Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:16:27 (3915200): wrapper (7.7.26015): starting
05:16:27 (3915200): wrapper: running run_atlas (--nthreads 4)
[2026-04-01 05:16:27] Arguments: --nthreads 4
[2026-04-01 05:16:27] Threads: 4
[2026-04-01 05:16:27] Checking for CVMFS
[2026-04-01 05:16:27] No cvmfs_config command found, will try listing directly
[2026-04-01 05:16:27] CVMFS is ok
[2026-04-01 05:16:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-01 05:16:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-01 05:16:27] Further information can be found at the LHC@home message board.
[2026-04-01 05:16:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-01 05:16:27] Checking for apptainer binary...
[2026-04-01 05:16:27] which: no apptainer in ((null))
[2026-04-01 05:16:27] apptainer is not installed, using version from CVMFS
[2026-04-01 05:16:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-01 05:16:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2026-04-01 05:16:27] apptainer works
[2026-04-01 05:16:27] Set ATHENA_PROC_NUMBER=4
[2026-04-01 05:16:27] Set ATHENA_CORE_NUMBER=4
[2026-04-01 05:16:27] Starting ATLAS job with PandaID=7069735578
[2026-04-01 05:16:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-01 13:13:38]  *** The last 200 lines of the pilot log: ***
[2026-04-01 13:13:38] 2026-04-01 11:12:49,912 | INFO     | preparing for final server update for job 7069735578 in state='finished'
[2026-04-01 13:13:38] 2026-04-01 11:12:49,913 | INFO     | reading metadata from: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7069735578/jobReport.json
[2026-04-01 13:13:38] 2026-04-01 11:12:49,916 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot52/slots/0/workernode_map.json
[2026-04-01 13:13:38] 2026-04-01 11:12:49,916 | INFO     | this job has now completed (state=finished)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,917 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,917 | INFO     | log transfer has been attempted: DONE
[2026-04-01 13:13:38] 2026-04-01 11:12:49,917 | INFO     | job 7069735578 has finished - writing final server update
[2026-04-01 13:13:38] 2026-04-01 11:12:49,917 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3400099/.job.ad'
[2026-04-01 13:13:38] 2026-04-01 11:12:49,917 | INFO     | total number of processed events: 400 (read)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,930 | INFO     | using path: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7069735578/memory_monitor_summary.json (trf name=prmon)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,931 | INFO     | extracted standard info from prmon json
[2026-04-01 13:13:38] 2026-04-01 11:12:49,931 | INFO     | extracted standard memory fields from prmon json
[2026-04-01 13:13:38] 2026-04-01 11:12:49,931 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-04-01 13:13:38] 2026-04-01 11:12:49,931 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-01 13:13:38] 2026-04-01 11:12:49,931 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-01 13:13:38] 2026-04-01 11:12:49,940 | INFO     | fitting pss+swap vs Time
[2026-04-01 13:13:38] 2026-04-01 11:12:49,940 | INFO     | sum of square deviations: 31784398737.0
[2026-04-01 13:13:38] 2026-04-01 11:12:49,946 | INFO     | sum of deviations: -50479815987.00001
[2026-04-01 13:13:38] 2026-04-01 11:12:49,946 | INFO     | mean x: 1775027676.5
[2026-04-01 13:13:38] 2026-04-01 11:12:49,946 | INFO     | mean y: 2362684.4444444445
[2026-04-01 13:13:38] 2026-04-01 11:12:49,946 | INFO     | intersect: 2821452364.9815145
[2026-04-01 13:13:38] 2026-04-01 11:12:49,947 | INFO     | chi2: 1.5240297710348907
[2026-04-01 13:13:38] 2026-04-01 11:12:49,948 | INFO     | sum of square deviations: 30776510072.0
[2026-04-01 13:13:38] 2026-04-01 11:12:49,953 | INFO     | sum of deviations: -50155657595.00001
[2026-04-01 13:13:38] 2026-04-01 11:12:49,953 | INFO     | mean x: 1775027524.0
[2026-04-01 13:13:38] 2026-04-01 11:12:49,953 | INFO     | mean y: 2362733.485961123
[2026-04-01 13:13:38] 2026-04-01 11:12:49,953 | INFO     | intersect: 2895077745.9148936
[2026-04-01 13:13:38] 2026-04-01 11:12:49,954 | INFO     | chi2: 1.5232546115601144
[2026-04-01 13:13:38] 2026-04-01 11:12:49,954 | INFO     | current chi2=1.5232546115601144 (change=0.05086248900832642 %)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,954 | INFO     | right removable region: 462
[2026-04-01 13:13:38] 2026-04-01 11:12:49,955 | INFO     | sum of square deviations: 30776510072.0
[2026-04-01 13:13:38] 2026-04-01 11:12:49,960 | INFO     | sum of deviations: -105159045824.0
[2026-04-01 13:13:38] 2026-04-01 11:12:49,960 | INFO     | mean x: 1775027829.0
[2026-04-01 13:13:38] 2026-04-01 11:12:49,960 | INFO     | mean y: 2370904.5593952485
[2026-04-01 13:13:38] 2026-04-01 11:12:49,960 | INFO     | intersect: 6067393623.899716
[2026-04-01 13:13:38] 2026-04-01 11:12:49,961 | INFO     | chi2: 0.27452462427008073
[2026-04-01 13:13:38] 2026-04-01 11:12:49,961 | INFO     | current chi2=0.27452462427008073 (change=81.98692509243666 %)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,962 | INFO     | sum of square deviations: 29790156694.5
[2026-04-01 13:13:38] 2026-04-01 11:12:49,967 | INFO     | sum of deviations: -96331902689.5
[2026-04-01 13:13:38] 2026-04-01 11:12:49,967 | INFO     | mean x: 1775027981.5
[2026-04-01 13:13:38] 2026-04-01 11:12:49,967 | INFO     | mean y: 2369536.198689956
[2026-04-01 13:13:38] 2026-04-01 11:12:49,967 | INFO     | intersect: 5742246118.202938
[2026-04-01 13:13:38] 2026-04-01 11:12:49,968 | INFO     | chi2: 0.266519696836984
[2026-04-01 13:13:38] 2026-04-01 11:12:49,968 | INFO     | current chi2=0.266519696836984 (change=2.915923281702181 %)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,968 | INFO     | left removable region: 20
[2026-04-01 13:13:38] 2026-04-01 11:12:49,969 | INFO     | sum of square deviations: 26775834130.5
[2026-04-01 13:13:38] 2026-04-01 11:12:49,968 | INFO     | monitor loop #2061: job 0:7069735578 is in state 'finished'
[2026-04-01 13:13:38] 2026-04-01 11:12:49,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,974 | INFO     | sum of deviations: -63366224007.50001
[2026-04-01 13:13:38] 2026-04-01 11:12:49,974 | INFO     | mean x: 1775028103.5
[2026-04-01 13:13:38] 2026-04-01 11:12:49,974 | INFO     | mean y: 2364426.169683258
[2026-04-01 13:13:38] 2026-04-01 11:12:49,974 | INFO     | intersect: 4203048814.8538823
[2026-04-01 13:13:38] 2026-04-01 11:12:49,975 | INFO     | chi2: 0.20091566595813584
[2026-04-01 13:13:38] 2026-04-01 11:12:49,975 | INFO     | current memory leak: -2.37 B/s (using 442 data points, chi2=0.20)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,976 | INFO     | could have reported an average CPU frequency of 2528 MHz (19 samples)
[2026-04-01 13:13:38] 2026-04-01 11:12:49,976 | INFO     | ..............................
[2026-04-01 13:13:38] 2026-04-01 11:12:49,976 | INFO     | . Timing measurements:
[2026-04-01 13:13:38] 2026-04-01 11:12:49,976 | INFO     | . get job = 0 s
[2026-04-01 13:13:38] 2026-04-01 11:12:49,977 | INFO     | . initial setup = 6 s
[2026-04-01 13:13:38] 2026-04-01 11:12:49,977 | INFO     | . payload setup = 10 s
[2026-04-01 13:13:38] 2026-04-01 11:12:49,977 | INFO     | . stage-in = 0 s
[2026-04-01 13:13:38] 2026-04-01 11:12:49,977 | INFO     | . payload execution = 28536 s
[2026-04-01 13:13:38] 2026-04-01 11:12:49,977 | INFO     | . stage-out = 1 s
[2026-04-01 13:13:38] 2026-04-01 11:12:49,977 | INFO     | . log creation = 0 s
[2026-04-01 13:13:38] 2026-04-01 11:12:49,977 | INFO     | ..............................
[2026-04-01 13:13:38] 2026-04-01 11:12:50,420 | INFO     | 
[2026-04-01 13:13:38] 2026-04-01 11:12:50,420 | INFO     | job summary report
[2026-04-01 13:13:38] 2026-04-01 11:12:50,429 | INFO     | --------------------------------------------------
[2026-04-01 13:13:38] 2026-04-01 11:12:50,429 | INFO     | PanDA job id: 7069735578
[2026-04-01 13:13:38] 2026-04-01 11:12:50,429 | INFO     | task id: 49176822
[2026-04-01 13:13:38] 2026-04-01 11:12:50,429 | INFO     | errors: (none)
[2026-04-01 13:13:38] 2026-04-01 11:12:50,429 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-01 13:13:38] 2026-04-01 11:12:50,429 | INFO     | pilot state: finished 
[2026-04-01 13:13:38] 2026-04-01 11:12:50,429 | INFO     | transexitcode: 0
[2026-04-01 13:13:38] 2026-04-01 11:12:50,429 | INFO     | exeerrorcode: 0
[2026-04-01 13:13:38] 2026-04-01 11:12:50,429 | INFO     | exeerrordiag: 
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | exitcode: 0
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | exitmsg: OK
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | cpuconsumptiontime: 111055 s
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | nevents: 400
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | neventsw: 0
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | pid: 3924164
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | pgrp: 3924164
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | corecount: 4
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | event service: False
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | sizes: {0: 2280231, 1: 2280291, 11: 2280319, 28550: 2317194, 28553: 2326408}
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | --------------------------------------------------
[2026-04-01 13:13:38] 2026-04-01 11:12:50,430 | INFO     | 
[2026-04-01 13:13:38] 2026-04-01 11:12:50,431 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/0
[2026-04-01 13:13:38] 2026-04-01 11:12:50,459 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,459 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,459 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,461 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,461 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,461 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,461 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-01 13:13:38] 2026-04-01 11:12:50,461 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,461 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-01 13:13:38] 2026-04-01 11:12:50,461 | INFO     | job 7069735578 has completed (purged errors)
[2026-04-01 13:13:38] 2026-04-01 11:12:50,461 | INFO     | overall cleanup function is called
[2026-04-01 13:13:38] 2026-04-01 11:12:51,470 | INFO     | --- collectZombieJob: --- 10, [3924164]
[2026-04-01 13:13:38] 2026-04-01 11:12:51,470 | INFO     | zombie collector waiting for pid 3924164
[2026-04-01 13:13:38] 2026-04-01 11:12:51,470 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-01 13:13:38] 2026-04-01 11:12:51,470 | INFO     | collected zombie processes
[2026-04-01 13:13:38] 2026-04-01 11:12:51,470 | INFO     | will attempt to kill all subprocesses of pid=3924164
[2026-04-01 13:13:38] 2026-04-01 11:12:51,911 | INFO     | process IDs to be killed: [3924164] (in reverse order)
[2026-04-01 13:13:38] 2026-04-01 11:12:52,106 | WARNING  | found no corresponding commands to process id(s)
[2026-04-01 13:13:38] 2026-04-01 11:12:52,106 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-01 13:13:38] 2026-04-01 11:12:52,120 | INFO     | did not find any defunct processes belonging to 3924164
[2026-04-01 13:13:38] 2026-04-01 11:12:52,136 | INFO     | did not find any defunct processes belonging to 3924164
[2026-04-01 13:13:38] 2026-04-01 11:12:52,137 | INFO     | ready for new job
[2026-04-01 13:13:38] 2026-04-01 11:12:52,137 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-04-01 13:13:38] 2026-04-01 11:12:52,141 | INFO     | **************************************
[2026-04-01 13:13:38] 2026-04-01 11:12:52,142 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-04-01 13:13:38] 2026-04-01 11:12:52,142 | INFO     | **************************************
[2026-04-01 13:13:38] 2026-04-01 11:12:52,142 | INFO     | 
[2026-04-01 13:13:38] 2026-04-01 11:12:52,146 | INFO     | architecture information:
[2026-04-01 13:13:38] 2026-04-01 11:12:52,150 | INFO     | executing command: cat /etc/os-release
[2026-04-01 13:13:38] 2026-04-01 11:12:52,170 | INFO     | cat /etc/os-release:
[2026-04-01 13:13:38] NAME="CentOS Linux"
[2026-04-01 13:13:38] VERSION="7 (Core)"
[2026-04-01 13:13:38] ID="centos"
[2026-04-01 13:13:38] ID_LIKE="rhel fedora"
[2026-04-01 13:13:38] VERSION_ID="7"
[2026-04-01 13:13:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-01 13:13:38] ANSI_COLOR="0;31"
[2026-04-01 13:13:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-01 13:13:38] HOME_URL="https://www.centos.org/"
[2026-04-01 13:13:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-01 13:13:38] 
[2026-04-01 13:13:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-01 13:13:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-01 13:13:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-01 13:13:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-01 13:13:38] 
[2026-04-01 13:13:38] 2026-04-01 11:12:52,170 | INFO     | **************************************
[2026-04-01 13:13:38] 2026-04-01 11:12:52,673 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/0
[2026-04-01 13:13:38] 2026-04-01 11:12:52,694 | INFO     | sufficient remaining disk space (41724936192 B)
[2026-04-01 13:13:38] 2026-04-01 11:12:52,695 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-01 13:13:38] 2026-04-01 11:12:52,695 | INFO     | current server update state: UPDATING_FINAL
[2026-04-01 13:13:38] 2026-04-01 11:12:52,695 | INFO     | update_server=False
[2026-04-01 13:13:38] 2026-04-01 11:12:52,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-04-01 13:13:38] 2026-04-01 11:12:52,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-01 13:13:38] 2026-04-01 11:12:53,422 | INFO     | all data control threads have been joined
[2026-04-01 13:13:38] 2026-04-01 11:12:53,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-01 13:13:38] 2026-04-01 11:12:53,483 | INFO     | aborting loop
[2026-04-01 13:13:38] 2026-04-01 11:12:53,700 | INFO     | [job] retrieve thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:53,932 | INFO     | all payload control threads have been joined
[2026-04-01 13:13:38] 2026-04-01 11:12:54,033 | INFO     | all job control threads have been joined
[2026-04-01 13:13:38] 2026-04-01 11:12:54,134 | INFO     | [job] validate thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,141 | INFO     | [payload] execute_payloads thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,193 | INFO     | [data] copytool_in thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,355 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,427 | INFO     | [data] control thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,488 | INFO     | [job] job monitor thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,531 | INFO     | [payload] failed_post thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,667 | INFO     | [payload] validate_post thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,672 | INFO     | [job] create_data_payload thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,822 | INFO     | [data] copytool_out thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:54,937 | INFO     | [payload] control thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:55,038 | INFO     | [job] control thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:55,065 | INFO     | [payload] validate_pre thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:55,089 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-01 13:13:38] 2026-04-01 11:12:55,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-01 13:13:38] 2026-04-01 11:12:56,094 | INFO     | [job] queue monitor thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:12:59,921 | INFO     | [data] queue_monitor thread has finished
[2026-04-01 13:13:38] 2026-04-01 11:13:23,572 | INFO     | PID=3919311 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-01 13:13:38] 2026-04-01 11:13:23,576 | INFO     | .. there are 12 such processes running
[2026-04-01 13:13:38] 2026-04-01 11:13:23,576 | INFO     | found 0 job(s) in 20 queues
[2026-04-01 13:13:38] 2026-04-01 11:13:23,576 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-01 13:13:38] 2026-04-01 11:13:23,577 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-01 13:13:38] 2026-04-01 11:13:31,211 | INFO     | [monitor] cgroup control has ended
[2026-04-01 13:13:38] 2026-04-01 11:13:32,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23302998320960)>', '<ExcThread(monitor, started 23302678505216)>']
[2026-04-01 13:13:38] 2026-04-01 11:13:33,627 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-01 13:13:38] 2026-04-01 11:13:33,627 | INFO     | [monitor] control thread has ended
[2026-04-01 13:13:38] 2026-04-01 11:13:37,709 | INFO     | all workflow threads have been joined
[2026-04-01 13:13:38] 2026-04-01 11:13:37,709 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-01 13:13:38] 2026-04-01 11:13:37,709 | INFO     | traces error code: 0
[2026-04-01 13:13:38] 2026-04-01 11:13:37,709 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-01 13:13:38] 2026-04-01 11:13:37,868 [wrapper] ==== pilot stdout END ====
[2026-04-01 13:13:38] 2026-04-01 11:13:37,871 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-01 13:13:38] 2026-04-01 11:13:37,874 [wrapper] pilotpid: 3919311
[2026-04-01 13:13:38] 2026-04-01 11:13:37,878 [wrapper] Pilot exit status: 0
[2026-04-01 13:13:38] 2026-04-01 11:13:37,891 [wrapper] pandaids: 7069735578
[2026-04-01 13:13:38] 2026-04-01 11:13:37,976 [wrapper] cleanup supervisor_pilot  249404 3919312
[2026-04-01 13:13:38] 2026-04-01 11:13:37,980 [wrapper] Test setup, not cleaning
[2026-04-01 13:13:38] 2026-04-01 11:13:37,984 [wrapper] apfmon messages muted
[2026-04-01 13:13:38] 2026-04-01 11:13:37,987 [wrapper] ==== wrapper stdout END ====
[2026-04-01 13:13:38] 2026-04-01 11:13:37,990 [wrapper] ==== wrapper stderr END ====
[2026-04-01 13:13:38]  *** Error codes and diagnostics ***
[2026-04-01 13:13:38]     "exeErrorCode": 0,
[2026-04-01 13:13:38]     "exeErrorDiag": "",
[2026-04-01 13:13:38]     "pilotErrorCode": 0,
[2026-04-01 13:13:38]     "pilotErrorDiag": "",
[2026-04-01 13:13:38]  *** Listing of results directory ***
[2026-04-01 13:13:38] total 491228
[2026-04-01 13:13:38] -rwx------. 1 boinc boinc     36322 Mar 28 00:07 runpilot2-wrapper.sh
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc    585013 Mar 28 00:54 pilot3.tar.gz
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc      5118 Mar 28 00:58 queuedata.json
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc       100 Apr  1 05:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-01 13:13:38] -rwxr-xr-x. 1 boinc boinc      7986 Apr  1 05:16 run_atlas
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc       105 Apr  1 05:16 job.xml
[2026-04-01 13:13:38] -rw-r--r--. 2 boinc boinc 245268432 Apr  1 05:16 EVNT.49135364._000011.pool.root.1
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc      6564 Apr  1 05:16 init_data.xml
[2026-04-01 13:13:38] -rw-r--r--. 2 boinc boinc     15845 Apr  1 05:16 start_atlas.sh
[2026-04-01 13:13:38] drwxrwx--x. 2 boinc boinc      4096 Apr  1 05:16 shared
[2026-04-01 13:13:38] -rw-r--r--. 2 boinc boinc    597554 Apr  1 05:16 input.tar.gz
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc         0 Apr  1 05:16 boinc_lockfile
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc      2596 Apr  1 05:16 pandaJob.out
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc   1005014 Apr  1 05:16 agis_schedconf.cvmfs.json
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc       452 Apr  1 05:16 workernode_map.json
[2026-04-01 13:13:38] drwx------. 5 boinc boinc      4096 Apr  1 05:16 pilot3
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc 244656587 Apr  1 13:12 HITS.49176822._001243.pool.root.1
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc        95 Apr  1 13:12 pilot_heartbeat.json
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc       531 Apr  1 13:12 boinc_task_state.xml
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc      1035 Apr  1 13:12 memory_monitor_summary.json
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc   1511579 Apr  1 13:12 agis_ddmendpoints.agis.ALL.json
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc    596754 Apr  1 13:12 log.49176822._001243.job.log.tgz.1
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc      6405 Apr  1 13:12 heartbeat.json
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc      8192 Apr  1 13:13 boinc_mmap_file
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc        29 Apr  1 13:13 wrapper_checkpoint.txt
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc      4829 Apr  1 13:13 pilotlog.txt
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc   3978471 Apr  1 13:13 log.49176822._001243.job.log.1
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc       357 Apr  1 13:13 output.list
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc       620 Apr  1 13:13 runtime_log
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc   4597760 Apr  1 13:13 result.tar.gz
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc      9205 Apr  1 13:13 runtime_log.err
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc       668 Apr  1 13:13 ihHNDm0RVQ9n9Rq4apOajLDm4fhM0noT9bVoINGKDmdpHKDm1wuCzn.diag
[2026-04-01 13:13:38] -rw-r--r--. 1 boinc boinc     21152 Apr  1 13:13 stderr.txt
[2026-04-01 13:13:38] HITS file was successfully produced:
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc 244656587 Apr  1 13:12 shared/HITS.pool.root.1
[2026-04-01 13:13:38]  *** Contents of shared directory: ***
[2026-04-01 13:13:38] total 483544
[2026-04-01 13:13:38] -rw-r--r--. 2 boinc boinc 245268432 Apr  1 05:16 ATLAS.root_0
[2026-04-01 13:13:38] -rw-r--r--. 2 boinc boinc     15845 Apr  1 05:16 start_atlas.sh
[2026-04-01 13:13:38] -rw-r--r--. 2 boinc boinc    597554 Apr  1 05:16 input.tar.gz
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc 244656587 Apr  1 13:12 HITS.pool.root.1
[2026-04-01 13:13:38] -rw-------. 1 boinc boinc   4597760 Apr  1 13:13 result.tar.gz
13:13:39 (3915200): run_atlas exited; CPU time 112372.260969
13:13:39 (3915200): called boinc_finish(0)

</stderr_txt>
]]>

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