03:06] 2026-04-02 02:54:55,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-02 05:03:06] 2026-04-02 02:54:56,007 | INFO     | [job] retrieve thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:56,036 | INFO     | [job] control thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:56,198 | INFO     | [payload] validate_post thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:56,230 | INFO     | [job] job monitor thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:56,284 | INFO     | [job] validate thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:56,296 | INFO     | all payload control threads have been joined
[2026-04-02 05:03:06] 2026-04-02 02:54:56,459 | INFO     | [data] control thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:56,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-02 05:03:06] 2026-04-02 02:54:56,533 | INFO     | [job] create_data_payload thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:56,673 | INFO     | [job] queue monitor thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:56,818 | INFO     | [payload] validate_pre thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:56,933 | INFO     | [payload] execute_payloads thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:57,106 | INFO     | [payload] failed_post thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:57,263 | INFO     | [data] copytool_in thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:57,301 | INFO     | [payload] control thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:54:57,934 | INFO     | [data] copytool_out thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:55:00,529 | INFO     | [data] queue_monitor thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:55:05,693 | INFO     | job.realtimelogging is not enabled
[2026-04-02 05:03:06] 2026-04-02 02:55:06,698 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-02 05:03:06] 2026-04-02 02:55:24,707 | INFO     | PID=3551477 has CPU usage=17.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-02 05:03:06] 2026-04-02 02:55:24,710 | INFO     | .. there are 21 such processes running
[2026-04-02 05:03:06] 2026-04-02 02:55:24,711 | INFO     | found 0 job(s) in 20 queues
[2026-04-02 05:03:06] 2026-04-02 02:55:24,711 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-02 05:03:06] 2026-04-02 02:55:24,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-02 05:03:06] 2026-04-02 02:55:47,217 | INFO     | [monitor] cgroup control has ended
[2026-04-02 05:03:06] 2026-04-02 02:55:48,020 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23108671342400)>', '<ExcThread(monitor, started 23108422723328)>']
[2026-04-02 05:03:06] 2026-04-02 02:55:48,827 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-02 05:03:06] 2026-04-02 02:55:48,827 | INFO     | [monitor] control thread has ended
[2026-04-02 05:03:06] 2026-04-02 02:55:53,045 | INFO     | all workflow threads have been joined
[2026-04-02 05:03:06] 2026-04-02 02:55:53,045 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-02 05:03:06] 2026-04-02 02:55:53,045 | INFO     | traces error code: 0
[2026-04-02 05:03:06] 2026-04-02 02:55:53,046 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-02 05:03:06] 2026-04-02 02:55:53,182 [wrapper] ==== pilot stdout END ====
[2026-04-02 05:03:06] 2026-04-02 02:55:53,186 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-02 05:03:06] 2026-04-02 02:55:53,190 [wrapper] pilotpid: 3551477
[2026-04-02 05:03:06] 2026-04-02 02:55:53,193 [wrapper] Pilot exit status: 0
[2026-04-02 05:03:06] 2026-04-02 02:55:53,208 [wrapper] pandaids: 7063898820
[2026-04-02 05:03:06] 2026-04-02 02:55:53,427 [wrapper] cleanup supervisor_pilot 3976942 3551478
[2026-04-02 05:03:06] 2026-04-02 02:55:53,433 [wrapper] Test setup, not cleaning
[2026-04-02 05:03:06] 2026-04-02 02:55:53,437 [wrapper] apfmon messages muted
[2026-04-02 05:03:06] 2026-04-02 02:55:53,441 [wrapper] ==== wrapper stdout END ====
[2026-04-02 05:03:06] 2026-04-02 02:55:53,444 [wrapper] ==== wrapper stderr END ====
[2026-04-02 05:03:06]  *** Error codes and diagnostics ***
[2026-04-02 05:03:06]     "exeErrorCode": 0,
[2026-04-02 05:03:06]     "exeErrorDiag": "",
[2026-04-02 05:03:06]     "pilotErrorCode": 0,
[2026-04-02 05:03:06]     "pilotErrorDiag": "",
[2026-04-02 05:03:06]  *** Listing of results directory ***
[2026-04-02 05:03:06] total 413008
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc    585013 Mar 28 03:21 pilot3.tar.gz
[2026-04-02 05:03:06] -rwx------. 1 boinc boinc     36322 Mar 28 03:25 runpilot2-wrapper.sh
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc      5118 Mar 28 03:26 queuedata.json
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc       100 Apr  2 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-02 05:03:06] -rwxr-xr-x. 1 boinc boinc      7986 Apr  2 01:38 run_atlas
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc       105 Apr  2 01:38 job.xml
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc      6624 Apr  2 01:39 init_data.xml
[2026-04-02 05:03:06] -rw-r--r--. 2 boinc boinc 215412877 Apr  2 01:39 EVNT.48967083._000973.pool.root.1
[2026-04-02 05:03:06] -rw-r--r--. 2 boinc boinc     15845 Apr  2 01:39 start_atlas.sh
[2026-04-02 05:03:06] drwxrwx--x. 2 boinc boinc      4096 Apr  2 01:39 shared
[2026-04-02 05:03:06] -rw-r--r--. 2 boinc boinc    597536 Apr  2 01:39 input.tar.gz
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc         0 Apr  2 01:39 boinc_lockfile
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc      2565 Apr  2 01:39 pandaJob.out
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc   1005493 Apr  2 01:39 agis_schedconf.cvmfs.json
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc       443 Apr  2 01:39 workernode_map.json
[2026-04-02 05:03:06] drwx------. 5 boinc boinc      4096 Apr  2 01:39 pilot3
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc 199608362 Apr  2 04:54 HITS.48967085._027987.pool.root.1
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc       529 Apr  2 04:54 boinc_task_state.xml
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc      1027 Apr  2 04:54 memory_monitor_summary.json
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc   1511579 Apr  2 04:54 agis_ddmendpoints.agis.ALL.json
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc    357543 Apr  2 04:54 log.48967085._027987.job.log.tgz.1
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc      6352 Apr  2 04:54 heartbeat.json
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc        95 Apr  2 04:55 pilot_heartbeat.json
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc      5194 Apr  2 04:55 pilotlog.txt
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc   1625814 Apr  2 04:55 log.48967085._027987.job.log.1
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc       357 Apr  2 04:55 output.list
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc       620 Apr  2 04:55 runtime_log
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc   1996800 Apr  2 04:55 result.tar.gz
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc       666 Apr  2 04:55 vDPLDmBYYQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDm2PGKDmWfEmin.diag
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc      9222 Apr  2 04:55 runtime_log.err
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc        27 Apr  2 05:02 wrapper_checkpoint.txt
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc      8192 Apr  2 05:03 boinc_mmap_file
[2026-04-02 05:03:06] -rw-r--r--. 1 boinc boinc     21324 Apr  2 05:03 stderr.txt
[2026-04-02 05:03:06] HITS file was successfully produced:
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc 199608362 Apr  2 04:54 shared/HITS.pool.root.1
[2026-04-02 05:03:06]  *** Contents of shared directory: ***
[2026-04-02 05:03:06] total 407856
[2026-04-02 05:03:06] -rw-r--r--. 2 boinc boinc 215412877 Apr  2 01:39 ATLAS.root_0
[2026-04-02 05:03:06] -rw-r--r--. 2 boinc boinc     15845 Apr  2 01:39 start_atlas.sh
[2026-04-02 05:03:06] -rw-r--r--. 2 boinc boinc    597536 Apr  2 01:39 input.tar.gz
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc 199608362 Apr  2 04:54 HITS.pool.root.1
[2026-04-02 05:03:06] -rw-------. 1 boinc boinc   1996800 Apr  2 04:55 result.tar.gz
05:03:07 (3543605): run_atlas exited; CPU time 45528.699950
05:03:07 (3543605): called boinc_finish(0)

</stderr_txt>
]]>

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