Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
07:34:12 (2718056): wrapper (7.7.26015): starting
07:34:12 (2718056): wrapper: running run_atlas (--nthreads 12)
[2026-04-01 07:34:12] Arguments: --nthreads 12
[2026-04-01 07:34:12] Threads: 12
[2026-04-01 07:34:12] Checking for CVMFS
[2026-04-01 07:34:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-01 07:34:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-01 07:34:13] Running cvmfs_config stat atlas.cern.ch
[2026-04-01 07:34:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-01 07:34:13] 2.13.3.0 2686551 703 45320 157947 1 49 2726380 4096001 90 130560 0 125725 99.972 26826 10573 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-04-01 07:34:13] CVMFS is ok
[2026-04-01 07:34:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 07:34:13] Checking for apptainer binary...
[2026-04-01 07:34:13] apptainer is not installed, using version from CVMFS
[2026-04-01 07:34:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 07:34:13] g6400
[2026-04-01 07:34:13] apptainer works
[2026-04-01 07:34:13] Set ATHENA_PROC_NUMBER=12
[2026-04-01 07:34:13] Set ATHENA_CORE_NUMBER=12
[2026-04-01 07:34:13] Starting ATLAS job with PandaID=7071837521
[2026-04-01 07:34:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 19:00:37]  *** The last 200 lines of the pilot log: ***
[2026-04-01 19:00:37] 2026-04-01 18:59:52,668 | INFO     | total number of processed events: 400 (read)
[2026-04-01 19:00:37] 2026-04-01 18:59:52,686 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-7071837521/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 19:00:37] 2026-04-01 18:59:52,686 | INFO     | extracted standard info from prmon json
[2026-04-01 19:00:37] 2026-04-01 18:59:52,686 | INFO     | extracted standard memory fields from prmon json
[2026-04-01 19:00:37] 2026-04-01 18:59:52,687 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-01 19:00:37] 2026-04-01 18:59:52,693 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-01 19:00:37] 2026-04-01 18:59:52,693 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-01 19:00:37] 2026-04-01 18:59:52,720 | INFO     | fitting pss+swap vs Time
[2026-04-01 19:00:37] 2026-04-01 18:59:52,722 | INFO     | sum of square deviations: 94941648886.48679
[2026-04-01 19:00:37] 2026-04-01 18:59:52,748 | INFO     | sum of deviations: 106566489377.82788
[2026-04-01 19:00:37] 2026-04-01 18:59:52,749 | INFO     | mean x: 1775049404.504451
[2026-04-01 19:00:37] 2026-04-01 18:59:52,749 | INFO     | mean y: 2694362.224035608
[2026-04-01 19:00:37] 2026-04-01 18:59:52,749 | INFO     | intersect: -1989695550.1989715
[2026-04-01 19:00:37] 2026-04-01 18:59:52,751 | INFO     | chi2: 2.022182500291244
[2026-04-01 19:00:37] 2026-04-01 18:59:52,753 | INFO     | sum of square deviations: 92844336058.98663
[2026-04-01 19:00:37] 2026-04-01 18:59:52,780 | INFO     | sum of deviations: 151247661634.6502
[2026-04-01 19:00:37] 2026-04-01 18:59:52,780 | INFO     | mean x: 1775049252.0044844
[2026-04-01 19:00:37] 2026-04-01 18:59:52,780 | INFO     | mean y: 2697590.783258595
[2026-04-01 19:00:37] 2026-04-01 18:59:52,780 | INFO     | intersect: -2888938668.8744693
[2026-04-01 19:00:37] 2026-04-01 18:59:52,782 | INFO     | chi2: 1.3136240523429086
[2026-04-01 19:00:37] 2026-04-01 18:59:52,783 | INFO     | current chi2=1.3136240523429086 (change=35.03929283565086 %)
[2026-04-01 19:00:37] 2026-04-01 18:59:52,785 | INFO     | sum of square deviations: 90778140093.98619
[2026-04-01 19:00:37] 2026-04-01 18:59:52,806 | INFO     | sum of deviations: 148820218717.1475
[2026-04-01 19:00:37] 2026-04-01 18:59:52,807 | INFO     | mean x: 1775049099.504518
[2026-04-01 19:00:37] 2026-04-01 18:59:52,807 | INFO     | mean y: 2697411.6174698793
[2026-04-01 19:00:37] 2026-04-01 18:59:52,807 | INFO     | intersect: -2907289452.493642
[2026-04-01 19:00:37] 2026-04-01 18:59:52,810 | INFO     | chi2: 1.3136980482517795
[2026-04-01 19:00:37] 2026-04-01 18:59:52,810 | INFO     | current chi2=1.3136980482517795 (change=-0.005632959349285761 %)
[2026-04-01 19:00:37] 2026-04-01 18:59:52,810 | INFO     | right removable region: 663
[2026-04-01 19:00:37] 2026-04-01 18:59:52,812 | INFO     | sum of square deviations: 92844334228.98663
[2026-04-01 19:00:37] 2026-04-01 18:59:52,834 | INFO     | sum of deviations: 13891721073.112122
[2026-04-01 19:00:37] 2026-04-01 18:59:52,834 | INFO     | mean x: 1775049557.0044844
[2026-04-01 19:00:37] 2026-04-01 18:59:52,836 | INFO     | mean y: 2701078.2959641255
[2026-04-01 19:00:37] 2026-04-01 18:59:52,836 | INFO     | intersect: -262888562.05883723
[2026-04-01 19:00:37] 2026-04-01 18:59:52,838 | INFO     | chi2: 0.8957992656894095
[2026-04-01 19:00:37] 2026-04-01 18:59:52,838 | INFO     | current chi2=0.8957992656894095 (change=55.70136396886076 %)
[2026-04-01 19:00:37] 2026-04-01 18:59:52,839 | INFO     | sum of square deviations: 90778136433.9862
[2026-04-01 19:00:37] 2026-04-01 18:59:52,861 | INFO     | sum of deviations: -22056532966.194283
[2026-04-01 19:00:37] 2026-04-01 18:59:52,861 | INFO     | mean x: 1775049709.504518
[2026-04-01 19:00:37] 2026-04-01 18:59:52,861 | INFO     | mean y: 2703731.564759036
[2026-04-01 19:00:37] 2026-04-01 18:59:52,861 | INFO     | intersect: 433990867.1273059
[2026-04-01 19:00:37] 2026-04-01 18:59:52,863 | INFO     | chi2: 0.8115621178201101
[2026-04-01 19:00:37] 2026-04-01 18:59:52,864 | INFO     | current chi2=0.8115621178201101 (change=9.403574114840364 %)
[2026-04-01 19:00:37] 2026-04-01 18:59:52,864 | INFO     | left removable region: 20
[2026-04-01 19:00:37] 2026-04-01 18:59:52,866 | INFO     | sum of square deviations: 82434697769.99399
[2026-04-01 19:00:37] 2026-04-01 18:59:52,891 | INFO     | sum of deviations: 37706080566.42303
[2026-04-01 19:00:37] 2026-04-01 18:59:52,891 | INFO     | mean x: 1775049679.0031104
[2026-04-01 19:00:37] 2026-04-01 18:59:52,891 | INFO     | mean y: 2705656.7884914465
[2026-04-01 19:00:37] 2026-04-01 18:59:52,892 | INFO     | intersect: -809211751.9783908
[2026-04-01 19:00:37] 2026-04-01 18:59:52,894 | INFO     | chi2: 0.0872374748969993
[2026-04-01 19:00:37] 2026-04-01 18:59:52,894 | INFO     | current memory leak: 0.46 B/s (using 643 data points, chi2=0.09)
[2026-04-01 19:00:37] 2026-04-01 18:59:52,896 | INFO     | could have reported an average CPU frequency of 3999 MHz (26 samples)
[2026-04-01 19:00:37] 2026-04-01 18:59:52,896 | INFO     | ..............................
[2026-04-01 19:00:37] 2026-04-01 18:59:52,896 | INFO     | . Timing measurements:
[2026-04-01 19:00:37] 2026-04-01 18:59:52,897 | INFO     | . get job = 0 s
[2026-04-01 19:00:37] 2026-04-01 18:59:52,897 | INFO     | . initial setup = 2 s
[2026-04-01 19:00:37] 2026-04-01 18:59:52,897 | INFO     | . payload setup = 2 s
[2026-04-01 19:00:37] 2026-04-01 18:59:52,897 | INFO     | . stage-in = 0 s
[2026-04-01 19:00:37] 2026-04-01 18:59:52,897 | INFO     | . payload execution = 41106 s
[2026-04-01 19:00:37] 2026-04-01 18:59:52,898 | INFO     | . stage-out = 3 s
[2026-04-01 19:00:37] 2026-04-01 18:59:52,898 | INFO     | . log creation = 0 s
[2026-04-01 19:00:37] 2026-04-01 18:59:52,898 | INFO     | ..............................
[2026-04-01 19:00:37] 2026-04-01 18:59:53,153 | INFO     | 
[2026-04-01 19:00:37] 2026-04-01 18:59:53,153 | INFO     | job summary report
[2026-04-01 19:00:37] 2026-04-01 18:59:53,153 | INFO     | --------------------------------------------------
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | PanDA job id: 7071837521
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | task id: 49177153
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | errors: (none)
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | pilot state: finished 
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | transexitcode: 0
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | exeerrorcode: 0
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | exeerrordiag: 
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | exitcode: 0
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | exitmsg: OK
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | cpuconsumptiontime: 79152 s
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | nevents: 400
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | neventsw: 0
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | pid: 2726438
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | pgrp: 2726438
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | corecount: 12
[2026-04-01 19:00:37] 2026-04-01 18:59:53,154 | INFO     | event service: False
[2026-04-01 19:00:37] 2026-04-01 18:59:53,155 | INFO     | sizes: {0: 2280328, 11: 2280328, 41112: 2323313, 41113: 2323312, 41117: 2332412, 41119: 2332468, 41120: 2332790}
[2026-04-01 19:00:37] 2026-04-01 18:59:53,155 | INFO     | --------------------------------------------------
[2026-04-01 19:00:37] 2026-04-01 18:59:53,155 | INFO     | 
[2026-04-01 19:00:37] 2026-04-01 18:59:53,155 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/0
[2026-04-01 19:00:37] 2026-04-01 18:59:53,269 | INFO     | time since job start (41131s) is within the limit (345600.0s)
[2026-04-01 19:00:37] 2026-04-01 18:59:53,489 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,490 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,491 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 19:00:37] 2026-04-01 18:59:53,491 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,491 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 19:00:37] 2026-04-01 18:59:53,491 | INFO     | job 7071837521 has completed (purged errors)
[2026-04-01 19:00:37] 2026-04-01 18:59:53,491 | INFO     | overall cleanup function is called
[2026-04-01 19:00:37] 2026-04-01 18:59:54,497 | INFO     | --- collectZombieJob: --- 10, [2726438]
[2026-04-01 19:00:37] 2026-04-01 18:59:54,497 | INFO     | zombie collector waiting for pid 2726438
[2026-04-01 19:00:37] 2026-04-01 18:59:54,497 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 19:00:37] 2026-04-01 18:59:54,498 | INFO     | collected zombie processes
[2026-04-01 19:00:37] 2026-04-01 18:59:54,498 | INFO     | will attempt to kill all subprocesses of pid=2726438
[2026-04-01 19:00:37] 2026-04-01 18:59:54,640 | INFO     | process IDs to be killed: [2726438] (in reverse order)
[2026-04-01 19:00:37] 2026-04-01 18:59:54,734 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 19:00:37] 2026-04-01 18:59:54,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 19:00:37] 2026-04-01 18:59:54,735 | INFO     | did not find any defunct processes belonging to 2726438
[2026-04-01 19:00:37] 2026-04-01 18:59:54,736 | INFO     | did not find any defunct processes belonging to 2726438
[2026-04-01 19:00:37] 2026-04-01 18:59:54,736 | INFO     | ready for new job
[2026-04-01 19:00:37] 2026-04-01 18:59:54,736 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-01 19:00:37] 2026-04-01 18:59:54,743 | INFO     | **************************************
[2026-04-01 19:00:37] 2026-04-01 18:59:54,743 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-01 19:00:37] 2026-04-01 18:59:54,743 | INFO     | **************************************
[2026-04-01 19:00:37] 2026-04-01 18:59:54,743 | INFO     | 
[2026-04-01 19:00:37] 2026-04-01 18:59:54,761 | INFO     | architecture information:
[2026-04-01 19:00:37] 2026-04-01 18:59:54,765 | INFO     | executing command: cat /etc/os-release
[2026-04-01 19:00:37] 2026-04-01 18:59:54,797 | INFO     | cat /etc/os-release:
[2026-04-01 19:00:37] NAME="CentOS Linux"
[2026-04-01 19:00:37] VERSION="7 (Core)"
[2026-04-01 19:00:37] ID="centos"
[2026-04-01 19:00:37] ID_LIKE="rhel fedora"
[2026-04-01 19:00:37] VERSION_ID="7"
[2026-04-01 19:00:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 19:00:37] ANSI_COLOR="0;31"
[2026-04-01 19:00:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 19:00:37] HOME_URL="https://www.centos.org/"
[2026-04-01 19:00:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 19:00:37] 
[2026-04-01 19:00:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 19:00:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 19:00:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 19:00:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 19:00:37] 
[2026-04-01 19:00:37] 2026-04-01 18:59:54,798 | INFO     | **************************************
[2026-04-01 19:00:37] 2026-04-01 18:59:55,300 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/0
[2026-04-01 19:00:37] 2026-04-01 18:59:55,392 | INFO     | sufficient remaining disk space (189171499008 B)
[2026-04-01 19:00:37] 2026-04-01 18:59:55,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 19:00:37] 2026-04-01 18:59:55,393 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 19:00:37] 2026-04-01 18:59:55,393 | INFO     | update_server=False
[2026-04-01 19:00:37] 2026-04-01 18:59:55,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-01 19:00:37] 2026-04-01 18:59:55,473 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-01 19:00:37] 2026-04-01 18:59:55,473 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-01 19:00:37] 2026-04-01 18:59:55,474 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 19:00:37] 2026-04-01 18:59:55,474 | INFO     | will abort loop
[2026-04-01 19:00:37] 2026-04-01 18:59:55,557 | INFO     | all job control threads have been joined
[2026-04-01 19:00:37] 2026-04-01 18:59:55,953 | INFO     | all payload control threads have been joined
[2026-04-01 19:00:37] 2026-04-01 18:59:56,377 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 19:00:37] 2026-04-01 18:59:56,397 | INFO     | [job] retrieve thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:56,476 | INFO     | all data control threads have been joined
[2026-04-01 19:00:37] 2026-04-01 18:59:56,477 | INFO     | [job] job monitor thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:56,561 | INFO     | [job] control thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:56,573 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:56,958 | INFO     | [payload] control thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:57,077 | INFO     | [payload] validate_post thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:57,173 | INFO     | [data] copytool_in thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:57,177 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:57,278 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:57,481 | INFO     | [data] control thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:57,605 | INFO     | [job] validate thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:57,825 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:57,984 | INFO     | [payload] failed_post thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:58,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 19:00:37] 2026-04-01 18:59:58,385 | INFO     | [data] copytool_out thread has finished
[2026-04-01 19:00:37] 2026-04-01 18:59:58,663 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 19:00:37] 2026-04-01 18:59:59,158 | INFO     | [job] queue monitor thread has finished
[2026-04-01 19:00:37] 2026-04-01 19:00:02,673 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 19:00:37] 2026-04-01 19:00:26,514 | INFO     | PID=2722057 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-01 19:00:37] 2026-04-01 19:00:26,514 | INFO     | .. there are 2 such processes running
[2026-04-01 19:00:37] 2026-04-01 19:00:26,517 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 19:00:37] 2026-04-01 19:00:26,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 19:00:37] 2026-04-01 19:00:26,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 19:00:37] 2026-04-01 19:00:30,677 | INFO     | [monitor] cgroup control has ended
[2026-04-01 19:00:37] 2026-04-01 19:00:31,170 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660550182720)>', '<ExcThread(monitor, started 140659969222400)>']
[2026-04-01 19:00:37] 2026-04-01 19:00:31,541 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 19:00:37] 2026-04-01 19:00:31,542 | INFO     | [monitor] control thread has ended
[2026-04-01 19:00:37] 2026-04-01 19:00:36,193 | INFO     | all workflow threads have been joined
[2026-04-01 19:00:37] 2026-04-01 19:00:36,194 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 19:00:37] 2026-04-01 19:00:36,194 | INFO     | traces error code: 0
[2026-04-01 19:00:37] 2026-04-01 19:00:36,194 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 19:00:37] 2026-04-01 19:00:36,581 [wrapper] ==== pilot stdout END ====
[2026-04-01 19:00:37] 2026-04-01 19:00:36,631 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 19:00:37] 2026-04-01 19:00:36,685 [wrapper] pilotpid: 2722057
[2026-04-01 19:00:37] 2026-04-01 19:00:36,710 [wrapper] Pilot exit status: 0
[2026-04-01 19:00:37] 2026-04-01 19:00:36,873 [wrapper] pandaids: 7071837521
[2026-04-01 19:00:37] 2026-04-01 19:00:37,322 [wrapper] cleanup supervisor_pilot 2747724 2722058
[2026-04-01 19:00:37] 2026-04-01 19:00:37,346 [wrapper] Test setup, not cleaning
[2026-04-01 19:00:37] 2026-04-01 19:00:37,362 [wrapper] apfmon messages muted
[2026-04-01 19:00:37] 2026-04-01 19:00:37,382 [wrapper] ==== wrapper stdout END ====
[2026-04-01 19:00:37] 2026-04-01 19:00:37,398 [wrapper] ==== wrapper stderr END ====
[2026-04-01 19:00:37]  *** Error codes and diagnostics ***
[2026-04-01 19:00:37]     "exeErrorCode": 0,
[2026-04-01 19:00:37]     "exeErrorDiag": "",
[2026-04-01 19:00:37]     "pilotErrorCode": 0,
[2026-04-01 19:00:37]     "pilotErrorDiag": "",
[2026-04-01 19:00:37]  *** Listing of results directory ***
[2026-04-01 19:00:37] total 485272
[2026-04-01 19:00:37] -rwx------ 1 boinc boinc     36322 Mar 28 01:13 runpilot2-wrapper.sh
[2026-04-01 19:00:37] -rw-r--r-- 1 boinc boinc    585013 Mar 28 01:55 pilot3.tar.gz
[2026-04-01 19:00:37] -rw-r--r-- 1 boinc boinc      5118 Mar 28 02:10 queuedata.json
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc       100 Apr  1 07:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 19:00:37] -rwxr-xr-x 1 boinc boinc      7986 Apr  1 07:34 run_atlas
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc       105 Apr  1 07:34 job.xml
[2026-04-01 19:00:37] -rw-r--r-- 2 boinc boinc 240149050 Apr  1 07:34 EVNT.49136684._000005.pool.root.1
[2026-04-01 19:00:37] drwxrwx--x 2 boinc boinc      4096 Apr  1 07:34 shared
[2026-04-01 19:00:37] -rw-r--r-- 2 boinc boinc    597562 Apr  1 07:34 input.tar.gz
[2026-04-01 19:00:37] -rw-r--r-- 2 boinc boinc     15845 Apr  1 07:34 start_atlas.sh
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc      9478 Apr  1 07:34 init_data.xml
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc         0 Apr  1 07:34 boinc_setup_complete
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc         0 Apr  1 07:34 boinc_lockfile
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc      2630 Apr  1 07:34 pandaJob.out
[2026-04-01 19:00:37] -rw------- 1 boinc boinc   1004631 Apr  1 07:34 agis_schedconf.cvmfs.json
[2026-04-01 19:00:37] -rw------- 1 boinc boinc       419 Apr  1 07:34 workernode_map.json
[2026-04-01 19:00:37] drwx------ 5 boinc boinc      4096 Apr  1 07:34 pilot3
[2026-04-01 19:00:37] -rw------- 1 boinc boinc 239388130 Apr  1 18:58 HITS.49177153._000459.pool.root.1
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc       530 Apr  1 18:58 boinc_task_state.xml
[2026-04-01 19:00:37] -rw------- 1 boinc boinc      1024 Apr  1 18:59 memory_monitor_summary.json
[2026-04-01 19:00:37] -rw------- 1 boinc boinc   1511579 Apr  1 18:59 agis_ddmendpoints.agis.ALL.json
[2026-04-01 19:00:37] -rw------- 1 boinc boinc    880100 Apr  1 18:59 log.49177153._000459.job.log.tgz.1
[2026-04-01 19:00:37] -rw------- 1 boinc boinc      6301 Apr  1 18:59 heartbeat.json
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc        28 Apr  1 19:00 wrapper_checkpoint.txt
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc      8192 Apr  1 19:00 boinc_mmap_file
[2026-04-01 19:00:37] -rw------- 1 boinc boinc        95 Apr  1 19:00 pilot_heartbeat.json
[2026-04-01 19:00:37] -rw------- 1 boinc boinc      5029 Apr  1 19:00 pilotlog.txt
[2026-04-01 19:00:37] -rw------- 1 boinc boinc   5839401 Apr  1 19:00 log.49177153._000459.job.log.1
[2026-04-01 19:00:37] -rw------- 1 boinc boinc       357 Apr  1 19:00 output.list
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc       620 Apr  1 19:00 runtime_log
[2026-04-01 19:00:37] -rw------- 1 boinc boinc   6737920 Apr  1 19:00 result.tar.gz
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc      9160 Apr  1 19:00 runtime_log.err
[2026-04-01 19:00:37] -rw------- 1 boinc boinc       653 Apr  1 19:00 95qKDmGPXQ9nsSi4ap6QjLDmwznN0nGgGQJmrXlLDm67FKDmDz4dSo.diag
[2026-04-01 19:00:37] -rw-rw-r-- 1 boinc boinc     20936 Apr  1 19:00 stderr.txt
[2026-04-01 19:00:37] HITS file was successfully produced:
[2026-04-01 19:00:37] -rw------- 1 boinc boinc 239388130 Apr  1 18:58 shared/HITS.pool.root.1
[2026-04-01 19:00:37]  *** Contents of shared directory: ***
[2026-04-01 19:00:37] total 475492
[2026-04-01 19:00:37] -rw-r--r-- 2 boinc boinc 240149050 Apr  1 07:34 ATLAS.root_0
[2026-04-01 19:00:37] -rw-r--r-- 2 boinc boinc    597562 Apr  1 07:34 input.tar.gz
[2026-04-01 19:00:37] -rw-r--r-- 2 boinc boinc     15845 Apr  1 07:34 start_atlas.sh
[2026-04-01 19:00:37] -rw------- 1 boinc boinc 239388130 Apr  1 18:58 HITS.pool.root.1
[2026-04-01 19:00:37] -rw------- 1 boinc boinc   6737920 Apr  1 19:00 result.tar.gz
19:00:39 (2718056): run_atlas exited; CPU time 79305.258338
19:00:39 (2718056): called boinc_finish(0)

</stderr_txt>
]]>

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