Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:06 (2210299): wrapper (7.7.26015): starting
00:00:06 (2210299): wrapper: running run_atlas (--nthreads 9)
[2026-03-26 00:00:06] Arguments: --nthreads 9
[2026-03-26 00:00:06] Threads: 9
[2026-03-26 00:00:06] Checking for CVMFS
[2026-03-26 00:00:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 00:00:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 00:00:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 00:00:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 00:00:07] 2.13.3.0 2033223 125834 431380 157706 3 683 36646879 40960001 38902 16776704 0 870622259 99.710 717970615 31740 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-26 00:00:07] CVMFS is ok
[2026-03-26 00:00:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 00:00:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 00:00:07] Further information can be found at the LHC@home message board.
[2026-03-26 00:00:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 00:00:07] Checking for apptainer binary...
[2026-03-26 00:00:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 00:00:07] Running /usr/bin/apptainer --version
[2026-03-26 00:00:07] apptainer version 1.4.5-2.el9
[2026-03-26 00:00:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 00:00:07] c-212-17.aglt2.org
[2026-03-26 00:00:07] apptainer works
[2026-03-26 00:00:07] Set ATHENA_PROC_NUMBER=9
[2026-03-26 00:00:07] Set ATHENA_CORE_NUMBER=9
[2026-03-26 00:00:07] Starting ATLAS job with PandaID=7057534196
[2026-03-26 00:00:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:00:04 (2210299): BOINC client no longer exists - exiting
03:00:04 (2210299): timer handler: client dead, exiting
03:12:34 (2984521): wrapper (7.7.26015): starting
03:12:34 (2984521): wrapper: running run_atlas (--nthreads 8)
[2026-03-26 03:12:34] Arguments: --nthreads 8
[2026-03-26 03:12:34] Threads: 8
[2026-03-26 03:12:34] This job has been restarted, cleaning up previous attempt
[2026-03-26 03:12:34] Checking for CVMFS
[2026-03-26 03:12:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 03:12:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 03:12:35] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 03:12:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 03:12:35] 2.13.3.0 2033223 126026 422760 157711 3 412 23731309 40960000 33375 16776704 0 871436059 99.710 718929044 31715 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-26 03:12:35] CVMFS is ok
[2026-03-26 03:12:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 03:12:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 03:12:35] Further information can be found at the LHC@home message board.
[2026-03-26 03:12:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 03:12:35] Checking for apptainer binary...
[2026-03-26 03:12:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 03:12:35] Running /usr/bin/apptainer --version
[2026-03-26 03:12:35] apptainer version 1.4.5-2.el9
[2026-03-26 03:12:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 03:12:36] c-212-17.aglt2.org
[2026-03-26 03:12:36] apptainer works
[2026-03-26 03:12:36] Set ATHENA_PROC_NUMBER=8
[2026-03-26 03:12:36] Set ATHENA_CORE_NUMBER=8
[2026-03-26 03:12:36] Starting ATLAS job with PandaID=7057534196
[2026-03-26 03:12:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 23:52:22]  *** The last 200 lines of the pilot log: ***
[2026-03-26 23:52:22] 2026-03-27 03:51:41,211 | INFO     | total number of processed events: 400 (read)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,233 | INFO     | time since job start (74318s) is within the limit (345600.0s)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,276 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-7057534196/memory_monitor_summary.json (trf name=prmon)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,277 | INFO     | extracted standard info from prmon json
[2026-03-26 23:52:22] 2026-03-27 03:51:41,277 | INFO     | extracted standard memory fields from prmon json
[2026-03-26 23:52:22] 2026-03-27 03:51:41,277 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-26 23:52:22] 2026-03-27 03:51:41,277 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-26 23:52:22] 2026-03-27 03:51:41,277 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-26 23:52:22] 2026-03-27 03:51:41,293 | INFO     | fitting pss+swap vs Time
[2026-03-26 23:52:22] 2026-03-27 03:51:41,295 | INFO     | sum of square deviations: 560295657217.2413
[2026-03-26 23:52:22] 2026-03-27 03:51:41,336 | INFO     | sum of deviations: 602082165953.207
[2026-03-26 23:52:22] 2026-03-27 03:51:41,337 | INFO     | mean x: 1774546352.5517242
[2026-03-26 23:52:22] 2026-03-27 03:51:41,337 | INFO     | mean y: 2520229.3776683086
[2026-03-26 23:52:22] 2026-03-27 03:51:41,337 | INFO     | intersect: -1904370708.944293
[2026-03-26 23:52:22] 2026-03-27 03:51:41,338 | INFO     | chi2: 2.439632290730228
[2026-03-26 23:52:22] 2026-03-27 03:51:41,339 | INFO     | sum of square deviations: 553423724329.728
[2026-03-26 23:52:22] 2026-03-27 03:51:41,365 | INFO     | sum of deviations: 675425622758.8218
[2026-03-26 23:52:22] 2026-03-27 03:51:41,365 | INFO     | mean x: 1774546200.0519373
[2026-03-26 23:52:22] 2026-03-27 03:51:41,365 | INFO     | mean y: 2521851.288540808
[2026-03-26 23:52:22] 2026-03-27 03:51:41,365 | INFO     | intersect: -2163221899.100942
[2026-03-26 23:52:22] 2026-03-27 03:51:41,366 | INFO     | chi2: 1.755083033450286
[2026-03-26 23:52:22] 2026-03-27 03:51:41,366 | INFO     | current chi2=1.755083033450286 (change=28.05952601467836 %)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,367 | INFO     | sum of square deviations: 546608211104.71436
[2026-03-26 23:52:22] 2026-03-27 03:51:41,399 | INFO     | sum of deviations: 670926778815.7385
[2026-03-26 23:52:22] 2026-03-27 03:51:41,399 | INFO     | mean x: 1774546047.5521524
[2026-03-26 23:52:22] 2026-03-27 03:51:41,399 | INFO     | mean y: 2521750.6390728476
[2026-03-26 23:52:22] 2026-03-27 03:51:41,399 | INFO     | intersect: -2175620544.622356
[2026-03-26 23:52:22] 2026-03-27 03:51:41,400 | INFO     | chi2: 1.7549714209040537
[2026-03-26 23:52:22] 2026-03-27 03:51:41,400 | INFO     | current chi2=1.7549714209040537 (change=0.00635938836540165 %)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,400 | INFO     | right removable region: 1207
[2026-03-26 23:52:22] 2026-03-27 03:51:41,401 | INFO     | sum of square deviations: 553423685899.728
[2026-03-26 23:52:22] 2026-03-27 03:51:41,429 | INFO     | sum of deviations: 382042397643.9482
[2026-03-26 23:52:22] 2026-03-27 03:51:41,430 | INFO     | mean x: 1774546505.0519373
[2026-03-26 23:52:22] 2026-03-27 03:51:41,430 | INFO     | mean y: 2525105.06430338
[2026-03-26 23:52:22] 2026-03-27 03:51:41,430 | INFO     | intersect: -1222489325.6399968
[2026-03-26 23:52:22] 2026-03-27 03:51:41,431 | INFO     | chi2: 0.8264114122750402
[2026-03-26 23:52:22] 2026-03-27 03:51:41,431 | INFO     | current chi2=0.8264114122750402 (change=66.12557493130738 %)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,432 | INFO     | sum of square deviations: 546608134244.71436
[2026-03-26 23:52:22] 2026-03-27 03:51:41,457 | INFO     | sum of deviations: 315085068482.0105
[2026-03-26 23:52:22] 2026-03-27 03:51:41,458 | INFO     | mean x: 1774546657.5521524
[2026-03-26 23:52:22] 2026-03-27 03:51:41,458 | INFO     | mean y: 2526603.2458609273
[2026-03-26 23:52:22] 2026-03-27 03:51:41,458 | INFO     | intersect: -1020387473.7499654
[2026-03-26 23:52:22] 2026-03-27 03:51:41,459 | INFO     | chi2: 0.7356613416433972
[2026-03-26 23:52:22] 2026-03-27 03:51:41,459 | INFO     | current chi2=0.7356613416433972 (change=10.98122185677661 %)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,459 | INFO     | left removable region: 20
[2026-03-26 23:52:22] 2026-03-27 03:51:41,460 | INFO     | sum of square deviations: 518593828672.76166
[2026-03-26 23:52:22] 2026-03-27 03:51:41,481 | INFO     | sum of deviations: 335029475477.069
[2026-03-26 23:52:22] 2026-03-27 03:51:41,482 | INFO     | mean x: 1774546627.0522325
[2026-03-26 23:52:22] 2026-03-27 03:51:41,482 | INFO     | mean y: 2529328.256950295
[2026-03-26 23:52:22] 2026-03-27 03:51:41,482 | INFO     | intersect: -1143888914.305792
[2026-03-26 23:52:22] 2026-03-27 03:51:41,483 | INFO     | chi2: 0.005948087429557906
[2026-03-26 23:52:22] 2026-03-27 03:51:41,483 | INFO     | current memory leak: 0.65 B/s (using 1187 data points, chi2=0.01)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,484 | INFO     | could have reported an average CPU frequency of 3274 MHz (45 samples)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,484 | INFO     | ..............................
[2026-03-26 23:52:22] 2026-03-27 03:51:41,484 | INFO     | . Timing measurements:
[2026-03-26 23:52:22] 2026-03-27 03:51:41,484 | INFO     | . get job = 0 s
[2026-03-26 23:52:22] 2026-03-27 03:51:41,484 | INFO     | . initial setup = 3 s
[2026-03-26 23:52:22] 2026-03-27 03:51:41,485 | INFO     | . payload setup = 24 s
[2026-03-26 23:52:22] 2026-03-27 03:51:41,485 | INFO     | . stage-in = 0 s
[2026-03-26 23:52:22] 2026-03-27 03:51:41,485 | INFO     | . payload execution = 74269 s
[2026-03-26 23:52:22] 2026-03-27 03:51:41,485 | INFO     | . stage-out = 4 s
[2026-03-26 23:52:22] 2026-03-27 03:51:41,485 | INFO     | . log creation = 0 s
[2026-03-26 23:52:22] 2026-03-27 03:51:41,485 | INFO     | ..............................
[2026-03-26 23:52:22] 2026-03-27 03:51:41,567 | INFO     | 
[2026-03-26 23:52:22] 2026-03-27 03:51:41,569 | INFO     | job summary report
[2026-03-26 23:52:22] 2026-03-27 03:51:41,569 | INFO     | --------------------------------------------------
[2026-03-26 23:52:22] 2026-03-27 03:51:41,569 | INFO     | PanDA job id: 7057534196
[2026-03-26 23:52:22] 2026-03-27 03:51:41,569 | INFO     | task id: 49176497
[2026-03-26 23:52:22] 2026-03-27 03:51:41,569 | INFO     | errors: (none)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | pilot state: finished 
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | transexitcode: 0
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | exeerrorcode: 0
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | exeerrordiag: 
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | exitcode: 0
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | exitmsg: OK
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | cpuconsumptiontime: 75234 s
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | nevents: 400
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | neventsw: 0
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | pid: 3025180
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | pgrp: 3025180
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | corecount: 8
[2026-03-26 23:52:22] 2026-03-27 03:51:41,570 | INFO     | event service: False
[2026-03-26 23:52:22] 2026-03-27 03:51:41,571 | INFO     | sizes: {0: 2279797, 1: 2280258, 11: 2280258, 74299: 2338651, 74304: 2347649, 74306: 2347705, 74307: 2348027}
[2026-03-26 23:52:22] 2026-03-27 03:51:41,571 | INFO     | --------------------------------------------------
[2026-03-26 23:52:22] 2026-03-27 03:51:41,571 | INFO     | 
[2026-03-26 23:52:22] 2026-03-27 03:51:41,571 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-03-26 23:52:22] 2026-03-27 03:51:41,615 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,615 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,617 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,617 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,617 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-26 23:52:22] 2026-03-27 03:51:41,617 | INFO     | job 7057534196 has completed (purged errors)
[2026-03-26 23:52:22] 2026-03-27 03:51:41,617 | INFO     | overall cleanup function is called
[2026-03-26 23:52:22] 2026-03-27 03:51:42,626 | INFO     | --- collectZombieJob: --- 10, [3025180]
[2026-03-26 23:52:22] 2026-03-27 03:51:42,626 | INFO     | zombie collector waiting for pid 3025180
[2026-03-26 23:52:22] 2026-03-27 03:51:42,626 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-26 23:52:22] 2026-03-27 03:51:42,626 | INFO     | collected zombie processes
[2026-03-26 23:52:22] 2026-03-27 03:51:42,626 | INFO     | will attempt to kill all subprocesses of pid=3025180
[2026-03-26 23:52:22] 2026-03-27 03:51:43,279 | INFO     | process IDs to be killed: [3025180] (in reverse order)
[2026-03-26 23:52:22] 2026-03-27 03:51:43,504 | WARNING  | found no corresponding commands to process id(s)
[2026-03-26 23:52:22] 2026-03-27 03:51:43,504 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-26 23:52:22] 2026-03-27 03:51:43,556 | INFO     | did not find any defunct processes belonging to 3025180
[2026-03-26 23:52:22] 2026-03-27 03:51:43,578 | INFO     | did not find any defunct processes belonging to 3025180
[2026-03-26 23:52:22] 2026-03-27 03:51:43,579 | INFO     | ready for new job
[2026-03-26 23:52:22] 2026-03-27 03:51:43,579 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-26 23:52:22] 2026-03-27 03:51:43,610 | INFO     | **************************************
[2026-03-26 23:52:22] 2026-03-27 03:51:43,610 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-26 23:52:22] 2026-03-27 03:51:43,610 | INFO     | **************************************
[2026-03-26 23:52:22] 2026-03-27 03:51:43,610 | INFO     | 
[2026-03-26 23:52:22] 2026-03-27 03:51:43,622 | INFO     | architecture information:
[2026-03-26 23:52:22] 2026-03-27 03:51:43,631 | INFO     | executing command: cat /etc/os-release
[2026-03-26 23:52:22] 2026-03-27 03:51:43,654 | INFO     | cat /etc/os-release:
[2026-03-26 23:52:22] NAME="CentOS Linux"
[2026-03-26 23:52:22] VERSION="7 (Core)"
[2026-03-26 23:52:22] ID="centos"
[2026-03-26 23:52:22] ID_LIKE="rhel fedora"
[2026-03-26 23:52:22] VERSION_ID="7"
[2026-03-26 23:52:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-26 23:52:22] ANSI_COLOR="0;31"
[2026-03-26 23:52:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-26 23:52:22] HOME_URL="https://www.centos.org/"
[2026-03-26 23:52:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-26 23:52:22] 
[2026-03-26 23:52:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-26 23:52:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-26 23:52:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-26 23:52:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-26 23:52:22] 
[2026-03-26 23:52:22] 2026-03-27 03:51:43,654 | INFO     | **************************************
[2026-03-26 23:52:22] 2026-03-27 03:51:44,157 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-03-26 23:52:22] 2026-03-27 03:51:44,182 | INFO     | sufficient remaining disk space (126843092992 B)
[2026-03-26 23:52:22] 2026-03-27 03:51:44,182 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-26 23:52:22] 2026-03-27 03:51:44,182 | INFO     | current server update state: UPDATING_FINAL
[2026-03-26 23:52:22] 2026-03-27 03:51:44,182 | INFO     | update_server=False
[2026-03-26 23:52:22] 2026-03-27 03:51:44,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-26 23:52:22] 2026-03-27 03:51:44,183 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-26 23:52:22] 2026-03-27 03:51:44,250 | INFO     | all data control threads have been joined
[2026-03-26 23:52:22] 2026-03-27 03:51:44,547 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-26 23:52:22] 2026-03-27 03:51:44,547 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-26 23:52:22] 2026-03-27 03:51:44,547 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 23:52:22] 2026-03-27 03:51:44,548 | INFO     | will abort loop
[2026-03-26 23:52:22] 2026-03-27 03:51:44,837 | INFO     | all job control threads have been joined
[2026-03-26 23:52:22] 2026-03-27 03:51:45,187 | INFO     | [job] retrieve thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:45,188 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:45,283 | INFO     | [data] control thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:45,415 | INFO     | all payload control threads have been joined
[2026-03-26 23:52:22] 2026-03-27 03:51:45,553 | INFO     | [job] job monitor thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:45,719 | INFO     | [payload] failed_post thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:45,842 | INFO     | [job] control thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:46,005 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:46,195 | INFO     | [data] copytool_out thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:46,424 | INFO     | [payload] control thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:46,516 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:46,527 | INFO     | [data] copytool_in thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:46,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-26 23:52:22] 2026-03-27 03:51:46,625 | INFO     | [job] validate thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:46,638 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:46,680 | INFO     | [payload] validate_post thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:46,829 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-26 23:52:22] 2026-03-27 03:51:47,612 | INFO     | [job] queue monitor thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:51:50,838 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 23:52:22] 2026-03-27 03:52:15,180 | INFO     | [monitor] cgroup control has ended
[2026-03-26 23:52:22] 2026-03-27 03:52:15,313 | INFO     | PID=3005783 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-26 23:52:22] 2026-03-27 03:52:15,313 | INFO     | .. there are 53 such processes running
[2026-03-26 23:52:22] 2026-03-27 03:52:15,318 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 23:52:22] 2026-03-27 03:52:15,319 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 23:52:22] 2026-03-27 03:52:15,319 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 23:52:22] 2026-03-27 03:52:16,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439792109376)>', '<ExcThread(monitor, started 140439415924480)>']
[2026-03-26 23:52:22] 2026-03-27 03:52:16,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 23:52:22] 2026-03-27 03:52:16,324 | INFO     | [monitor] control thread has ended
[2026-03-26 23:52:22] 2026-03-27 03:52:21,161 | INFO     | all workflow threads have been joined
[2026-03-26 23:52:22] 2026-03-27 03:52:21,161 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 23:52:22] 2026-03-27 03:52:21,161 | INFO     | traces error code: 0
[2026-03-26 23:52:22] 2026-03-27 03:52:21,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 23:52:22] 2026-03-27 03:52:22,426 [wrapper] ==== pilot stdout END ====
[2026-03-26 23:52:22] 2026-03-27 03:52:22,451 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 23:52:22] 2026-03-27 03:52:22,465 [wrapper] pilotpid: 3005783
[2026-03-26 23:52:22] 2026-03-27 03:52:22,472 [wrapper] Pilot exit status: 0
[2026-03-26 23:52:22] 2026-03-27 03:52:22,506 [wrapper] pandaids: 7057534196 7057534196
[2026-03-26 23:52:22] 2026-03-27 03:52:22,649 [wrapper] cleanup supervisor_pilot 3948385 3005784
[2026-03-26 23:52:22] 2026-03-27 03:52:22,659 [wrapper] Test setup, not cleaning
[2026-03-26 23:52:22] 2026-03-27 03:52:22,662 [wrapper] apfmon messages muted
[2026-03-26 23:52:22] 2026-03-27 03:52:22,664 [wrapper] ==== wrapper stdout END ====
[2026-03-26 23:52:22] 2026-03-27 03:52:22,666 [wrapper] ==== wrapper stderr END ====
[2026-03-26 23:52:22]  *** Error codes and diagnostics ***
[2026-03-26 23:52:22]     "exeErrorCode": 0,
[2026-03-26 23:52:22]     "exeErrorDiag": "",
[2026-03-26 23:52:22]     "pilotErrorCode": 0,
[2026-03-26 23:52:22]     "pilotErrorDiag": "",
[2026-03-26 23:52:22]  *** Listing of results directory ***
[2026-03-26 23:52:22] total 730328
[2026-03-26 23:52:22] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas    585013 Mar 17 14:33 pilot3.tar.gz
[2026-03-26 23:52:22] -rwx------. 1 boincer umatlas     36322 Mar 17 14:33 runpilot2-wrapper.sh
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas      5111 Mar 17 14:35 queuedata.json
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas       100 Mar 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 23:52:22] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 26 00:00 run_atlas
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas       105 Mar 26 00:00 job.xml
[2026-03-26 23:52:22] -rw-r--r--. 3 boincer umatlas 243928079 Mar 26 00:00 EVNT.49134174._000017.pool.root.1
[2026-03-26 23:52:22] -rw-r--r--. 3 boincer umatlas 243928079 Mar 26 00:00 ATLAS.root_0
[2026-03-26 23:52:22] -rw-r--r--. 2 boincer umatlas     15845 Mar 26 00:00 start_atlas.sh
[2026-03-26 23:52:22] drwxrwx--x. 2 boincer umatlas      4096 Mar 26 00:00 shared
[2026-03-26 23:52:22] -rw-r--r--. 2 boincer umatlas    597540 Mar 26 00:00 input.tar.gz
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas         0 Mar 26 00:00 boinc_lockfile
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas      2596 Mar 26 03:12 pandaJob.out
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas        57 Mar 26 03:12 setup.sh.local
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas   1012190 Mar 26 03:13 agis_schedconf.cvmfs.json
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas       430 Mar 26 03:13 workernode_map.json
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas      6960 Mar 26 23:46 init_data.xml
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas 235886633 Mar 26 23:50 HITS.49176497._000426.pool.root.1
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas       531 Mar 26 23:51 boinc_task_state.xml
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas      1051 Mar 26 23:51 memory_monitor_summary.json
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas   1511579 Mar 26 23:51 agis_ddmendpoints.agis.ALL.json
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas   1206792 Mar 26 23:51 log.49176497._000426.job.log.tgz.1
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas      6348 Mar 26 23:51 heartbeat.json
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas        96 Mar 26 23:52 pilot_heartbeat.json
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas      5007 Mar 26 23:52 pilotlog.txt
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas      8192 Mar 26 23:52 boinc_mmap_file
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas        29 Mar 26 23:52 wrapper_checkpoint.txt
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas   8874724 Mar 26 23:52 log.49176497._000426.job.log.1
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas       357 Mar 26 23:52 output.list
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas       620 Mar 26 23:52 runtime_log
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas  10096640 Mar 26 23:52 result.tar.gz
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas      9427 Mar 26 23:52 runtime_log.err
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas       787 Mar 26 23:52 jx6KDmhPoM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmuu0LDm6og8Nn.diag
[2026-03-26 23:52:22] -rw-r--r--. 1 boincer umatlas     23437 Mar 26 23:52 stderr.txt
[2026-03-26 23:52:22] HITS file was successfully produced:
[2026-03-26 23:52:22] -rw-------. 1 boincer umatlas 235886633 Mar 26 23:50 shared/HITS.pool.root.1
[2026-03-26 23:52:22]  *** Contents of shared directory: ***
[2026-03-26 23:52:23] total 479040
[2026-03-26 23:52:23] -rw-r--r--. 3 boincer umatlas 243928079 Mar 26 00:00 ATLAS.root_0
[2026-03-26 23:52:23] -rw-r--r--. 2 boincer umatlas     15845 Mar 26 00:00 start_atlas.sh
[2026-03-26 23:52:23] -rw-r--r--. 2 boincer umatlas    597540 Mar 26 00:00 input.tar.gz
[2026-03-26 23:52:23] -rw-------. 1 boincer umatlas 235886633 Mar 26 23:50 HITS.pool.root.1
[2026-03-26 23:52:23] -rw-------. 1 boincer umatlas  10096640 Mar 26 23:52 result.tar.gz
23:52:24 (2984521): run_atlas exited; CPU time 79278.066155
23:52:24 (2984521): called boinc_finish(0)

</stderr_txt>
]]>

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