Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:42:27 (14550): wrapper (7.7.26015): starting
09:42:27 (14550): wrapper: running run_atlas (--nthreads 8)
[2026-03-27 09:42:27] Arguments: --nthreads 8
[2026-03-27 09:42:27] Threads: 8
[2026-03-27 09:42:27] Checking for CVMFS
[2026-03-27 09:42:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-27 09:42:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-27 09:42:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-27 09:42:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-27 09:42:32] 2.11.2.0 11275 146070 136780 157751 0 53 13738705 25165825 4784 130560 153 40471510 99.821 35601844 1166 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-27 09:42:32] CVMFS is ok
[2026-03-27 09:42:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-27 09:42:32] Checking for apptainer binary...
[2026-03-27 09:42:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-27 09:42:32] Running /usr/bin/apptainer --version
[2026-03-27 09:42:32] apptainer version 1.3.2-1.el7
[2026-03-27 09:42:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-27 09:42:36] cg-vwn441.simple-grid.lan
[2026-03-27 09:42:36] apptainer works
[2026-03-27 09:42:36] Set ATHENA_PROC_NUMBER=8
[2026-03-27 09:42:36] Set ATHENA_CORE_NUMBER=8
[2026-03-27 09:42:36] Starting ATLAS job with PandaID=7056912455
[2026-03-27 09:42:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 19:20:49]  *** The last 200 lines of the pilot log: ***
[2026-03-27 19:20:49] 2026-03-27 18:19:43,160 | INFO     | extracted standard info from prmon json
[2026-03-27 19:20:49] 2026-03-27 18:19:43,161 | INFO     | extracted standard memory fields from prmon json
[2026-03-27 19:20:49] 2026-03-27 18:19:43,161 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-27 19:20:49] 2026-03-27 18:19:43,161 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-27 19:20:49] 2026-03-27 18:19:43,161 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-27 19:20:49] 2026-03-27 18:19:43,168 | INFO     | fitting pss+swap vs Time
[2026-03-27 19:20:49] 2026-03-27 18:19:43,169 | INFO     | sum of square deviations: 53874050119.5
[2026-03-27 19:20:49] 2026-03-27 18:19:43,174 | INFO     | sum of deviations: 296904418733.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,174 | INFO     | mean x: 1774618537.5
[2026-03-27 19:20:49] 2026-03-27 18:19:43,174 | INFO     | mean y: 2482333.4265232976
[2026-03-27 19:20:49] 2026-03-27 18:19:43,174 | INFO     | intersect: -9777589596.946735
[2026-03-27 19:20:49] 2026-03-27 18:19:43,174 | INFO     | chi2: 7.626908636455511
[2026-03-27 19:20:49] 2026-03-27 18:19:43,175 | INFO     | sum of square deviations: 52438758092.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,180 | INFO     | sum of deviations: 331068260452.00006
[2026-03-27 19:20:49] 2026-03-27 18:19:43,180 | INFO     | mean x: 1774618385.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,180 | INFO     | mean y: 2485934.450271248
[2026-03-27 19:20:49] 2026-03-27 18:19:43,180 | INFO     | intersect: -11201437328.898695
[2026-03-27 19:20:49] 2026-03-27 18:19:43,181 | INFO     | chi2: 6.880151644772435
[2026-03-27 19:20:49] 2026-03-27 18:19:43,181 | INFO     | current chi2=6.880151644772435 (change=9.791083481893125 %)
[2026-03-27 19:20:49] 2026-03-27 18:19:43,181 | INFO     | right removable region: 552
[2026-03-27 19:20:49] 2026-03-27 18:19:43,182 | INFO     | sum of square deviations: 52438758092.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,186 | INFO     | sum of deviations: 94808128210.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,192 | INFO     | mean x: 1774618690.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,192 | INFO     | mean y: 2503801.12477396
[2026-03-27 19:20:49] 2026-03-27 18:19:43,192 | INFO     | intersect: -3205967993.539067
[2026-03-27 19:20:49] 2026-03-27 18:19:43,193 | INFO     | chi2: 2.7842355544779327
[2026-03-27 19:20:49] 2026-03-27 18:19:43,193 | INFO     | current chi2=2.7842355544779327 (change=63.49457313321294 %)
[2026-03-27 19:20:49] 2026-03-27 18:19:43,193 | INFO     | sum of square deviations: 51029187477.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,198 | INFO     | sum of deviations: -25242104298.499992
[2026-03-27 19:20:49] 2026-03-27 18:19:43,198 | INFO     | mean x: 1774618842.5
[2026-03-27 19:20:49] 2026-03-27 18:19:43,198 | INFO     | mean y: 2516765.7901459853
[2026-03-27 19:20:49] 2026-03-27 18:19:43,198 | INFO     | intersect: 880349945.725815
[2026-03-27 19:20:49] 2026-03-27 18:19:43,199 | INFO     | chi2: 0.9266736537040857
[2026-03-27 19:20:49] 2026-03-27 18:19:43,199 | INFO     | current chi2=0.9266736537040857 (change=66.71712448274354 %)
[2026-03-27 19:20:49] 2026-03-27 18:19:43,200 | INFO     | sum of square deviations: 49645105712.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,204 | INFO     | sum of deviations: -37007282787.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,205 | INFO     | mean x: 1774618995.0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,205 | INFO     | mean y: 2518059.3812154694
[2026-03-27 19:20:49] 2026-03-27 18:19:43,205 | INFO     | intersect: 1325384151.5219429
[2026-03-27 19:20:49] 2026-03-27 18:19:43,205 | INFO     | chi2: 0.9048427601187976
[2026-03-27 19:20:49] 2026-03-27 18:19:43,205 | INFO     | current chi2=0.9048427601187976 (change=2.3558340628360375 %)
[2026-03-27 19:20:49] 2026-03-27 18:19:43,206 | INFO     | left removable region: 30
[2026-03-27 19:20:49] 2026-03-27 18:19:43,206 | INFO     | sum of square deviations: 44105052070.5
[2026-03-27 19:20:49] 2026-03-27 18:19:43,210 | INFO     | sum of deviations: 44588967205.49997
[2026-03-27 19:20:49] 2026-03-27 18:19:43,216 | INFO     | mean x: 1774619269.5
[2026-03-27 19:20:49] 2026-03-27 18:19:43,216 | INFO     | mean y: 2516733.0363984676
[2026-03-27 19:20:49] 2026-03-27 18:19:43,216 | INFO     | intersect: -1791573437.9376764
[2026-03-27 19:20:49] 2026-03-27 18:19:43,217 | INFO     | chi2: 0.016100420964534217
[2026-03-27 19:20:49] 2026-03-27 18:19:43,217 | INFO     | current memory leak: 1.01 B/s (using 522 data points, chi2=0.02)
[2026-03-27 19:20:49] 2026-03-27 18:19:43,217 | INFO     | could have reported an average CPU frequency of 1999 MHz (22 samples)
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | ..............................
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | . Timing measurements:
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | . get job = 0 s
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | . initial setup = 94 s
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | . payload setup = 157 s
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | . stage-in = 0 s
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | . payload execution = 34141 s
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | . stage-out = 3 s
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | . log creation = 0 s
[2026-03-27 19:20:49] 2026-03-27 18:19:43,218 | INFO     | ..............................
[2026-03-27 19:20:49] 2026-03-27 18:19:43,397 | INFO     | 
[2026-03-27 19:20:49] 2026-03-27 18:19:43,397 | INFO     | job summary report
[2026-03-27 19:20:49] 2026-03-27 18:19:43,397 | INFO     | --------------------------------------------------
[2026-03-27 19:20:49] 2026-03-27 18:19:43,397 | INFO     | PanDA job id: 7056912455
[2026-03-27 19:20:49] 2026-03-27 18:19:43,397 | INFO     | task id: 49177032
[2026-03-27 19:20:49] 2026-03-27 18:19:43,397 | INFO     | errors: (none)
[2026-03-27 19:20:49] 2026-03-27 18:19:43,397 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | pilot state: finished 
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | transexitcode: 0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | exeerrorcode: 0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | exeerrordiag: 
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | exitcode: 0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | exitmsg: OK
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | cpuconsumptiontime: 134649 s
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | nevents: 400
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | neventsw: 0
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | pid: 23134
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | pgrp: 23134
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | corecount: 8
[2026-03-27 19:20:49] 2026-03-27 18:19:43,398 | INFO     | event service: False
[2026-03-27 19:20:49] 2026-03-27 18:19:43,399 | INFO     | sizes: {0: 2279826, 1: 2279910, 2: 2280371, 12: 2280371, 34303: 2320226, 34304: 2320225, 34307: 2329407, 34308: 2329463, 34311: 2329657}
[2026-03-27 19:20:49] 2026-03-27 18:19:43,399 | INFO     | --------------------------------------------------
[2026-03-27 19:20:49] 2026-03-27 18:19:43,399 | INFO     | 
[2026-03-27 19:20:49] 2026-03-27 18:19:43,399 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-03-27 19:20:49] 2026-03-27 18:19:43,511 | INFO     | PID=18642 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-27 19:20:49] 2026-03-27 18:19:43,512 | INFO     | .. there are 9 such processes running
[2026-03-27 19:20:49] 2026-03-27 18:19:43,911 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,911 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,911 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,911 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,913 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,913 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-27 19:20:49] 2026-03-27 18:19:43,913 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,913 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 19:20:49] 2026-03-27 18:19:43,913 | INFO     | job 7056912455 has completed (purged errors)
[2026-03-27 19:20:49] 2026-03-27 18:19:43,913 | INFO     | overall cleanup function is called
[2026-03-27 19:20:49] 2026-03-27 18:19:44,922 | INFO     | --- collectZombieJob: --- 10, [23134]
[2026-03-27 19:20:49] 2026-03-27 18:19:44,922 | INFO     | zombie collector waiting for pid 23134
[2026-03-27 19:20:49] 2026-03-27 18:19:44,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 19:20:49] 2026-03-27 18:19:44,922 | INFO     | collected zombie processes
[2026-03-27 19:20:49] 2026-03-27 18:19:44,922 | INFO     | will attempt to kill all subprocesses of pid=23134
[2026-03-27 19:20:49] 2026-03-27 18:19:45,041 | INFO     | process IDs to be killed: [23134] (in reverse order)
[2026-03-27 19:20:49] 2026-03-27 18:19:45,826 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 19:20:49] 2026-03-27 18:19:45,827 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 19:20:49] 2026-03-27 18:19:45,830 | INFO     | did not find any defunct processes belonging to 23134
[2026-03-27 19:20:49] 2026-03-27 18:19:45,835 | INFO     | did not find any defunct processes belonging to 23134
[2026-03-27 19:20:49] 2026-03-27 18:19:45,836 | INFO     | ready for new job
[2026-03-27 19:20:49] 2026-03-27 18:19:45,836 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 19:20:49] 2026-03-27 18:19:45,839 | INFO     | **************************************
[2026-03-27 19:20:49] 2026-03-27 18:19:45,839 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 19:20:49] 2026-03-27 18:19:45,839 | INFO     | **************************************
[2026-03-27 19:20:49] 2026-03-27 18:19:45,839 | INFO     | 
[2026-03-27 19:20:49] 2026-03-27 18:19:45,840 | INFO     | pilot is running in a VM
[2026-03-27 19:20:49] 2026-03-27 18:19:45,840 | INFO     | architecture information:
[2026-03-27 19:20:49] 2026-03-27 18:19:45,844 | INFO     | executing command: cat /etc/os-release
[2026-03-27 19:20:49] 2026-03-27 18:19:45,976 | INFO     | cat /etc/os-release:
[2026-03-27 19:20:49] NAME="CentOS Linux"
[2026-03-27 19:20:49] VERSION="7 (Core)"
[2026-03-27 19:20:49] ID="centos"
[2026-03-27 19:20:49] ID_LIKE="rhel fedora"
[2026-03-27 19:20:49] VERSION_ID="7"
[2026-03-27 19:20:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 19:20:49] ANSI_COLOR="0;31"
[2026-03-27 19:20:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 19:20:49] HOME_URL="https://www.centos.org/"
[2026-03-27 19:20:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 19:20:49] 
[2026-03-27 19:20:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 19:20:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 19:20:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 19:20:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 19:20:49] 
[2026-03-27 19:20:49] 2026-03-27 18:19:45,977 | INFO     | **************************************
[2026-03-27 19:20:49] 2026-03-27 18:19:46,480 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-03-27 19:20:49] 2026-03-27 18:19:46,773 | INFO     | sufficient remaining disk space (497070112768 B)
[2026-03-27 19:20:49] 2026-03-27 18:19:46,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 19:20:49] 2026-03-27 18:19:46,774 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 19:20:49] 2026-03-27 18:19:46,774 | INFO     | update_server=False
[2026-03-27 19:20:49] 2026-03-27 18:19:46,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 19:20:49] 2026-03-27 18:19:46,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 19:20:49] 2026-03-27 18:19:46,828 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-27 19:20:49] 2026-03-27 18:19:46,828 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-27 19:20:49] 2026-03-27 18:19:46,828 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 19:20:49] 2026-03-27 18:19:46,828 | INFO     | will abort loop
[2026-03-27 19:20:49] 2026-03-27 18:19:47,291 | INFO     | all data control threads have been joined
[2026-03-27 19:20:49] 2026-03-27 18:19:47,416 | INFO     | all payload control threads have been joined
[2026-03-27 19:20:49] 2026-03-27 18:19:47,608 | INFO     | all job control threads have been joined
[2026-03-27 19:20:49] 2026-03-27 18:19:47,617 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 19:20:49] 2026-03-27 18:19:47,780 | INFO     | [job] retrieve thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:47,834 | INFO     | [job] job monitor thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:47,839 | INFO     | [data] copytool_in thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:48,297 | INFO     | [data] control thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:48,408 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 19:20:49] 2026-03-27 18:19:48,413 | INFO     | [payload] validate_post thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:48,422 | INFO     | [payload] control thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:48,614 | INFO     | [job] control thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:48,953 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:49,013 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:49,027 | INFO     | [job] validate thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:49,127 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:49,210 | INFO     | [payload] failed_post thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:49,268 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:49,414 | INFO     | [job] queue monitor thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:49,624 | INFO     | [data] copytool_out thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:19:50,808 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 19:20:49] 2026-03-27 18:20:15,702 | INFO     | PID=18642 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-27 19:20:49] 2026-03-27 18:20:15,702 | INFO     | .. there are 9 such processes running
[2026-03-27 19:20:49] 2026-03-27 18:20:15,702 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 19:20:49] 2026-03-27 18:20:15,702 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 19:20:49] 2026-03-27 18:20:15,702 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 19:20:49] 2026-03-27 18:20:39,990 | INFO     | [monitor] cgroup control has ended
[2026-03-27 19:20:49] 2026-03-27 18:20:40,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140335992141632)>', '<ExcThread(monitor, started 140335539795712)>']
[2026-03-27 19:20:49] 2026-03-27 18:20:40,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 19:20:49] 2026-03-27 18:20:40,851 | INFO     | [monitor] control thread has ended
[2026-03-27 19:20:49] 2026-03-27 18:20:45,333 | INFO     | all workflow threads have been joined
[2026-03-27 19:20:49] 2026-03-27 18:20:45,333 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 19:20:49] 2026-03-27 18:20:45,333 | INFO     | traces error code: 0
[2026-03-27 19:20:49] 2026-03-27 18:20:45,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 19:20:49] 2026-03-27 18:20:45,723 [wrapper] ==== pilot stdout END ====
[2026-03-27 19:20:49] 2026-03-27 18:20:45,801 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 19:20:49] 2026-03-27 18:20:45,916 [wrapper] pilotpid: 18642
[2026-03-27 19:20:49] 2026-03-27 18:20:46,012 [wrapper] Pilot exit status: 0
[2026-03-27 19:20:49] 2026-03-27 18:20:46,422 [wrapper] pandaids: 7056912455
[2026-03-27 19:20:49] 2026-03-27 18:20:47,247 [wrapper] cleanup supervisor_pilot  3932 18643
[2026-03-27 19:20:49] 2026-03-27 18:20:47,328 [wrapper] Test setup, not cleaning
[2026-03-27 19:20:49] 2026-03-27 18:20:47,414 [wrapper] apfmon messages muted
[2026-03-27 19:20:49] 2026-03-27 18:20:47,479 [wrapper] ==== wrapper stdout END ====
[2026-03-27 19:20:49] 2026-03-27 18:20:47,576 [wrapper] ==== wrapper stderr END ====
[2026-03-27 19:20:49]  *** Error codes and diagnostics ***
[2026-03-27 19:20:49]     "exeErrorCode": 0,
[2026-03-27 19:20:49]     "exeErrorDiag": "",
[2026-03-27 19:20:49]     "pilotErrorCode": 0,
[2026-03-27 19:20:49]     "pilotErrorDiag": "",
[2026-03-27 19:20:49]  *** Listing of results directory ***
[2026-03-27 19:20:49] total 478640
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-27 19:20:49] -rwx------. 1 boinc boinc     36322 Mar 16 14:33 runpilot2-wrapper.sh
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc       100 Mar 27 09:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 19:20:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar 27 09:42 run_atlas
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc       105 Mar 27 09:42 job.xml
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc      6391 Mar 27 09:42 init_data.xml
[2026-03-27 19:20:49] -rw-r--r--. 2 boinc boinc 235385793 Mar 27 09:42 EVNT.49136164._000025.pool.root.1
[2026-03-27 19:20:49] -rw-r--r--. 2 boinc boinc     15845 Mar 27 09:42 start_atlas.sh
[2026-03-27 19:20:49] drwxrwx--x. 2 boinc boinc        68 Mar 27 09:42 shared
[2026-03-27 19:20:49] -rw-r--r--. 2 boinc boinc    596142 Mar 27 09:42 input.tar.gz
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc         0 Mar 27 09:42 boinc_lockfile
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc      2629 Mar 27 09:42 pandaJob.out
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc      5118 Mar 27 09:46 queuedata.json
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc       415 Mar 27 09:47 workernode_map.json
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc   1010117 Mar 27 09:47 agis_schedconf.cvmfs.json
[2026-03-27 19:20:49] drwx------. 5 boinc boinc      4096 Mar 27 09:47 pilot3
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc 239894405 Mar 27 19:18 HITS.49177032._000607.pool.root.1
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc       532 Mar 27 19:18 boinc_task_state.xml
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc        95 Mar 27 19:19 pilot_heartbeat.json
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc      1018 Mar 27 19:19 memory_monitor_summary.json
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc   1511579 Mar 27 19:19 agis_ddmendpoints.agis.ALL.json
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc    729726 Mar 27 19:19 log.49177032._000607.job.log.tgz.1
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc      6317 Mar 27 19:19 heartbeat.json
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc      8192 Mar 27 19:20 boinc_mmap_file
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc        29 Mar 27 19:20 wrapper_checkpoint.txt
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc      5066 Mar 27 19:20 pilotlog.txt
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc   4730622 Mar 27 19:20 log.49177032._000607.job.log.1
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc       357 Mar 27 19:20 output.list
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc       620 Mar 27 19:20 runtime_log
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc   5478400 Mar 27 19:20 result.tar.gz
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc       658 Mar 27 19:20 tb6KDm2FNM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm3JxLDmcHuJOn.diag
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc      8816 Mar 27 19:20 runtime_log.err
[2026-03-27 19:20:49] -rw-r--r--. 1 boinc boinc     20800 Mar 27 19:20 stderr.txt
[2026-03-27 19:20:49] HITS file was successfully produced:
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc 239894405 Mar 27 19:18 shared/HITS.pool.root.1
[2026-03-27 19:20:49]  *** Contents of shared directory: ***
[2026-03-27 19:20:49] total 470096
[2026-03-27 19:20:49] -rw-r--r--. 2 boinc boinc 235385793 Mar 27 09:42 ATLAS.root_0
[2026-03-27 19:20:49] -rw-r--r--. 2 boinc boinc     15845 Mar 27 09:42 start_atlas.sh
[2026-03-27 19:20:49] -rw-r--r--. 2 boinc boinc    596142 Mar 27 09:42 input.tar.gz
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc 239894405 Mar 27 19:18 HITS.pool.root.1
[2026-03-27 19:20:49] -rw-------. 1 boinc boinc   5478400 Mar 27 19:20 result.tar.gz
19:20:51 (14550): run_atlas exited; CPU time 135146.070519
19:20:51 (14550): called boinc_finish(0)

</stderr_txt>
]]>

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