Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:19:41 (705259): wrapper (7.7.26015): starting
01:19:41 (705259): wrapper: running run_atlas (--nthreads 3)
[2026-03-27 01:19:41] Arguments: --nthreads 3
[2026-03-27 01:19:41] Threads: 3
[2026-03-27 01:19:41] Checking for CVMFS
[2026-03-27 01:19:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-27 01:19:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-27 01:19:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-27 01:19:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-27 01:19:41] 2.9.2.0 179687 6107 84600 157740 4 1 33149667 36864000 0 130560 0 1967761 99.978 217511 13756 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-27 01:19:41] CVMFS is ok
[2026-03-27 01:19:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-27 01:19:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-27 01:19:41] Further information can be found at the LHC@home message board.
[2026-03-27 01:19:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-27 01:19:41] Checking for apptainer binary...
[2026-03-27 01:19:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-27 01:19:41] Running /usr/bin/apptainer --version
[2026-03-27 01:19:41] apptainer version 1.4.1-1.1
[2026-03-27 01:19:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-27 01:19:41] magicA161
[2026-03-27 01:19:41] apptainer works
[2026-03-27 01:19:41] Set ATHENA_PROC_NUMBER=3
[2026-03-27 01:19:41] Set ATHENA_CORE_NUMBER=3
[2026-03-27 01:19:41] Starting ATLAS job with PandaID=7058588653
[2026-03-27 01:19:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 03:52:32]  *** The last 200 lines of the pilot log: ***
[2026-03-27 03:52:32] 2026-03-27 02:52:00,842 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 03:52:32] 2026-03-27 02:52:00,842 | INFO     | job 7058588653 has completed (purged errors)
[2026-03-27 03:52:32] 2026-03-27 02:52:00,842 | INFO     | overall cleanup function is called
[2026-03-27 03:52:32] 2026-03-27 02:52:01,264 | WARNING  | process 713425 can no longer be monitored (due to stat problems) - aborting
[2026-03-27 03:52:32] 2026-03-27 02:52:01,291 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-27 03:52:32] 2026-03-27 02:52:01,292 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-27 03:52:32] 2026-03-27 02:52:01,292 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-27 03:52:32] 2026-03-27 02:52:01,292 | WARNING  | maxPSS not found in memory monitor output
[2026-03-27 03:52:32] 2026-03-27 02:52:01,292 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7058588653/payload.stdout) since it has not been created yet
[2026-03-27 03:52:32] 2026-03-27 02:52:01,292 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-27 03:52:32] 2026-03-27 02:52:01,303 | INFO     | sufficient remaining disk space (372832731136 B)
[2026-03-27 03:52:32] 2026-03-27 02:52:01,304 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-27 03:52:32] 2026-03-27 02:52:01,304 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7058588653/HITS.49190740._000018.pool.root.1 since it does not exist
[2026-03-27 03:52:32] 2026-03-27 02:52:01,342 | INFO     | number of running child processes to parent process 713425: 1
[2026-03-27 03:52:32] 2026-03-27 02:52:01,342 | INFO     | maximum number of monitored processes: 6
[2026-03-27 03:52:32] 2026-03-27 02:52:01,342 | INFO     | aborting job monitoring since job object (job id=7058588653) has expired
[2026-03-27 03:52:32] 2026-03-27 02:52:01,849 | INFO     | --- collectZombieJob: --- 10, [713425]
[2026-03-27 03:52:32] 2026-03-27 02:52:01,849 | INFO     | zombie collector waiting for pid 713425
[2026-03-27 03:52:32] 2026-03-27 02:52:01,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 03:52:32] 2026-03-27 02:52:01,849 | INFO     | collected zombie processes
[2026-03-27 03:52:32] 2026-03-27 02:52:01,849 | INFO     | will attempt to kill all subprocesses of pid=713425
[2026-03-27 03:52:32] 2026-03-27 02:52:01,889 | INFO     | process IDs to be killed: [713425] (in reverse order)
[2026-03-27 03:52:32] 2026-03-27 02:52:01,914 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 03:52:32] 2026-03-27 02:52:01,914 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 03:52:32] 2026-03-27 02:52:01,916 | INFO     | did not find any defunct processes belonging to 713425
[2026-03-27 03:52:32] 2026-03-27 02:52:01,917 | INFO     | did not find any defunct processes belonging to 713425
[2026-03-27 03:52:32] 2026-03-27 02:52:01,917 | INFO     | ready for new job
[2026-03-27 03:52:32] 2026-03-27 02:52:01,917 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 03:52:32] 2026-03-27 02:52:01,917 | INFO     | **************************************
[2026-03-27 03:52:32] 2026-03-27 02:52:01,917 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 03:52:32] 2026-03-27 02:52:01,918 | INFO     | **************************************
[2026-03-27 03:52:32] 2026-03-27 02:52:01,918 | INFO     | 
[2026-03-27 03:52:32] 2026-03-27 02:52:01,918 | INFO     | architecture information:
[2026-03-27 03:52:32] 2026-03-27 02:52:01,918 | INFO     | executing command: cat /etc/os-release
[2026-03-27 03:52:32] 2026-03-27 02:52:01,927 | INFO     | cat /etc/os-release:
[2026-03-27 03:52:32] NAME="CentOS Linux"
[2026-03-27 03:52:32] VERSION="7 (Core)"
[2026-03-27 03:52:32] ID="centos"
[2026-03-27 03:52:32] ID_LIKE="rhel fedora"
[2026-03-27 03:52:32] VERSION_ID="7"
[2026-03-27 03:52:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 03:52:32] ANSI_COLOR="0;31"
[2026-03-27 03:52:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 03:52:32] HOME_URL="https://www.centos.org/"
[2026-03-27 03:52:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 03:52:32] 
[2026-03-27 03:52:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 03:52:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 03:52:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 03:52:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 03:52:32] 
[2026-03-27 03:52:32] 2026-03-27 02:52:01,928 | INFO     | **************************************
[2026-03-27 03:52:32] 2026-03-27 02:52:02,431 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-27 03:52:32] 2026-03-27 02:52:02,443 | INFO     | sufficient remaining disk space (372833779712 B)
[2026-03-27 03:52:32] 2026-03-27 02:52:02,443 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 03:52:32] 2026-03-27 02:52:02,444 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 03:52:32] 2026-03-27 02:52:02,444 | INFO     | update_server=False
[2026-03-27 03:52:32] 2026-03-27 02:52:02,444 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 03:52:32] 2026-03-27 02:52:02,444 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 03:52:32] 2026-03-27 02:52:02,444 | INFO     | aborting loop
[2026-03-27 03:52:32] 2026-03-27 02:52:02,444 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 03:52:32] 2026-03-27 02:52:02,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 03:52:32] 2026-03-27 02:52:02,444 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 03:52:32] 2026-03-27 02:52:02,584 | INFO     | [monitor] cgroup control has ended
[2026-03-27 03:52:32] 2026-03-27 02:52:02,746 | INFO     | all payload control threads have been joined
[2026-03-27 03:52:32] 2026-03-27 02:52:02,841 | INFO     | all data control threads have been joined
[2026-03-27 03:52:32] 2026-03-27 02:52:03,449 | INFO     | [job] job monitor thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:03,450 | INFO     | [job] retrieve thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:03,450 | INFO     | [job] queue monitor thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:03,751 | INFO     | [payload] control thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:03,846 | INFO     | [data] control thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:03,868 | INFO     | all job control threads have been joined
[2026-03-27 03:52:32] 2026-03-27 02:52:04,205 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:04,285 | INFO     | [payload] failed_post thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:04,383 | INFO     | job.realtimelogging is not enabled
[2026-03-27 03:52:32] 2026-03-27 02:52:04,450 | INFO     | [data] copytool_out thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:04,559 | INFO     | [job] validate thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:04,637 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:04,642 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:04,772 | INFO     | [data] copytool_in thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:04,804 | INFO     | [payload] validate_post thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:04,873 | INFO     | [job] control thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:05,389 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:06,448 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 03:52:32] 2026-03-27 02:52:08,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635644942144)>', '<ExcThread(monitor, started 139635015542528)>']
[2026-03-27 03:52:32] 2026-03-27 02:52:13,270 | INFO     | all workflow threads have been joined
[2026-03-27 03:52:32] 2026-03-27 02:52:13,271 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 03:52:32] 2026-03-27 02:52:13,271 | INFO     | traces error code: 0
[2026-03-27 03:52:32] 2026-03-27 02:52:13,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 03:52:32] 2026-03-27 02:52:32,548 | INFO     | PID=708992 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-27 03:52:32] 2026-03-27 02:52:32,548 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 03:52:32] 2026-03-27 02:52:32,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 03:52:32] 2026-03-27 02:52:32,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 03:52:32] 2026-03-27 02:52:32,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 03:52:32] 2026-03-27 02:52:32,548 | INFO     | [monitor] control thread has ended
[2026-03-27 03:52:32] 2026-03-27 02:52:32,599 [wrapper] ==== pilot stdout END ====
[2026-03-27 03:52:32] 2026-03-27 02:52:32,601 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 03:52:32] 2026-03-27 02:52:32,604 [wrapper] pilotpid: 708992
[2026-03-27 03:52:32] 2026-03-27 02:52:32,606 [wrapper] Pilot exit status: 0
[2026-03-27 03:52:32] 2026-03-27 02:52:32,614 [wrapper] pandaids: 7058588653
[2026-03-27 03:52:32] 2026-03-27 02:52:32,631 [wrapper] cleanup supervisor_pilot  719315 708993
[2026-03-27 03:52:32] 2026-03-27 02:52:32,633 [wrapper] Test setup, not cleaning
[2026-03-27 03:52:32] 2026-03-27 02:52:32,636 [wrapper] apfmon messages muted
[2026-03-27 03:52:32] 2026-03-27 02:52:32,639 [wrapper] ==== wrapper stdout END ====
[2026-03-27 03:52:32] 2026-03-27 02:52:32,641 [wrapper] ==== wrapper stderr END ====
[2026-03-27 03:52:32]  *** Error codes and diagnostics ***
[2026-03-27 03:52:32]     "exeErrorCode": 0,
[2026-03-27 03:52:32]     "exeErrorDiag": "",
[2026-03-27 03:52:32]     "pilotErrorCode": 0,
[2026-03-27 03:52:32]     "pilotErrorDiag": "",
[2026-03-27 03:52:32]  *** Listing of results directory ***
[2026-03-27 03:52:32] total 474580
[2026-03-27 03:52:32] -rwx------ 1 boinc boinc     36322 Mar 18 09:58 runpilot2-wrapper.sh
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc      5111 Mar 18 10:03 queuedata.json
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc    585013 Mar 18 10:03 pilot3.tar.gz
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc       100 Mar 27 01:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 03:52:32] -rwxr-xr-x 1 boinc boinc      7986 Mar 27 01:19 run_atlas
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc       105 Mar 27 01:19 job.xml
[2026-03-27 03:52:32] -rw-r--r-- 2 boinc boinc 252391359 Mar 27 01:19 EVNT.49124470._000001.pool.root.1
[2026-03-27 03:52:32] -rw-r--r-- 2 boinc boinc    597544 Mar 27 01:19 input.tar.gz
[2026-03-27 03:52:32] -rw-r--r-- 2 boinc boinc     15845 Mar 27 01:19 start_atlas.sh
[2026-03-27 03:52:32] drwxrwx--x 2 boinc boinc      4096 Mar 27 01:19 shared
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc         0 Mar 27 01:19 boinc_setup_complete
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc      6448 Mar 27 01:19 init_data.xml
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc         0 Mar 27 01:19 boinc_lockfile
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc      2602 Mar 27 01:19 pandaJob.out
[2026-03-27 03:52:32] -rw------- 1 boinc boinc   1012402 Mar 27 01:19 agis_schedconf.cvmfs.json
[2026-03-27 03:52:32] -rw------- 1 boinc boinc   1511579 Mar 27 01:19 agis_ddmendpoints.agis.ALL.json
[2026-03-27 03:52:32] -rw------- 1 boinc boinc       425 Mar 27 01:19 workernode_map.json
[2026-03-27 03:52:32] drwx------ 5 boinc boinc      4096 Mar 27 01:19 pilot3
[2026-03-27 03:52:32] -rw------- 1 boinc boinc 226409362 Mar 27 03:51 HITS.49190740._000018.pool.root.1
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc       529 Mar 27 03:51 boinc_task_state.xml
[2026-03-27 03:52:32] -rw------- 1 boinc boinc      1016 Mar 27 03:51 memory_monitor_summary.json
[2026-03-27 03:52:32] -rw------- 1 boinc boinc    316189 Mar 27 03:51 log.49190740._000018.job.log.tgz.1
[2026-03-27 03:52:32] -rw------- 1 boinc boinc      6305 Mar 27 03:52 heartbeat.json
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc        27 Mar 27 03:52 wrapper_checkpoint.txt
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc      8192 Mar 27 03:52 boinc_mmap_file
[2026-03-27 03:52:32] -rw------- 1 boinc boinc       746 Mar 27 03:52 pilotlog.txt
[2026-03-27 03:52:32] -rw------- 1 boinc boinc        95 Mar 27 03:52 pilot_heartbeat.json
[2026-03-27 03:52:32] -rw------- 1 boinc boinc   1301387 Mar 27 03:52 log.49190740._000018.job.log.1
[2026-03-27 03:52:32] -rw------- 1 boinc boinc       357 Mar 27 03:52 output.list
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc       620 Mar 27 03:52 runtime_log
[2026-03-27 03:52:32] -rw------- 1 boinc boinc   1638400 Mar 27 03:52 result.tar.gz
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc      8911 Mar 27 03:52 runtime_log.err
[2026-03-27 03:52:32] -rw------- 1 boinc boinc       661 Mar 27 03:52 VzHODmvu1M9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmz01LDm2P0Kmn.diag
[2026-03-27 03:52:32] -rw-r--r-- 1 boinc boinc     12773 Mar 27 03:52 stderr.txt
[2026-03-27 03:52:32] HITS file was successfully produced:
[2026-03-27 03:52:32] -rw------- 1 boinc boinc 226409362 Mar 27 03:51 shared/HITS.pool.root.1
[2026-03-27 03:52:32]  *** Contents of shared directory: ***
[2026-03-27 03:52:32] total 469788
[2026-03-27 03:52:32] -rw-r--r-- 2 boinc boinc 252391359 Mar 27 01:19 ATLAS.root_0
[2026-03-27 03:52:32] -rw-r--r-- 2 boinc boinc    597544 Mar 27 01:19 input.tar.gz
[2026-03-27 03:52:32] -rw-r--r-- 2 boinc boinc     15845 Mar 27 01:19 start_atlas.sh
[2026-03-27 03:52:32] -rw------- 1 boinc boinc 226409362 Mar 27 03:51 HITS.pool.root.1
[2026-03-27 03:52:32] -rw------- 1 boinc boinc   1638400 Mar 27 03:52 result.tar.gz
03:52:34 (705259): run_atlas exited; CPU time 26403.526204
03:52:34 (705259): called boinc_finish(0)

</stderr_txt>
]]>

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