Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:06:44 (2775922): wrapper (7.7.26015): starting
18:06:44 (2775922): wrapper: running run_atlas (--nthreads 4)
[2026-04-01 18:06:44] Arguments: --nthreads 4
[2026-04-01 18:06:44] Threads: 4
[2026-04-01 18:06:44] Checking for CVMFS
[2026-04-01 18:06:44] No cvmfs_config command found, will try listing directly
[2026-04-01 18:06:44] CVMFS is ok
[2026-04-01 18:06:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 18:06:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 18:06:44] Further information can be found at the LHC@home message board.
[2026-04-01 18:06:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 18:06:44] Checking for apptainer binary...
[2026-04-01 18:06:44] which: no apptainer in ((null))
[2026-04-01 18:06:44] apptainer is not installed, using version from CVMFS
[2026-04-01 18:06:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 18:06:44] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-04-01 18:06:44] apptainer works
[2026-04-01 18:06:44] Set ATHENA_PROC_NUMBER=4
[2026-04-01 18:06:44] Set ATHENA_CORE_NUMBER=4
[2026-04-01 18:06:44] Starting ATLAS job with PandaID=7071836700
[2026-04-01 18:06:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:28:07 (3067028): wrapper (7.7.26015): starting
19:28:07 (3067028): wrapper: running run_atlas (--nthreads 4)
[2026-04-01 19:28:07] Arguments: --nthreads 4
[2026-04-01 19:28:07] Threads: 4
[2026-04-01 19:28:07] This job has been restarted, cleaning up previous attempt
[2026-04-01 19:28:07] Checking for CVMFS
[2026-04-01 19:28:07] No cvmfs_config command found, will try listing directly
[2026-04-01 19:28:07] CVMFS is ok
[2026-04-01 19:28:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 19:28:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 19:28:07] Further information can be found at the LHC@home message board.
[2026-04-01 19:28:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 19:28:07] Checking for apptainer binary...
[2026-04-01 19:28:07] which: no apptainer in ((null))
[2026-04-01 19:28:07] apptainer is not installed, using version from CVMFS
[2026-04-01 19:28:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 19:28:08] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-04-01 19:28:08] apptainer works
[2026-04-01 19:28:08] Set ATHENA_PROC_NUMBER=4
[2026-04-01 19:28:08] Set ATHENA_CORE_NUMBER=4
[2026-04-01 19:28:08] Starting ATLAS job with PandaID=7071836700
[2026-04-01 19:28:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-02 00:18:53]  *** The last 200 lines of the pilot log: ***
[2026-04-02 00:18:53] 2026-04-01 22:18:19,059 | INFO     | job 7071836700 has state=finished
[2026-04-02 00:18:53] 2026-04-01 22:18:19,060 | INFO     | preparing for final server update for job 7071836700 in state='finished'
[2026-04-02 00:18:53] 2026-04-01 22:18:19,060 | INFO     | reading metadata from: /var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7071836700/jobReport.json
[2026-04-02 00:18:53] 2026-04-01 22:18:19,062 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot128/slots/0/workernode_map.json
[2026-04-02 00:18:53] 2026-04-01 22:18:19,063 | INFO     | this job has now completed (state=finished)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,063 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,063 | INFO     | log transfer has been attempted: DONE
[2026-04-02 00:18:53] 2026-04-01 22:18:19,063 | INFO     | job 7071836700 has finished - writing final server update
[2026-04-02 00:18:53] 2026-04-01 22:18:19,063 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3012752/.job.ad'
[2026-04-02 00:18:53] 2026-04-01 22:18:19,063 | INFO     | total number of processed events: 400 (read)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,088 | INFO     | using path: /var/lib/boinc/var/slot128/slots/0/PanDA_Pilot-7071836700/memory_monitor_summary.json (trf name=prmon)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,089 | INFO     | extracted standard info from prmon json
[2026-04-02 00:18:53] 2026-04-01 22:18:19,089 | INFO     | extracted standard memory fields from prmon json
[2026-04-02 00:18:53] 2026-04-01 22:18:19,089 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-02 00:18:53] 2026-04-01 22:18:19,089 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-02 00:18:53] 2026-04-01 22:18:19,089 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-02 00:18:53] 2026-04-01 22:18:19,094 | INFO     | fitting pss+swap vs Time
[2026-04-02 00:18:53] 2026-04-01 22:18:19,095 | INFO     | sum of square deviations: 7178069470.0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,097 | INFO     | sum of deviations: 29007755658.0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,097 | INFO     | mean x: 1775073188.0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,097 | INFO     | mean y: 2326822.0807017544
[2026-04-02 00:18:53] 2026-04-01 22:18:19,098 | INFO     | intersect: -7171034974.955667
[2026-04-02 00:18:53] 2026-04-01 22:18:19,098 | INFO     | chi2: 1.0873055077851705
[2026-04-02 00:18:53] 2026-04-01 22:18:19,099 | INFO     | sum of square deviations: 6806862510.0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,101 | INFO     | sum of deviations: 28359062595.5
[2026-04-02 00:18:53] 2026-04-01 22:18:19,101 | INFO     | mean x: 1775073035.5
[2026-04-02 00:18:53] 2026-04-01 22:18:19,101 | INFO     | mean y: 2326555.5178571427
[2026-04-02 00:18:53] 2026-04-01 22:18:19,101 | INFO     | intersect: -7393064089.052205
[2026-04-02 00:18:53] 2026-04-01 22:18:19,102 | INFO     | chi2: 1.0875809230984024
[2026-04-02 00:18:53] 2026-04-01 22:18:19,102 | INFO     | current chi2=1.0875809230984024 (change=-0.025330076161652892 %)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,102 | INFO     | right removable region: 279
[2026-04-02 00:18:53] 2026-04-01 22:18:19,102 | INFO     | sum of square deviations: 6806862510.0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,105 | INFO     | sum of deviations: 727068546.5
[2026-04-02 00:18:53] 2026-04-01 22:18:19,105 | INFO     | mean x: 1775073340.5
[2026-04-02 00:18:53] 2026-04-01 22:18:19,105 | INFO     | mean y: 2338314.625
[2026-04-02 00:18:53] 2026-04-01 22:18:19,105 | INFO     | intersect: -187264456.35975352
[2026-04-02 00:18:53] 2026-04-01 22:18:19,106 | INFO     | chi2: 0.001793571498337497
[2026-04-02 00:18:53] 2026-04-01 22:18:19,106 | INFO     | current chi2=0.001793571498337497 (change=99.83504438398451 %)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,106 | INFO     | sum of square deviations: 6448679050.0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,108 | INFO     | sum of deviations: 1344117798.0000002
[2026-04-02 00:18:53] 2026-04-01 22:18:19,108 | INFO     | mean x: 1775073493.0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,109 | INFO     | mean y: 2338049.9709090907
[2026-04-02 00:18:53] 2026-04-01 22:18:19,109 | INFO     | intersect: -367645919.8002844
[2026-04-02 00:18:53] 2026-04-01 22:18:19,109 | INFO     | chi2: 0.0014576275948361465
[2026-04-02 00:18:53] 2026-04-01 22:18:19,109 | INFO     | current chi2=0.0014576275948361465 (change=18.730443911087168 %)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,109 | INFO     | left removable region: 20
[2026-04-02 00:18:53] 2026-04-01 22:18:19,110 | INFO     | sum of square deviations: 5387301010.0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,112 | INFO     | sum of deviations: 2205061915.9999995
[2026-04-02 00:18:53] 2026-04-01 22:18:19,112 | INFO     | mean x: 1775073615.0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,112 | INFO     | mean y: 2337483.1505791508
[2026-04-02 00:18:53] 2026-04-01 22:18:19,112 | INFO     | intersect: -724213199.5136044
[2026-04-02 00:18:53] 2026-04-01 22:18:19,112 | INFO     | chi2: 0.0007562777969405836
[2026-04-02 00:18:53] 2026-04-01 22:18:19,113 | INFO     | current memory leak: 0.41 B/s (using 259 data points, chi2=0.00)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,113 | INFO     | could have reported an average CPU frequency of 2715 MHz (13 samples)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,113 | INFO     | ..............................
[2026-04-02 00:18:53] 2026-04-01 22:18:19,113 | INFO     | . Timing measurements:
[2026-04-02 00:18:53] 2026-04-01 22:18:19,113 | INFO     | . get job = 0 s
[2026-04-02 00:18:53] 2026-04-01 22:18:19,113 | INFO     | . initial setup = 1 s
[2026-04-02 00:18:53] 2026-04-01 22:18:19,113 | INFO     | . payload setup = 10 s
[2026-04-02 00:18:53] 2026-04-01 22:18:19,114 | INFO     | . stage-in = 0 s
[2026-04-02 00:18:53] 2026-04-01 22:18:19,114 | INFO     | . payload execution = 17371 s
[2026-04-02 00:18:53] 2026-04-01 22:18:19,114 | INFO     | . stage-out = 1 s
[2026-04-02 00:18:53] 2026-04-01 22:18:19,114 | INFO     | . log creation = 0 s
[2026-04-02 00:18:53] 2026-04-01 22:18:19,114 | INFO     | ..............................
[2026-04-02 00:18:53] 2026-04-01 22:18:19,214 | INFO     | 
[2026-04-02 00:18:53] 2026-04-01 22:18:19,214 | INFO     | job summary report
[2026-04-02 00:18:53] 2026-04-01 22:18:19,214 | INFO     | --------------------------------------------------
[2026-04-02 00:18:53] 2026-04-01 22:18:19,214 | INFO     | PanDA job id: 7071836700
[2026-04-02 00:18:53] 2026-04-01 22:18:19,214 | INFO     | task id: 49176352
[2026-04-02 00:18:53] 2026-04-01 22:18:19,214 | INFO     | errors: (none)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | pilot state: finished 
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | transexitcode: 0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | exeerrorcode: 0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | exeerrordiag: 
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | exitcode: 0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | exitmsg: OK
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | cpuconsumptiontime: 67336 s
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | nevents: 400
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | neventsw: 0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,215 | INFO     | pid: 3087579
[2026-04-02 00:18:53] 2026-04-01 22:18:19,216 | INFO     | pgrp: 3087579
[2026-04-02 00:18:53] 2026-04-01 22:18:19,216 | INFO     | corecount: 4
[2026-04-02 00:18:53] 2026-04-01 22:18:19,216 | INFO     | event service: False
[2026-04-02 00:18:53] 2026-04-01 22:18:19,216 | INFO     | sizes: {0: 2279861, 1: 2280322, 11: 2280322, 17386: 2312982, 17388: 2322060, 17389: 2322198}
[2026-04-02 00:18:53] 2026-04-01 22:18:19,216 | INFO     | --------------------------------------------------
[2026-04-02 00:18:53] 2026-04-01 22:18:19,216 | INFO     | 
[2026-04-02 00:18:53] 2026-04-01 22:18:19,216 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot128/slots/0
[2026-04-02 00:18:53] 2026-04-01 22:18:19,252 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,252 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,252 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,252 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,254 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,254 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,254 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,254 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,254 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-02 00:18:53] 2026-04-01 22:18:19,254 | INFO     | job 7071836700 has completed (purged errors)
[2026-04-02 00:18:53] 2026-04-01 22:18:19,254 | INFO     | overall cleanup function is called
[2026-04-02 00:18:53] 2026-04-01 22:18:20,263 | INFO     | --- collectZombieJob: --- 10, [3087579]
[2026-04-02 00:18:53] 2026-04-01 22:18:20,263 | INFO     | zombie collector waiting for pid 3087579
[2026-04-02 00:18:53] 2026-04-01 22:18:20,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-02 00:18:53] 2026-04-01 22:18:20,263 | INFO     | collected zombie processes
[2026-04-02 00:18:53] 2026-04-01 22:18:20,263 | INFO     | will attempt to kill all subprocesses of pid=3087579
[2026-04-02 00:18:53] 2026-04-01 22:18:21,059 | INFO     | process IDs to be killed: [3087579] (in reverse order)
[2026-04-02 00:18:53] 2026-04-01 22:18:21,386 | WARNING  | found no corresponding commands to process id(s)
[2026-04-02 00:18:53] 2026-04-01 22:18:21,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-02 00:18:53] 2026-04-01 22:18:21,417 | INFO     | did not find any defunct processes belonging to 3087579
[2026-04-02 00:18:53] 2026-04-01 22:18:21,443 | INFO     | did not find any defunct processes belonging to 3087579
[2026-04-02 00:18:53] 2026-04-01 22:18:21,444 | INFO     | ready for new job
[2026-04-02 00:18:53] 2026-04-01 22:18:21,444 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-02 00:18:53] 2026-04-01 22:18:21,447 | INFO     | **************************************
[2026-04-02 00:18:53] 2026-04-01 22:18:21,447 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-02 00:18:53] 2026-04-01 22:18:21,447 | INFO     | **************************************
[2026-04-02 00:18:53] 2026-04-01 22:18:21,448 | INFO     | 
[2026-04-02 00:18:53] 2026-04-01 22:18:21,456 | INFO     | architecture information:
[2026-04-02 00:18:53] 2026-04-01 22:18:21,456 | INFO     | executing command: cat /etc/os-release
[2026-04-02 00:18:53] 2026-04-01 22:18:21,480 | INFO     | cat /etc/os-release:
[2026-04-02 00:18:53] NAME="CentOS Linux"
[2026-04-02 00:18:53] VERSION="7 (Core)"
[2026-04-02 00:18:53] ID="centos"
[2026-04-02 00:18:53] ID_LIKE="rhel fedora"
[2026-04-02 00:18:53] VERSION_ID="7"
[2026-04-02 00:18:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-02 00:18:53] ANSI_COLOR="0;31"
[2026-04-02 00:18:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-02 00:18:53] HOME_URL="https://www.centos.org/"
[2026-04-02 00:18:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-02 00:18:53] 
[2026-04-02 00:18:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-02 00:18:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-02 00:18:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-02 00:18:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-02 00:18:53] 
[2026-04-02 00:18:53] 2026-04-01 22:18:21,480 | INFO     | **************************************
[2026-04-02 00:18:53] 2026-04-01 22:18:21,983 | INFO     | executing command: df -mP /var/lib/boinc/var/slot128/slots/0
[2026-04-02 00:18:53] 2026-04-01 22:18:22,010 | INFO     | sufficient remaining disk space (255330353152 B)
[2026-04-02 00:18:53] 2026-04-01 22:18:22,011 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-02 00:18:53] 2026-04-01 22:18:22,011 | INFO     | current server update state: UPDATING_FINAL
[2026-04-02 00:18:53] 2026-04-01 22:18:22,011 | INFO     | update_server=False
[2026-04-02 00:18:53] 2026-04-01 22:18:22,011 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-02 00:18:53] 2026-04-01 22:18:22,011 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-02 00:18:53] 2026-04-01 22:18:22,012 | INFO     | aborting loop
[2026-04-02 00:18:53] 2026-04-01 22:18:22,659 | INFO     | all data control threads have been joined
[2026-04-02 00:18:53] 2026-04-01 22:18:22,798 | INFO     | all job control threads have been joined
[2026-04-02 00:18:53] 2026-04-01 22:18:23,016 | INFO     | [job] retrieve thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,017 | INFO     | [job] job monitor thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,025 | INFO     | [payload] execute_payloads thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,051 | INFO     | all payload control threads have been joined
[2026-04-02 00:18:53] 2026-04-01 22:18:23,115 | INFO     | [data] copytool_in thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,278 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-02 00:18:53] 2026-04-01 22:18:23,500 | INFO     | [payload] validate_pre thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,595 | INFO     | [payload] validate_post thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,664 | INFO     | [data] control thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,703 | INFO     | [payload] failed_post thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,803 | INFO     | [job] control thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,843 | INFO     | [job] validate thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:23,844 | INFO     | [job] create_data_payload thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:24,056 | INFO     | [payload] control thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:24,158 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-02 00:18:53] 2026-04-01 22:18:24,227 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-02 00:18:53] 2026-04-01 22:18:25,233 | INFO     | [job] queue monitor thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:25,283 | INFO     | [data] copytool_out thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:28,164 | INFO     | [data] queue_monitor thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:32,551 | INFO     | job.realtimelogging is not enabled
[2026-04-02 00:18:53] 2026-04-01 22:18:33,556 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-02 00:18:53] 2026-04-01 22:18:47,707 | INFO     | [monitor] cgroup control has ended
[2026-04-02 00:18:53] 2026-04-01 22:18:48,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22502207842112)>', '<ExcThread(monitor, started 22501976721152)>']
[2026-04-02 00:18:53] 2026-04-01 22:18:51,048 | INFO     | PID=3077256 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-02 00:18:53] 2026-04-01 22:18:51,049 | INFO     | .. there are 22 such processes running
[2026-04-02 00:18:53] 2026-04-01 22:18:51,049 | INFO     | found 0 job(s) in 20 queues
[2026-04-02 00:18:53] 2026-04-01 22:18:51,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-02 00:18:53] 2026-04-01 22:18:51,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-02 00:18:53] 2026-04-01 22:18:51,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-02 00:18:53] 2026-04-01 22:18:51,049 | INFO     | [monitor] control thread has ended
[2026-04-02 00:18:53] 2026-04-01 22:18:53,184 | INFO     | all workflow threads have been joined
[2026-04-02 00:18:53] 2026-04-01 22:18:53,184 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-02 00:18:53] 2026-04-01 22:18:53,184 | INFO     | traces error code: 0
[2026-04-02 00:18:53] 2026-04-01 22:18:53,185 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-02 00:18:53] 2026-04-01 22:18:53,334 [wrapper] ==== pilot stdout END ====
[2026-04-02 00:18:53] 2026-04-01 22:18:53,338 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-02 00:18:53] 2026-04-01 22:18:53,343 [wrapper] pilotpid: 3077256
[2026-04-02 00:18:53] 2026-04-01 22:18:53,347 [wrapper] Pilot exit status: 0
[2026-04-02 00:18:53] 2026-04-01 22:18:53,363 [wrapper] pandaids: 7071836700 7071836700
[2026-04-02 00:18:53] 2026-04-01 22:18:53,575 [wrapper] cleanup supervisor_pilot 3519569 3077258
[2026-04-02 00:18:53] 2026-04-01 22:18:53,579 [wrapper] Test setup, not cleaning
[2026-04-02 00:18:53] 2026-04-01 22:18:53,583 [wrapper] apfmon messages muted
[2026-04-02 00:18:53] 2026-04-01 22:18:53,586 [wrapper] ==== wrapper stdout END ====
[2026-04-02 00:18:53] 2026-04-01 22:18:53,590 [wrapper] ==== wrapper stderr END ====
[2026-04-02 00:18:53]  *** Error codes and diagnostics ***
[2026-04-02 00:18:53]     "exeErrorCode": 0,
[2026-04-02 00:18:53]     "exeErrorDiag": "",
[2026-04-02 00:18:53]     "pilotErrorCode": 0,
[2026-04-02 00:18:53]     "pilotErrorDiag": "",
[2026-04-02 00:18:53]  *** Listing of results directory ***
[2026-04-02 00:18:53] total 638976
[2026-04-02 00:18:53] drwx------. 5 boinc boinc      4096 Mar 10 17:00 pilot3
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc    585013 Mar 28 01:55 pilot3.tar.gz
[2026-04-02 00:18:53] -rwx------. 1 boinc boinc     36322 Mar 28 02:14 runpilot2-wrapper.sh
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc      5118 Mar 28 02:32 queuedata.json
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc       100 Apr  1 18:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-02 00:18:53] -rwxr-xr-x. 1 boinc boinc      7986 Apr  1 18:06 run_atlas
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc       105 Apr  1 18:06 job.xml
[2026-04-02 00:18:53] -rw-r--r--. 3 boinc boinc 221513887 Apr  1 18:06 EVNT.49133629._000020.pool.root.1
[2026-04-02 00:18:53] -rw-r--r--. 3 boinc boinc 221513887 Apr  1 18:06 ATLAS.root_0
[2026-04-02 00:18:53] -rw-r--r--. 2 boinc boinc     15845 Apr  1 18:06 start_atlas.sh
[2026-04-02 00:18:53] drwxrwx--x. 2 boinc boinc      4096 Apr  1 18:06 shared
[2026-04-02 00:18:53] -rw-r--r--. 2 boinc boinc    597551 Apr  1 18:06 input.tar.gz
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc         0 Apr  1 18:06 boinc_lockfile
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc      2599 Apr  1 19:28 pandaJob.out
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc   1005501 Apr  1 19:28 agis_schedconf.cvmfs.json
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc       444 Apr  1 19:28 workernode_map.json
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc      6631 Apr  1 23:31 init_data.xml
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc 201681885 Apr  2 00:17 HITS.49176352._000661.pool.root.1
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc       530 Apr  2 00:17 boinc_task_state.xml
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc        96 Apr  2 00:17 pilot_heartbeat.json
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc      1027 Apr  2 00:18 memory_monitor_summary.json
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc   1511579 Apr  2 00:18 agis_ddmendpoints.agis.ALL.json
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc    448232 Apr  2 00:18 log.49176352._000661.job.log.tgz.1
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc      6344 Apr  2 00:18 heartbeat.json
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc      8192 Apr  2 00:18 boinc_mmap_file
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc        28 Apr  2 00:18 wrapper_checkpoint.txt
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc      4904 Apr  2 00:18 pilotlog.txt
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc   2382917 Apr  2 00:18 log.49176352._000661.job.log.1
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc       357 Apr  2 00:18 output.list
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc       620 Apr  2 00:18 runtime_log
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc   2846720 Apr  2 00:18 result.tar.gz
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc      9299 Apr  2 00:18 runtime_log.err
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc       791 Apr  2 00:18 NhOODmmQXQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmqYIKDmPb6QKm.diag
[2026-04-02 00:18:53] -rw-r--r--. 1 boinc boinc     23020 Apr  2 00:18 stderr.txt
[2026-04-02 00:18:53] HITS file was successfully produced:
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc 201681885 Apr  2 00:17 shared/HITS.pool.root.1
[2026-04-02 00:18:53]  *** Contents of shared directory: ***
[2026-04-02 00:18:53] total 416668
[2026-04-02 00:18:53] -rw-r--r--. 3 boinc boinc 221513887 Apr  1 18:06 ATLAS.root_0
[2026-04-02 00:18:53] -rw-r--r--. 2 boinc boinc     15845 Apr  1 18:06 start_atlas.sh
[2026-04-02 00:18:53] -rw-r--r--. 2 boinc boinc    597551 Apr  1 18:06 input.tar.gz
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc 201681885 Apr  2 00:17 HITS.pool.root.1
[2026-04-02 00:18:53] -rw-------. 1 boinc boinc   2846720 Apr  2 00:18 result.tar.gz
00:18:55 (3067028): run_atlas exited; CPU time 68471.868151
00:18:55 (3067028): called boinc_finish(0)

</stderr_txt>
]]>

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