Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:41:38 (4081379): wrapper (7.7.26015): starting
13:41:38 (4081379): wrapper: running run_atlas (--nthreads 9)
[2026-03-26 13:41:38] Arguments: --nthreads 9
[2026-03-26 13:41:38] Threads: 9
[2026-03-26 13:41:38] Checking for CVMFS
[2026-03-26 13:41:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 13:41:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 13:41:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 13:41:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 13:41:40] 2.13.3.0 10978 203117 621260 157729 0 202 26424322 40960001 24045 16776704 0 529844686 99.582 633670470 38280 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-26 13:41:40] CVMFS is ok
[2026-03-26 13:41:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 13:41:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 13:41:40] Further information can be found at the LHC@home message board.
[2026-03-26 13:41:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 13:41:40] Checking for apptainer binary...
[2026-03-26 13:41:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 13:41:40] Running /usr/bin/apptainer --version
[2026-03-26 13:41:40] apptainer version 1.4.5-2.el9
[2026-03-26 13:41:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 13:41:40] c6-8-12-1.aglt2.org
[2026-03-26 13:41:40] apptainer works
[2026-03-26 13:41:40] Set ATHENA_PROC_NUMBER=9
[2026-03-26 13:41:40] Set ATHENA_CORE_NUMBER=9
[2026-03-26 13:41:40] Starting ATLAS job with PandaID=7058654578
[2026-03-26 13:41:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:47:25 (1267250): wrapper (7.7.26015): starting
20:47:25 (1267250): wrapper: running run_atlas (--nthreads 11)
[2026-03-26 20:47:25] Arguments: --nthreads 11
[2026-03-26 20:47:25] Threads: 11
[2026-03-26 20:47:25] This job has been restarted, cleaning up previous attempt
[2026-03-26 20:47:25] Checking for CVMFS
[2026-03-26 20:47:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 20:47:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 20:47:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 20:47:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 20:47:27] 2.13.3.0 10978 203543 632996 157740 3 416 29460412 40960000 23920 16776704 0 531070959 99.582 634167184 38279 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-26 20:47:27] CVMFS is ok
[2026-03-26 20:47:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 20:47:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 20:47:27] Further information can be found at the LHC@home message board.
[2026-03-26 20:47:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 20:47:27] Checking for apptainer binary...
[2026-03-26 20:47:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 20:47:27] Running /usr/bin/apptainer --version
[2026-03-26 20:47:27] apptainer version 1.4.5-2.el9
[2026-03-26 20:47:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 20:47:28] c6-8-12-1.aglt2.org
[2026-03-26 20:47:28] apptainer works
[2026-03-26 20:47:28] Set ATHENA_PROC_NUMBER=11
[2026-03-26 20:47:28] Set ATHENA_CORE_NUMBER=11
[2026-03-26 20:47:28] Starting ATLAS job with PandaID=7058654578
[2026-03-26 20:47:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 04:42:20]  *** The last 200 lines of the pilot log: ***
[2026-03-27 04:42:20] 2026-03-27 08:41:47,433 | INFO     | job 7058654578 has finished - writing final server update
[2026-03-27 04:42:20] 2026-03-27 08:41:47,433 | INFO     | total number of processed events: 400 (read)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,442 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7058654578/memory_monitor_summary.json (trf name=prmon)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,442 | INFO     | extracted standard info from prmon json
[2026-03-27 04:42:20] 2026-03-27 08:41:47,442 | INFO     | extracted standard memory fields from prmon json
[2026-03-27 04:42:20] 2026-03-27 08:41:47,442 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-27 04:42:20] 2026-03-27 08:41:47,443 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-27 04:42:20] 2026-03-27 08:41:47,443 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-27 04:42:20] 2026-03-27 08:41:47,449 | INFO     | fitting pss+swap vs Time
[2026-03-27 04:42:20] 2026-03-27 08:41:47,450 | INFO     | sum of square deviations: 31376936667.09856
[2026-03-27 04:42:20] 2026-03-27 08:41:47,454 | INFO     | sum of deviations: 135208782691.74686
[2026-03-27 04:42:20] 2026-03-27 08:41:47,454 | INFO     | mean x: 1774586715.7424893
[2026-03-27 04:42:20] 2026-03-27 08:41:47,454 | INFO     | mean y: 2658887.856223176
[2026-03-27 04:42:20] 2026-03-27 08:41:47,454 | INFO     | intersect: -7644349874.094862
[2026-03-27 04:42:20] 2026-03-27 08:41:47,455 | INFO     | chi2: 2.457706226770614
[2026-03-27 04:42:20] 2026-03-27 08:41:47,456 | INFO     | sum of square deviations: 30377724489.30158
[2026-03-27 04:42:20] 2026-03-27 08:41:47,460 | INFO     | sum of deviations: 165076352570.03687
[2026-03-27 04:42:20] 2026-03-27 08:41:47,460 | INFO     | mean x: 1774586563.2451193
[2026-03-27 04:42:20] 2026-03-27 08:41:47,460 | INFO     | mean y: 2663404.2386117135
[2026-03-27 04:42:20] 2026-03-27 08:41:47,460 | INFO     | intersect: -9640661831.773378
[2026-03-27 04:42:20] 2026-03-27 08:41:47,460 | INFO     | chi2: 1.7560062461624963
[2026-03-27 04:42:20] 2026-03-27 08:41:47,460 | INFO     | current chi2=1.7560062461624963 (change=28.551011221961215 %)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,461 | INFO     | sum of square deviations: 29399954573.997704
[2026-03-27 04:42:20] 2026-03-27 08:41:47,465 | INFO     | sum of deviations: 162872288450.71732
[2026-03-27 04:42:20] 2026-03-27 08:41:47,465 | INFO     | mean x: 1774586410.747807
[2026-03-27 04:42:20] 2026-03-27 08:41:47,465 | INFO     | mean y: 2663060.4671052634
[2026-03-27 04:42:20] 2026-03-27 08:41:47,465 | INFO     | intersect: -9828336815.555443
[2026-03-27 04:42:20] 2026-03-27 08:41:47,466 | INFO     | chi2: 1.7557583941518229
[2026-03-27 04:42:20] 2026-03-27 08:41:47,466 | INFO     | current chi2=1.7557583941518229 (change=0.01411452898958079 %)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,466 | INFO     | right removable region: 455
[2026-03-27 04:42:20] 2026-03-27 08:41:47,466 | INFO     | sum of square deviations: 30377655559.30158
[2026-03-27 04:42:20] 2026-03-27 08:41:47,472 | INFO     | sum of deviations: 47677012256.17786
[2026-03-27 04:42:20] 2026-03-27 08:41:47,472 | INFO     | mean x: 1774586868.2451193
[2026-03-27 04:42:20] 2026-03-27 08:41:47,472 | INFO     | mean y: 2672193.856832972
[2026-03-27 04:42:20] 2026-03-27 08:41:47,472 | INFO     | intersect: -2782499943.664107
[2026-03-27 04:42:20] 2026-03-27 08:41:47,473 | INFO     | chi2: 0.8767144412059805
[2026-03-27 04:42:20] 2026-03-27 08:41:47,473 | INFO     | current chi2=0.8767144412059805 (change=64.32793994431267 %)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,473 | INFO     | sum of square deviations: 29399816713.997704
[2026-03-27 04:42:20] 2026-03-27 08:41:47,477 | INFO     | sum of deviations: 25982161750.95173
[2026-03-27 04:42:20] 2026-03-27 08:41:47,478 | INFO     | mean x: 1774587020.747807
[2026-03-27 04:42:20] 2026-03-27 08:41:47,478 | INFO     | mean y: 2675577.451754386
[2026-03-27 04:42:20] 2026-03-27 08:41:47,478 | INFO     | intersect: -1565620152.5096002
[2026-03-27 04:42:20] 2026-03-27 08:41:47,478 | INFO     | chi2: 0.8180260886954721
[2026-03-27 04:42:20] 2026-03-27 08:41:47,479 | INFO     | current chi2=0.8180260886954721 (change=6.694124078734072 %)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,479 | INFO     | left removable region: 20
[2026-03-27 04:42:20] 2026-03-27 08:41:47,479 | INFO     | sum of square deviations: 25522053969.68737
[2026-03-27 04:42:20] 2026-03-27 08:41:47,483 | INFO     | sum of deviations: 33636690887.296543
[2026-03-27 04:42:20] 2026-03-27 08:41:47,483 | INFO     | mean x: 1774586990.2505748
[2026-03-27 04:42:20] 2026-03-27 08:41:47,483 | INFO     | mean y: 2683786.8137931037
[2026-03-27 04:42:20] 2026-03-27 08:41:47,484 | INFO     | intersect: -2336126173.9586425
[2026-03-27 04:42:20] 2026-03-27 08:41:47,484 | INFO     | chi2: 0.03115799368543132
[2026-03-27 04:42:20] 2026-03-27 08:41:47,484 | INFO     | current memory leak: 1.32 B/s (using 435 data points, chi2=0.03)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,485 | INFO     | could have reported an average CPU frequency of 3070 MHz (19 samples)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,485 | INFO     | ..............................
[2026-03-27 04:42:20] 2026-03-27 08:41:47,486 | INFO     | . Timing measurements:
[2026-03-27 04:42:20] 2026-03-27 08:41:47,486 | INFO     | . get job = 0 s
[2026-03-27 04:42:20] 2026-03-27 08:41:47,486 | INFO     | . initial setup = 3 s
[2026-03-27 04:42:20] 2026-03-27 08:41:47,486 | INFO     | . payload setup = 35 s
[2026-03-27 04:42:20] 2026-03-27 08:41:47,486 | INFO     | . stage-in = 0 s
[2026-03-27 04:42:20] 2026-03-27 08:41:47,486 | INFO     | . payload execution = 28379 s
[2026-03-27 04:42:20] 2026-03-27 08:41:47,486 | INFO     | . stage-out = 2 s
[2026-03-27 04:42:20] 2026-03-27 08:41:47,486 | INFO     | . log creation = 0 s
[2026-03-27 04:42:20] 2026-03-27 08:41:47,486 | INFO     | ..............................
[2026-03-27 04:42:20] 2026-03-27 08:41:47,574 | INFO     | 
[2026-03-27 04:42:20] 2026-03-27 08:41:47,574 | INFO     | job summary report
[2026-03-27 04:42:20] 2026-03-27 08:41:47,574 | INFO     | --------------------------------------------------
[2026-03-27 04:42:20] 2026-03-27 08:41:47,574 | INFO     | PanDA job id: 7058654578
[2026-03-27 04:42:20] 2026-03-27 08:41:47,574 | INFO     | task id: 49178447
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | errors: (none)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | pilot state: finished 
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | transexitcode: 0
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | exeerrorcode: 0
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | exeerrordiag: 
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | exitcode: 0
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | exitmsg: OK
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | cpuconsumptiontime: 113341 s
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | nevents: 400
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | neventsw: 0
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | pid: 1282533
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | pgrp: 1282533
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | corecount: 11
[2026-03-27 04:42:20] 2026-03-27 08:41:47,575 | INFO     | event service: False
[2026-03-27 04:42:20] 2026-03-27 08:41:47,576 | INFO     | sizes: {0: 2279787, 1: 2280191, 28419: 2317137, 28423: 2326191, 28424: 2326329}
[2026-03-27 04:42:20] 2026-03-27 08:41:47,576 | INFO     | --------------------------------------------------
[2026-03-27 04:42:20] 2026-03-27 08:41:47,576 | INFO     | 
[2026-03-27 04:42:20] 2026-03-27 08:41:47,576 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-27 04:42:20] 2026-03-27 08:41:47,597 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,597 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,597 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,597 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,597 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,598 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 04:42:20] 2026-03-27 08:41:47,599 | INFO     | job 7058654578 has completed (purged errors)
[2026-03-27 04:42:20] 2026-03-27 08:41:47,599 | INFO     | overall cleanup function is called
[2026-03-27 04:42:20] 2026-03-27 08:41:47,961 | INFO     | PID=1275294 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-27 04:42:20] 2026-03-27 08:41:47,961 | INFO     | .. there are 23 such processes running
[2026-03-27 04:42:20] 2026-03-27 08:41:48,619 | INFO     | --- collectZombieJob: --- 10, [1282533]
[2026-03-27 04:42:20] 2026-03-27 08:41:48,619 | INFO     | zombie collector waiting for pid 1282533
[2026-03-27 04:42:20] 2026-03-27 08:41:48,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 04:42:20] 2026-03-27 08:41:48,619 | INFO     | collected zombie processes
[2026-03-27 04:42:20] 2026-03-27 08:41:48,619 | INFO     | will attempt to kill all subprocesses of pid=1282533
[2026-03-27 04:42:20] 2026-03-27 08:41:48,924 | INFO     | process IDs to be killed: [1282533] (in reverse order)
[2026-03-27 04:42:20] 2026-03-27 08:41:49,023 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 04:42:20] 2026-03-27 08:41:49,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 04:42:20] 2026-03-27 08:41:49,036 | INFO     | did not find any defunct processes belonging to 1282533
[2026-03-27 04:42:20] 2026-03-27 08:41:49,048 | INFO     | did not find any defunct processes belonging to 1282533
[2026-03-27 04:42:20] 2026-03-27 08:41:49,049 | INFO     | ready for new job
[2026-03-27 04:42:20] 2026-03-27 08:41:49,049 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 04:42:20] 2026-03-27 08:41:49,052 | INFO     | **************************************
[2026-03-27 04:42:20] 2026-03-27 08:41:49,052 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 04:42:20] 2026-03-27 08:41:49,052 | INFO     | **************************************
[2026-03-27 04:42:20] 2026-03-27 08:41:49,052 | INFO     | 
[2026-03-27 04:42:20] 2026-03-27 08:41:49,055 | INFO     | architecture information:
[2026-03-27 04:42:20] 2026-03-27 08:41:49,055 | INFO     | executing command: cat /etc/os-release
[2026-03-27 04:42:20] 2026-03-27 08:41:49,070 | INFO     | cat /etc/os-release:
[2026-03-27 04:42:20] NAME="CentOS Linux"
[2026-03-27 04:42:20] VERSION="7 (Core)"
[2026-03-27 04:42:20] ID="centos"
[2026-03-27 04:42:20] ID_LIKE="rhel fedora"
[2026-03-27 04:42:20] VERSION_ID="7"
[2026-03-27 04:42:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 04:42:20] ANSI_COLOR="0;31"
[2026-03-27 04:42:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 04:42:20] HOME_URL="https://www.centos.org/"
[2026-03-27 04:42:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 04:42:20] 
[2026-03-27 04:42:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 04:42:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 04:42:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 04:42:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 04:42:20] 
[2026-03-27 04:42:20] 2026-03-27 08:41:49,070 | INFO     | **************************************
[2026-03-27 04:42:20] 2026-03-27 08:41:49,575 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-27 04:42:20] 2026-03-27 08:41:49,591 | INFO     | sufficient remaining disk space (57915998208 B)
[2026-03-27 04:42:20] 2026-03-27 08:41:49,591 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 04:42:20] 2026-03-27 08:41:49,592 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 04:42:20] 2026-03-27 08:41:49,592 | INFO     | update_server=False
[2026-03-27 04:42:20] 2026-03-27 08:41:49,592 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 04:42:20] 2026-03-27 08:41:49,592 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 04:42:20] 2026-03-27 08:41:49,821 | INFO     | all data control threads have been joined
[2026-03-27 04:42:20] 2026-03-27 08:41:50,442 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 04:42:20] 2026-03-27 08:41:50,442 | INFO     | aborting loop
[2026-03-27 04:42:20] 2026-03-27 08:41:50,598 | INFO     | [job] retrieve thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:50,656 | INFO     | [job] validate thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:50,699 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:50,788 | INFO     | all payload control threads have been joined
[2026-03-27 04:42:20] 2026-03-27 08:41:50,826 | INFO     | [data] control thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:50,902 | INFO     | [payload] failed_post thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:50,956 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:51,046 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:51,232 | INFO     | all job control threads have been joined
[2026-03-27 04:42:20] 2026-03-27 08:41:51,404 | INFO     | [data] copytool_in thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:51,447 | INFO     | [job] job monitor thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:51,471 | INFO     | [payload] validate_post thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:51,498 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:51,600 | INFO     | [data] copytool_out thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:51,794 | INFO     | [payload] control thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:52,237 | INFO     | [job] control thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:52,324 | INFO     | [monitor] cgroup control has ended
[2026-03-27 04:42:20] 2026-03-27 08:41:52,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 04:42:20] 2026-03-27 08:41:52,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 04:42:20] 2026-03-27 08:41:53,587 | INFO     | [job] queue monitor thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:56,640 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 04:42:20] 2026-03-27 08:41:58,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140666383787840)>', '<ExcThread(monitor, started 140666034165504)>']
[2026-03-27 04:42:20] 2026-03-27 08:42:03,686 | INFO     | all workflow threads have been joined
[2026-03-27 04:42:20] 2026-03-27 08:42:03,688 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 04:42:20] 2026-03-27 08:42:03,688 | INFO     | traces error code: 0
[2026-03-27 04:42:20] 2026-03-27 08:42:03,688 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 04:42:20] 2026-03-27 08:42:20,458 | INFO     | PID=1275294 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-27 04:42:20] 2026-03-27 08:42:20,459 | INFO     | .. there are 23 such processes running
[2026-03-27 04:42:20] 2026-03-27 08:42:20,459 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 04:42:20] 2026-03-27 08:42:20,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 04:42:20] 2026-03-27 08:42:20,459 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 04:42:20] 2026-03-27 08:42:20,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 04:42:20] 2026-03-27 08:42:20,460 | INFO     | [monitor] control thread has ended
[2026-03-27 04:42:20] 2026-03-27 08:42:20,613 [wrapper] ==== pilot stdout END ====
[2026-03-27 04:42:20] 2026-03-27 08:42:20,615 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 04:42:20] 2026-03-27 08:42:20,617 [wrapper] pilotpid: 1275294
[2026-03-27 04:42:20] 2026-03-27 08:42:20,619 [wrapper] Pilot exit status: 0
[2026-03-27 04:42:20] 2026-03-27 08:42:20,627 [wrapper] pandaids: 7058654578 7058654578
[2026-03-27 04:42:20] 2026-03-27 08:42:20,693 [wrapper] cleanup supervisor_pilot 2899788 1275295
[2026-03-27 04:42:20] 2026-03-27 08:42:20,697 [wrapper] Test setup, not cleaning
[2026-03-27 04:42:20] 2026-03-27 08:42:20,700 [wrapper] apfmon messages muted
[2026-03-27 04:42:20] 2026-03-27 08:42:20,703 [wrapper] ==== wrapper stdout END ====
[2026-03-27 04:42:20] 2026-03-27 08:42:20,705 [wrapper] ==== wrapper stderr END ====
[2026-03-27 04:42:20]  *** Error codes and diagnostics ***
[2026-03-27 04:42:20]     "exeErrorCode": 0,
[2026-03-27 04:42:20]     "exeErrorDiag": "",
[2026-03-27 04:42:20]     "pilotErrorCode": 0,
[2026-03-27 04:42:20]     "pilotErrorDiag": "",
[2026-03-27 04:42:20]  *** Listing of results directory ***
[2026-03-27 04:42:20] total 732404
[2026-03-27 04:42:20] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas    585013 Mar 18 04:55 pilot3.tar.gz
[2026-03-27 04:42:20] -rwx------. 1 boincer umatlas     36322 Mar 18 04:58 runpilot2-wrapper.sh
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas      5111 Mar 18 05:03 queuedata.json
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas       100 Mar 26 13:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 04:42:20] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 26 13:41 run_atlas
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas       105 Mar 26 13:41 job.xml
[2026-03-27 04:42:20] -rw-r--r--. 3 boincer umatlas 244328783 Mar 26 13:41 EVNT.49128800._000016.pool.root.1
[2026-03-27 04:42:20] -rw-r--r--. 3 boincer umatlas 244328783 Mar 26 13:41 ATLAS.root_0
[2026-03-27 04:42:20] -rw-r--r--. 2 boincer umatlas     15845 Mar 26 13:41 start_atlas.sh
[2026-03-27 04:42:20] drwxrwx--x. 2 boincer umatlas      4096 Mar 26 13:41 shared
[2026-03-27 04:42:20] -rw-r--r--. 2 boincer umatlas    597546 Mar 26 13:41 input.tar.gz
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas         0 Mar 26 13:41 boinc_lockfile
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas      2585 Mar 26 20:47 pandaJob.out
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas        57 Mar 26 20:47 setup.sh.local
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas   1012402 Mar 26 20:47 agis_schedconf.cvmfs.json
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas       442 Mar 26 20:48 workernode_map.json
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas      6843 Mar 27 04:39 init_data.xml
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas 248606331 Mar 27 04:41 HITS.49178447._000390.pool.root.1
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas       531 Mar 27 04:41 boinc_task_state.xml
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas        96 Mar 27 04:41 pilot_heartbeat.json
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas      1052 Mar 27 04:41 memory_monitor_summary.json
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas   1511579 Mar 27 04:41 agis_ddmendpoints.agis.ALL.json
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas    698290 Mar 27 04:41 log.49178447._000390.job.log.tgz.1
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas      6396 Mar 27 04:41 heartbeat.json
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas      8192 Mar 27 04:42 boinc_mmap_file
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas        29 Mar 27 04:42 wrapper_checkpoint.txt
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas       823 Mar 27 04:42 pilotlog.txt
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas   3690944 Mar 27 04:42 log.49178447._000390.job.log.1
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas       357 Mar 27 04:42 output.list
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas       620 Mar 27 04:42 runtime_log
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas   4403200 Mar 27 04:42 result.tar.gz
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas      9434 Mar 27 04:42 runtime_log.err
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas       785 Mar 27 04:42 bMZNDmqu1M9n9Rq4apOajLDm4fhM0noT9bVooX4SDmg5yLDm9qQOEm.diag
[2026-03-27 04:42:20] -rw-r--r--. 1 boincer umatlas     23389 Mar 27 04:42 stderr.txt
[2026-03-27 04:42:20] HITS file was successfully produced:
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas 248606331 Mar 27 04:41 shared/HITS.pool.root.1
[2026-03-27 04:42:20]  *** Contents of shared directory: ***
[2026-03-27 04:42:20] total 486288
[2026-03-27 04:42:20] -rw-r--r--. 3 boincer umatlas 244328783 Mar 26 13:41 ATLAS.root_0
[2026-03-27 04:42:20] -rw-r--r--. 2 boincer umatlas     15845 Mar 26 13:41 start_atlas.sh
[2026-03-27 04:42:20] -rw-r--r--. 2 boincer umatlas    597546 Mar 26 13:41 input.tar.gz
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas 248606331 Mar 27 04:41 HITS.pool.root.1
[2026-03-27 04:42:20] -rw-------. 1 boincer umatlas   4403200 Mar 27 04:42 result.tar.gz
04:42:22 (1267250): run_atlas exited; CPU time 114277.561552
04:42:22 (1267250): called boinc_finish(0)

</stderr_txt>
]]>

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