Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:22:04 (3699): wrapper (7.7.26015): starting
09:22:04 (3699): wrapper: running run_atlas (--nthreads 8)
[2026-03-26 09:22:04] Arguments: --nthreads 8
[2026-03-26 09:22:04] Threads: 8
[2026-03-26 09:22:04] Checking for CVMFS
[2026-03-26 09:22:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 09:22:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 09:22:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 09:22:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 09:22:04] 2.11.2.0 18601 274720 147764 157721 2 8 11494205 18432001 36 130560 0 165537603 99.987 9668452 25800 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-26 09:22:04] CVMFS is ok
[2026-03-26 09:22:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 09:22:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 09:22:04] Further information can be found at the LHC@home message board.
[2026-03-26 09:22:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 09:22:04] Checking for apptainer binary...
[2026-03-26 09:22:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 09:22:04] Running /usr/bin/apptainer --version
[2026-03-26 09:22:04] apptainer version 1.3.2-1.el7
[2026-03-26 09:22:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 09:22:05] c-206-13.aglt2.org
[2026-03-26 09:22:05] apptainer works
[2026-03-26 09:22:05] Set ATHENA_PROC_NUMBER=8
[2026-03-26 09:22:05] Set ATHENA_CORE_NUMBER=8
[2026-03-26 09:22:05] Starting ATLAS job with PandaID=7058174154
[2026-03-26 09:22:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 14:30:57]  *** The last 200 lines of the pilot log: ***
[2026-03-26 14:30:57] 2026-03-26 18:30:19,671 | INFO     | mean y: 2511541.5445544557
[2026-03-26 14:30:57] 2026-03-26 18:30:19,671 | INFO     | intersect: 2284758230.691745
[2026-03-26 14:30:57] 2026-03-26 18:30:19,672 | INFO     | chi2: 2.1943928872611407
[2026-03-26 14:30:57] 2026-03-26 18:30:19,673 | INFO     | sum of square deviations: 8205826414.5
[2026-03-26 14:30:57] 2026-03-26 18:30:19,676 | INFO     | sum of deviations: 9330157887.999996
[2026-03-26 14:30:57] 2026-03-26 18:30:19,676 | INFO     | mean x: 1774540430.5
[2026-03-26 14:30:57] 2026-03-26 18:30:19,676 | INFO     | mean y: 2518859.053691275
[2026-03-26 14:30:57] 2026-03-26 18:30:19,677 | INFO     | intersect: -2015162427.2513793
[2026-03-26 14:30:57] 2026-03-26 18:30:19,677 | INFO     | chi2: 1.4213820778633033
[2026-03-26 14:30:57] 2026-03-26 18:30:19,678 | INFO     | current chi2=1.4213820778633033 (change=35.22663666498872 %)
[2026-03-26 14:30:57] 2026-03-26 18:30:19,678 | INFO     | sum of square deviations: 7799669962.0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,682 | INFO     | sum of deviations: 9239465345.0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,682 | INFO     | mean x: 1774540278.0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,682 | INFO     | mean y: 2518825.0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,682 | INFO     | intersect: -2099596198.041749
[2026-03-26 14:30:57] 2026-03-26 18:30:19,683 | INFO     | chi2: 1.421636607013976
[2026-03-26 14:30:57] 2026-03-26 18:30:19,683 | INFO     | current chi2=1.421636607013976 (change=-0.01790715914016818 %)
[2026-03-26 14:30:57] 2026-03-26 18:30:19,684 | INFO     | right removable region: 292
[2026-03-26 14:30:57] 2026-03-26 18:30:19,684 | INFO     | sum of square deviations: 8205826414.5
[2026-03-26 14:30:57] 2026-03-26 18:30:19,688 | INFO     | sum of deviations: -56027616353.99997
[2026-03-26 14:30:57] 2026-03-26 18:30:19,688 | INFO     | mean x: 1774540735.5
[2026-03-26 14:30:57] 2026-03-26 18:30:19,688 | INFO     | mean y: 2527737.322147651
[2026-03-26 14:30:57] 2026-03-26 18:30:19,689 | INFO     | intersect: 12118709887.782251
[2026-03-26 14:30:57] 2026-03-26 18:30:19,689 | INFO     | chi2: 0.8495006828579726
[2026-03-26 14:30:57] 2026-03-26 18:30:19,690 | INFO     | current chi2=0.8495006828579726 (change=61.28766695383118 %)
[2026-03-26 14:30:57] 2026-03-26 18:30:19,690 | INFO     | sum of square deviations: 7799669962.0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,694 | INFO     | sum of deviations: -54978020342.0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,694 | INFO     | mean x: 1774540888.0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,694 | INFO     | mean y: 2527338.9044368602
[2026-03-26 14:30:57] 2026-03-26 18:30:19,695 | INFO     | intersect: 12510844423.279903
[2026-03-26 14:30:57] 2026-03-26 18:30:19,695 | INFO     | chi2: 0.8485001186436525
[2026-03-26 14:30:57] 2026-03-26 18:30:19,696 | INFO     | current chi2=0.8485001186436525 (change=0.11778262625451448 %)
[2026-03-26 14:30:57] 2026-03-26 18:30:19,696 | INFO     | left removable region: 20
[2026-03-26 14:30:57] 2026-03-26 18:30:19,697 | INFO     | sum of square deviations: 6239923508.0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,700 | INFO     | sum of deviations: -27327731051.0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,700 | INFO     | mean x: 1774540857.5
[2026-03-26 14:30:57] 2026-03-26 18:30:19,701 | INFO     | mean y: 2532726.044117647
[2026-03-26 14:30:57] 2026-03-26 18:30:19,701 | INFO     | intersect: 7774130443.644042
[2026-03-26 14:30:57] 2026-03-26 18:30:19,702 | INFO     | chi2: 0.05790370554737807
[2026-03-26 14:30:57] 2026-03-26 18:30:19,702 | INFO     | current memory leak: -4.38 B/s (using 272 data points, chi2=0.06)
[2026-03-26 14:30:57] 2026-03-26 18:30:19,703 | INFO     | could have reported an average CPU frequency of 1778 MHz (14 samples)
[2026-03-26 14:30:57] 2026-03-26 18:30:19,703 | INFO     | ..............................
[2026-03-26 14:30:57] 2026-03-26 18:30:19,703 | INFO     | . Timing measurements:
[2026-03-26 14:30:57] 2026-03-26 18:30:19,704 | INFO     | . get job = 0 s
[2026-03-26 14:30:57] 2026-03-26 18:30:19,704 | INFO     | . initial setup = 7 s
[2026-03-26 14:30:57] 2026-03-26 18:30:19,704 | INFO     | . payload setup = 11 s
[2026-03-26 14:30:57] 2026-03-26 18:30:19,704 | INFO     | . stage-in = 0 s
[2026-03-26 14:30:57] 2026-03-26 18:30:19,705 | INFO     | . payload execution = 18446 s
[2026-03-26 14:30:57] 2026-03-26 18:30:19,705 | INFO     | . stage-out = 2 s
[2026-03-26 14:30:57] 2026-03-26 18:30:19,705 | INFO     | . log creation = 0 s
[2026-03-26 14:30:57] 2026-03-26 18:30:19,705 | INFO     | ..............................
[2026-03-26 14:30:57] 2026-03-26 18:30:19,866 | INFO     | 
[2026-03-26 14:30:57] 2026-03-26 18:30:19,866 | INFO     | job summary report
[2026-03-26 14:30:57] 2026-03-26 18:30:19,866 | INFO     | --------------------------------------------------
[2026-03-26 14:30:57] 2026-03-26 18:30:19,867 | INFO     | PanDA job id: 7058174154
[2026-03-26 14:30:57] 2026-03-26 18:30:19,867 | INFO     | task id: 49182338
[2026-03-26 14:30:57] 2026-03-26 18:30:19,867 | INFO     | errors: (none)
[2026-03-26 14:30:57] 2026-03-26 18:30:19,867 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-26 14:30:57] 2026-03-26 18:30:19,868 | INFO     | pilot state: finished 
[2026-03-26 14:30:57] 2026-03-26 18:30:19,868 | INFO     | transexitcode: 0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,868 | INFO     | exeerrorcode: 0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,869 | INFO     | exeerrordiag: 
[2026-03-26 14:30:57] 2026-03-26 18:30:19,869 | INFO     | exitcode: 0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,869 | INFO     | exitmsg: OK
[2026-03-26 14:30:57] 2026-03-26 18:30:19,869 | INFO     | cpuconsumptiontime: 142495 s
[2026-03-26 14:30:57] 2026-03-26 18:30:19,869 | INFO     | nevents: 400
[2026-03-26 14:30:57] 2026-03-26 18:30:19,870 | INFO     | neventsw: 0
[2026-03-26 14:30:57] 2026-03-26 18:30:19,870 | INFO     | pid: 18910
[2026-03-26 14:30:57] 2026-03-26 18:30:19,870 | INFO     | pgrp: 18910
[2026-03-26 14:30:57] 2026-03-26 18:30:19,871 | INFO     | corecount: 8
[2026-03-26 14:30:57] 2026-03-26 18:30:19,871 | INFO     | event service: False
[2026-03-26 14:30:57] 2026-03-26 18:30:19,871 | INFO     | sizes: {0: 2279893, 1: 2280354, 11: 2280354, 18461: 2312865, 18462: 2312864, 18464: 2322102, 18465: 2322240}
[2026-03-26 14:30:57] 2026-03-26 18:30:19,871 | INFO     | --------------------------------------------------
[2026-03-26 14:30:57] 2026-03-26 18:30:19,872 | INFO     | 
[2026-03-26 14:30:57] 2026-03-26 18:30:19,872 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-26 14:30:57] 2026-03-26 18:30:19,892 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,892 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,892 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,892 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,893 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,894 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,894 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,894 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,894 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,895 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-26 14:30:57] 2026-03-26 18:30:19,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,895 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-26 14:30:57] 2026-03-26 18:30:19,896 | INFO     | job 7058174154 has completed (purged errors)
[2026-03-26 14:30:57] 2026-03-26 18:30:19,896 | INFO     | overall cleanup function is called
[2026-03-26 14:30:57] 2026-03-26 18:30:19,966 | WARNING  | process 18910 can no longer be monitored (due to stat problems) - aborting
[2026-03-26 14:30:57] 2026-03-26 18:30:20,100 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-26 14:30:57] 2026-03-26 18:30:20,102 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-26 14:30:57] 2026-03-26 18:30:20,102 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-26 14:30:57] 2026-03-26 18:30:20,102 | WARNING  | maxPSS not found in memory monitor output
[2026-03-26 14:30:57] 2026-03-26 18:30:20,103 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/1/PanDA_Pilot-7058174154/payload.stdout) since it has not been created yet
[2026-03-26 14:30:57] 2026-03-26 18:30:20,103 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-26 14:30:57] 2026-03-26 18:30:20,120 | INFO     | sufficient remaining disk space (27960279040 B)
[2026-03-26 14:30:57] 2026-03-26 18:30:20,120 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-26 14:30:57] 2026-03-26 18:30:20,120 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-7058174154/HITS.49182338._000027.pool.root.1 since it does not exist
[2026-03-26 14:30:57] 2026-03-26 18:30:20,283 | INFO     | number of running child processes to parent process 18910: 1
[2026-03-26 14:30:57] 2026-03-26 18:30:20,284 | INFO     | maximum number of monitored processes: 6
[2026-03-26 14:30:57] 2026-03-26 18:30:20,284 | INFO     | aborting job monitoring since job object (job id=7058174154) has expired
[2026-03-26 14:30:57] 2026-03-26 18:30:20,902 | INFO     | --- collectZombieJob: --- 10, [18910]
[2026-03-26 14:30:57] 2026-03-26 18:30:20,903 | INFO     | zombie collector waiting for pid 18910
[2026-03-26 14:30:57] 2026-03-26 18:30:20,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-26 14:30:57] 2026-03-26 18:30:20,903 | INFO     | collected zombie processes
[2026-03-26 14:30:57] 2026-03-26 18:30:20,903 | INFO     | will attempt to kill all subprocesses of pid=18910
[2026-03-26 14:30:57] 2026-03-26 18:30:21,064 | INFO     | process IDs to be killed: [18910] (in reverse order)
[2026-03-26 14:30:57] 2026-03-26 18:30:21,127 | WARNING  | found no corresponding commands to process id(s)
[2026-03-26 14:30:57] 2026-03-26 18:30:21,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-26 14:30:57] 2026-03-26 18:30:21,133 | INFO     | did not find any defunct processes belonging to 18910
[2026-03-26 14:30:57] 2026-03-26 18:30:21,138 | INFO     | did not find any defunct processes belonging to 18910
[2026-03-26 14:30:57] 2026-03-26 18:30:21,138 | INFO     | ready for new job
[2026-03-26 14:30:57] 2026-03-26 18:30:21,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-26 14:30:57] 2026-03-26 18:30:21,141 | INFO     | **************************************
[2026-03-26 14:30:57] 2026-03-26 18:30:21,141 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-26 14:30:57] 2026-03-26 18:30:21,141 | INFO     | **************************************
[2026-03-26 14:30:57] 2026-03-26 18:30:21,141 | INFO     | 
[2026-03-26 14:30:57] 2026-03-26 18:30:21,143 | INFO     | architecture information:
[2026-03-26 14:30:57] 2026-03-26 18:30:21,143 | INFO     | executing command: cat /etc/os-release
[2026-03-26 14:30:57] 2026-03-26 18:30:21,159 | INFO     | cat /etc/os-release:
[2026-03-26 14:30:57] NAME="CentOS Linux"
[2026-03-26 14:30:57] VERSION="7 (Core)"
[2026-03-26 14:30:57] ID="centos"
[2026-03-26 14:30:57] ID_LIKE="rhel fedora"
[2026-03-26 14:30:57] VERSION_ID="7"
[2026-03-26 14:30:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-26 14:30:57] ANSI_COLOR="0;31"
[2026-03-26 14:30:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-26 14:30:57] HOME_URL="https://www.centos.org/"
[2026-03-26 14:30:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-26 14:30:57] 
[2026-03-26 14:30:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-26 14:30:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-26 14:30:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-26 14:30:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-26 14:30:57] 
[2026-03-26 14:30:57] 2026-03-26 18:30:21,159 | INFO     | **************************************
[2026-03-26 14:30:57] 2026-03-26 18:30:21,662 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-26 14:30:57] 2026-03-26 18:30:21,678 | INFO     | sufficient remaining disk space (27962376192 B)
[2026-03-26 14:30:57] 2026-03-26 18:30:21,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-26 14:30:57] 2026-03-26 18:30:21,679 | INFO     | current server update state: UPDATING_FINAL
[2026-03-26 14:30:57] 2026-03-26 18:30:21,679 | INFO     | update_server=False
[2026-03-26 14:30:57] 2026-03-26 18:30:21,679 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-26 14:30:57] 2026-03-26 18:30:21,679 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-26 14:30:57] 2026-03-26 18:30:21,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-26 14:30:57] 2026-03-26 18:30:21,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 14:30:57] 2026-03-26 18:30:21,680 | INFO     | aborting loop
[2026-03-26 14:30:57] 2026-03-26 18:30:21,890 | INFO     | all data control threads have been joined
[2026-03-26 14:30:57] 2026-03-26 18:30:22,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-26 14:30:57] 2026-03-26 18:30:22,238 | INFO     | job.realtimelogging is not enabled
[2026-03-26 14:30:57] 2026-03-26 18:30:22,684 | INFO     | [job] retrieve thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:22,685 | INFO     | [job] queue monitor thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:22,685 | INFO     | [job] job monitor thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:22,701 | INFO     | all payload control threads have been joined
[2026-03-26 14:30:57] 2026-03-26 18:30:22,815 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:22,832 | INFO     | [data] copytool_in thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:22,892 | INFO     | [data] control thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:23,014 | INFO     | all job control threads have been joined
[2026-03-26 14:30:57] 2026-03-26 18:30:23,244 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:23,296 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:23,463 | INFO     | [payload] failed_post thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:23,706 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:23,707 | INFO     | [payload] control thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:23,725 | INFO     | [job] validate thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:24,020 | INFO     | [job] control thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:24,065 | INFO     | [payload] validate_post thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:24,215 | INFO     | [data] copytool_out thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:25,687 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 14:30:57] 2026-03-26 18:30:51,405 | INFO     | [monitor] cgroup control has ended
[2026-03-26 14:30:57] 2026-03-26 18:30:51,765 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148258469696)>', '<ExcThread(monitor, started 140147467220736)>']
[2026-03-26 14:30:57] 2026-03-26 18:30:52,839 | INFO     | PID=10129 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-26 14:30:57] 2026-03-26 18:30:52,839 | INFO     | .. there are 3 such processes running
[2026-03-26 14:30:57] 2026-03-26 18:30:52,839 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 14:30:57] 2026-03-26 18:30:52,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 14:30:57] 2026-03-26 18:30:52,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 14:30:57] 2026-03-26 18:30:52,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 14:30:57] 2026-03-26 18:30:52,840 | INFO     | [monitor] control thread has ended
[2026-03-26 14:30:57] 2026-03-26 18:30:56,791 | INFO     | all workflow threads have been joined
[2026-03-26 14:30:57] 2026-03-26 18:30:56,791 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 14:30:57] 2026-03-26 18:30:56,792 | INFO     | traces error code: 0
[2026-03-26 14:30:57] 2026-03-26 18:30:56,792 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 14:30:57] 2026-03-26 18:30:56,894 [wrapper] ==== pilot stdout END ====
[2026-03-26 14:30:57] 2026-03-26 18:30:56,897 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 14:30:57] 2026-03-26 18:30:56,899 [wrapper] pilotpid: 10129
[2026-03-26 14:30:57] 2026-03-26 18:30:56,902 [wrapper] Pilot exit status: 0
[2026-03-26 14:30:57] 2026-03-26 18:30:56,913 [wrapper] pandaids: 7058174154
[2026-03-26 14:30:57] 2026-03-26 18:30:56,947 [wrapper] cleanup supervisor_pilot 24647 10130
[2026-03-26 14:30:57] 2026-03-26 18:30:56,949 [wrapper] Test setup, not cleaning
[2026-03-26 14:30:57] 2026-03-26 18:30:56,952 [wrapper] apfmon messages muted
[2026-03-26 14:30:57] 2026-03-26 18:30:56,954 [wrapper] ==== wrapper stdout END ====
[2026-03-26 14:30:57] 2026-03-26 18:30:56,956 [wrapper] ==== wrapper stderr END ====
[2026-03-26 14:30:57]  *** Error codes and diagnostics ***
[2026-03-26 14:30:57]     "exeErrorCode": 0,
[2026-03-26 14:30:57]     "exeErrorDiag": "",
[2026-03-26 14:30:57]     "pilotErrorCode": 0,
[2026-03-26 14:30:57]     "pilotErrorDiag": "",
[2026-03-26 14:30:57]  *** Listing of results directory ***
[2026-03-26 14:30:57] total 477716
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas    585013 Mar 18 00:11 pilot3.tar.gz
[2026-03-26 14:30:57] -rwx------ 1 boincer umatlas     36322 Mar 18 00:12 runpilot2-wrapper.sh
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas      5111 Mar 18 00:14 queuedata.json
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas       100 Mar 26 09:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 14:30:57] -rwxr-xr-x 1 boincer umatlas      7986 Mar 26 09:22 run_atlas
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas       105 Mar 26 09:22 job.xml
[2026-03-26 14:30:57] -rw-r--r-- 2 boincer umatlas 245224248 Mar 26 09:22 EVNT.49136781._000002.pool.root.1
[2026-03-26 14:30:57] -rw-r--r-- 2 boincer umatlas     15845 Mar 26 09:22 start_atlas.sh
[2026-03-26 14:30:57] drwxrwx--x 2 boincer umatlas      4096 Mar 26 09:22 shared
[2026-03-26 14:30:57] -rw-r--r-- 2 boincer umatlas    597541 Mar 26 09:22 input.tar.gz
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas         0 Mar 26 09:22 boinc_lockfile
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas      2632 Mar 26 09:22 pandaJob.out
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas        57 Mar 26 09:22 setup.sh.local
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas   1011816 Mar 26 09:22 agis_schedconf.cvmfs.json
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas       445 Mar 26 09:22 workernode_map.json
[2026-03-26 14:30:57] drwx------ 5 boincer umatlas      4096 Mar 26 09:22 pilot3
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas      5952 Mar 26 14:29 init_data.xml
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas 233794258 Mar 26 14:29 HITS.49182338._000027.pool.root.1
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas       531 Mar 26 14:29 boinc_task_state.xml
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas        95 Mar 26 14:30 pilot_heartbeat.json
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas      1055 Mar 26 14:30 memory_monitor_summary.json
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas   1511579 Mar 26 14:30 agis_ddmendpoints.agis.ALL.json
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas    513428 Mar 26 14:30 log.49182338._000027.job.log.tgz.1
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas      6419 Mar 26 14:30 heartbeat.json
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas      8192 Mar 26 14:30 boinc_mmap_file
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas        29 Mar 26 14:30 wrapper_checkpoint.txt
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas      4889 Mar 26 14:30 pilotlog.txt
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas   2595786 Mar 26 14:30 log.49182338._000027.job.log.1
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas       357 Mar 26 14:30 output.list
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas       620 Mar 26 14:30 runtime_log
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas   3123200 Mar 26 14:30 result.tar.gz
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas      9342 Mar 26 14:30 runtime_log.err
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas       664 Mar 26 14:30 HMWKDmlRxM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmtZ1LDmz6F6Wn.diag
[2026-03-26 14:30:57] -rw-r--r-- 1 boincer umatlas     21403 Mar 26 14:30 stderr.txt
[2026-03-26 14:30:57] HITS file was successfully produced:
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas 233794258 Mar 26 14:29 shared/HITS.pool.root.1
[2026-03-26 14:30:57]  *** Contents of shared directory: ***
[2026-03-26 14:30:57] total 471452
[2026-03-26 14:30:57] -rw-r--r-- 2 boincer umatlas 245224248 Mar 26 09:22 ATLAS.root_0
[2026-03-26 14:30:57] -rw-r--r-- 2 boincer umatlas     15845 Mar 26 09:22 start_atlas.sh
[2026-03-26 14:30:57] -rw-r--r-- 2 boincer umatlas    597541 Mar 26 09:22 input.tar.gz
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas 233794258 Mar 26 14:29 HITS.pool.root.1
[2026-03-26 14:30:57] -rw------- 1 boincer umatlas   3123200 Mar 26 14:30 result.tar.gz
14:30:58 (3699): run_atlas exited; CPU time 142748.943924
14:30:58 (3699): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN