Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:10:25 (3797): wrapper (7.7.26015): starting
22:10:25 (3797): wrapper: running run_atlas (--nthreads 8)
[2026-03-26 22:10:25] Arguments: --nthreads 8
[2026-03-26 22:10:25] Threads: 8
[2026-03-26 22:10:25] Checking for CVMFS
[2026-03-26 22:10:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 22:10:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 22:10:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 22:10:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 22:10:30] 2.11.2.0 2053 145368 142024 157733 3 56 18935637 25165825 4777 130560 160 33521203 99.808 24223459 842 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-26 22:10:30] CVMFS is ok
[2026-03-26 22:10:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 22:10:30] Checking for apptainer binary...
[2026-03-26 22:10:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 22:10:30] Running /usr/bin/apptainer --version
[2026-03-26 22:10:30] apptainer version 1.3.2-1.el7
[2026-03-26 22:10:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 22:10:43] cg-vwn436.simple-grid.lan
[2026-03-26 22:10:43] apptainer works
[2026-03-26 22:10:43] Set ATHENA_PROC_NUMBER=8
[2026-03-26 22:10:43] Set ATHENA_CORE_NUMBER=8
[2026-03-26 22:10:43] Starting ATLAS job with PandaID=7065307439
[2026-03-26 22:10:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 06:19:52]  *** The last 200 lines of the pilot log: ***
[2026-03-27 06:19:52] 2026-03-27 05:18:52,463 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-7065307439/memory_monitor_summary.json (trf name=prmon)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,463 | INFO     | extracted standard info from prmon json
[2026-03-27 06:19:52] 2026-03-27 05:18:52,463 | INFO     | extracted standard memory fields from prmon json
[2026-03-27 06:19:52] 2026-03-27 05:18:52,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-27 06:19:52] 2026-03-27 05:18:52,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-27 06:19:52] 2026-03-27 05:18:52,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-27 06:19:52] 2026-03-27 05:18:52,479 | INFO     | fitting pss+swap vs Time
[2026-03-27 06:19:52] 2026-03-27 05:18:52,480 | INFO     | sum of square deviations: 32399565620.0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,487 | INFO     | sum of deviations: 173032796542.00006
[2026-03-27 06:19:52] 2026-03-27 05:18:52,487 | INFO     | mean x: 1774574332.0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,488 | INFO     | mean y: 2500655.552016985
[2026-03-27 06:19:52] 2026-03-27 05:18:52,488 | INFO     | intersect: -9474773297.406975
[2026-03-27 06:19:52] 2026-03-27 05:18:52,488 | INFO     | chi2: 7.998518980620635
[2026-03-27 06:19:52] 2026-03-27 05:18:52,489 | INFO     | sum of square deviations: 31378644152.5
[2026-03-27 06:19:52] 2026-03-27 05:18:52,496 | INFO     | sum of deviations: 202954131326.99997
[2026-03-27 06:19:52] 2026-03-27 05:18:52,496 | INFO     | mean x: 1774574179.5
[2026-03-27 06:19:52] 2026-03-27 05:18:52,496 | INFO     | mean y: 2505084.3004291845
[2026-03-27 06:19:52] 2026-03-27 05:18:52,496 | INFO     | intersect: -11475274494.87402
[2026-03-27 06:19:52] 2026-03-27 05:18:52,502 | INFO     | chi2: 7.260320235665366
[2026-03-27 06:19:52] 2026-03-27 05:18:52,502 | INFO     | current chi2=7.260320235665366 (change=9.229192888631353 %)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,503 | INFO     | right removable region: 465
[2026-03-27 06:19:52] 2026-03-27 05:18:52,503 | INFO     | sum of square deviations: 31378644152.5
[2026-03-27 06:19:52] 2026-03-27 05:18:52,510 | INFO     | sum of deviations: 1164305993.4999847
[2026-03-27 06:19:52] 2026-03-27 05:18:52,510 | INFO     | mean x: 1774574484.5
[2026-03-27 06:19:52] 2026-03-27 05:18:52,510 | INFO     | mean y: 2526321.581545064
[2026-03-27 06:19:52] 2026-03-27 05:18:52,510 | INFO     | intersect: -63319343.96646369
[2026-03-27 06:19:52] 2026-03-27 05:18:52,511 | INFO     | chi2: 3.074076212768726
[2026-03-27 06:19:52] 2026-03-27 05:18:52,511 | INFO     | current chi2=3.074076212768726 (change=61.56693232563666 %)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,516 | INFO     | sum of square deviations: 30379397510.0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,522 | INFO     | sum of deviations: -102511088161.99997
[2026-03-27 06:19:52] 2026-03-27 05:18:52,523 | INFO     | mean x: 1774574637.0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,523 | INFO     | mean y: 2542109.071583514
[2026-03-27 06:19:52] 2026-03-27 05:18:52,523 | INFO     | intersect: 5990599541.865487
[2026-03-27 06:19:52] 2026-03-27 05:18:52,524 | INFO     | chi2: 1.1054882556302785
[2026-03-27 06:19:52] 2026-03-27 05:18:52,524 | INFO     | current chi2=1.1054882556302785 (change=64.038358872222 %)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,525 | INFO     | sum of square deviations: 29401593130.0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,531 | INFO     | sum of deviations: -114168332823.5
[2026-03-27 06:19:52] 2026-03-27 05:18:52,531 | INFO     | mean x: 1774574789.5
[2026-03-27 06:19:52] 2026-03-27 05:18:52,532 | INFO     | mean y: 2543923.4451754387
[2026-03-27 06:19:52] 2026-03-27 05:18:52,532 | INFO     | intersect: 6893335326.89143
[2026-03-27 06:19:52] 2026-03-27 05:18:52,532 | INFO     | chi2: 1.067162789085503
[2026-03-27 06:19:52] 2026-03-27 05:18:52,533 | INFO     | current chi2=1.067162789085503 (change=3.466836155841809 %)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,533 | INFO     | left removable region: 30
[2026-03-27 06:19:52] 2026-03-27 05:18:52,533 | INFO     | sum of square deviations: 25523715770.0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,548 | INFO     | sum of deviations: -55078545230.99998
[2026-03-27 06:19:52] 2026-03-27 05:18:52,548 | INFO     | mean x: 1774575064.0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,548 | INFO     | mean y: 2544425.563218391
[2026-03-27 06:19:52] 2026-03-27 05:18:52,548 | INFO     | intersect: 3831963849.016103
[2026-03-27 06:19:52] 2026-03-27 05:18:52,549 | INFO     | chi2: 0.22066988502834795
[2026-03-27 06:19:52] 2026-03-27 05:18:52,549 | INFO     | current memory leak: -2.16 B/s (using 435 data points, chi2=0.22)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,550 | INFO     | could have reported an average CPU frequency of 1999 MHz (20 samples)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,550 | INFO     | ..............................
[2026-03-27 06:19:52] 2026-03-27 05:18:52,550 | INFO     | . Timing measurements:
[2026-03-27 06:19:52] 2026-03-27 05:18:52,550 | INFO     | . get job = 0 s
[2026-03-27 06:19:52] 2026-03-27 05:18:52,551 | INFO     | . initial setup = 98 s
[2026-03-27 06:19:52] 2026-03-27 05:18:52,551 | INFO     | . payload setup = 120 s
[2026-03-27 06:19:52] 2026-03-27 05:18:52,551 | INFO     | . stage-in = 0 s
[2026-03-27 06:19:52] 2026-03-27 05:18:52,551 | INFO     | . payload execution = 28838 s
[2026-03-27 06:19:52] 2026-03-27 05:18:52,551 | INFO     | . stage-out = 3 s
[2026-03-27 06:19:52] 2026-03-27 05:18:52,551 | INFO     | . log creation = 1 s
[2026-03-27 06:19:52] 2026-03-27 05:18:52,551 | INFO     | ..............................
[2026-03-27 06:19:52] 2026-03-27 05:18:52,609 | INFO     | time since job start (28980s) is within the limit (345600.0s)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,695 | INFO     | 
[2026-03-27 06:19:52] 2026-03-27 05:18:52,695 | INFO     | job summary report
[2026-03-27 06:19:52] 2026-03-27 05:18:52,695 | INFO     | --------------------------------------------------
[2026-03-27 06:19:52] 2026-03-27 05:18:52,695 | INFO     | PanDA job id: 7065307439
[2026-03-27 06:19:52] 2026-03-27 05:18:52,695 | INFO     | task id: 49182123
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | errors: (none)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | pilot state: finished 
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | transexitcode: 0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | exeerrorcode: 0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | exeerrordiag: 
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | exitcode: 0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | exitmsg: OK
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | cpuconsumptiontime: 110951 s
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | nevents: 400
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | neventsw: 0
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | pid: 12444
[2026-03-27 06:19:52] 2026-03-27 05:18:52,696 | INFO     | pgrp: 12444
[2026-03-27 06:19:52] 2026-03-27 05:18:52,697 | INFO     | corecount: 8
[2026-03-27 06:19:52] 2026-03-27 05:18:52,697 | INFO     | event service: False
[2026-03-27 06:19:52] 2026-03-27 05:18:52,697 | INFO     | sizes: {0: 2279226, 1: 2279911, 2: 2280372, 13: 2280372, 28962: 2317580, 28966: 2326578, 28967: 2326956}
[2026-03-27 06:19:52] 2026-03-27 05:18:52,697 | INFO     | --------------------------------------------------
[2026-03-27 06:19:52] 2026-03-27 05:18:52,697 | INFO     | 
[2026-03-27 06:19:52] 2026-03-27 05:18:52,697 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-03-27 06:19:52] 2026-03-27 05:18:52,874 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,874 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,875 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,875 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,875 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,875 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,876 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,876 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,876 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,876 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,876 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,876 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,876 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,876 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 06:19:52] 2026-03-27 05:18:52,877 | INFO     | job 7065307439 has completed (purged errors)
[2026-03-27 06:19:52] 2026-03-27 05:18:52,877 | INFO     | overall cleanup function is called
[2026-03-27 06:19:52] 2026-03-27 05:18:53,886 | INFO     | --- collectZombieJob: --- 10, [12444]
[2026-03-27 06:19:52] 2026-03-27 05:18:53,886 | INFO     | zombie collector waiting for pid 12444
[2026-03-27 06:19:52] 2026-03-27 05:18:53,886 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 06:19:52] 2026-03-27 05:18:53,886 | INFO     | collected zombie processes
[2026-03-27 06:19:52] 2026-03-27 05:18:53,887 | INFO     | will attempt to kill all subprocesses of pid=12444
[2026-03-27 06:19:52] 2026-03-27 05:18:53,994 | INFO     | process IDs to be killed: [12444] (in reverse order)
[2026-03-27 06:19:52] 2026-03-27 05:18:54,063 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 06:19:52] 2026-03-27 05:18:54,064 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 06:19:52] 2026-03-27 05:18:54,067 | INFO     | did not find any defunct processes belonging to 12444
[2026-03-27 06:19:52] 2026-03-27 05:18:54,070 | INFO     | did not find any defunct processes belonging to 12444
[2026-03-27 06:19:52] 2026-03-27 05:18:54,071 | INFO     | ready for new job
[2026-03-27 06:19:52] 2026-03-27 05:18:54,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 06:19:52] 2026-03-27 05:18:54,074 | INFO     | **************************************
[2026-03-27 06:19:52] 2026-03-27 05:18:54,074 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 06:19:52] 2026-03-27 05:18:54,074 | INFO     | **************************************
[2026-03-27 06:19:52] 2026-03-27 05:18:54,074 | INFO     | 
[2026-03-27 06:19:52] 2026-03-27 05:18:54,075 | INFO     | pilot is running in a VM
[2026-03-27 06:19:52] 2026-03-27 05:18:54,075 | INFO     | architecture information:
[2026-03-27 06:19:52] 2026-03-27 05:18:54,082 | INFO     | executing command: cat /etc/os-release
[2026-03-27 06:19:52] 2026-03-27 05:18:54,390 | INFO     | cat /etc/os-release:
[2026-03-27 06:19:52] NAME="CentOS Linux"
[2026-03-27 06:19:52] VERSION="7 (Core)"
[2026-03-27 06:19:52] ID="centos"
[2026-03-27 06:19:52] ID_LIKE="rhel fedora"
[2026-03-27 06:19:52] VERSION_ID="7"
[2026-03-27 06:19:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 06:19:52] ANSI_COLOR="0;31"
[2026-03-27 06:19:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 06:19:52] HOME_URL="https://www.centos.org/"
[2026-03-27 06:19:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 06:19:52] 
[2026-03-27 06:19:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 06:19:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 06:19:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 06:19:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 06:19:52] 
[2026-03-27 06:19:52] 2026-03-27 05:18:54,395 | INFO     | **************************************
[2026-03-27 06:19:52] 2026-03-27 05:18:54,899 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-03-27 06:19:52] 2026-03-27 05:18:55,114 | INFO     | sufficient remaining disk space (497244176384 B)
[2026-03-27 06:19:52] 2026-03-27 05:18:55,114 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 06:19:52] 2026-03-27 05:18:55,114 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 06:19:52] 2026-03-27 05:18:55,114 | INFO     | update_server=False
[2026-03-27 06:19:52] 2026-03-27 05:18:55,114 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 06:19:52] 2026-03-27 05:18:55,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 06:19:52] 2026-03-27 05:18:55,162 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-27 06:19:52] 2026-03-27 05:18:55,162 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-27 06:19:52] 2026-03-27 05:18:55,162 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 06:19:52] 2026-03-27 05:18:55,163 | INFO     | will abort loop
[2026-03-27 06:19:52] 2026-03-27 05:18:55,289 | INFO     | all payload control threads have been joined
[2026-03-27 06:19:52] 2026-03-27 05:18:55,940 | INFO     | all data control threads have been joined
[2026-03-27 06:19:52] 2026-03-27 05:18:56,121 | INFO     | [job] retrieve thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:56,169 | INFO     | [job] job monitor thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:56,295 | INFO     | [payload] control thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:56,343 | INFO     | [payload] validate_post thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:56,557 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:56,596 | INFO     | all job control threads have been joined
[2026-03-27 06:19:52] 2026-03-27 05:18:56,650 | INFO     | [payload] failed_post thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:56,789 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:56,901 | INFO     | [job] validate thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:56,946 | INFO     | [data] control thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:57,122 | INFO     | [data] copytool_out thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:57,162 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:57,184 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:57,281 | INFO     | [data] copytool_in thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:57,602 | INFO     | [job] control thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:18:57,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 06:19:52] 2026-03-27 05:18:58,407 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 06:19:52] 2026-03-27 05:18:58,713 | INFO     | [job] queue monitor thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:19:02,415 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 06:19:52] 2026-03-27 05:19:25,813 | INFO     | PID=7921 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-27 06:19:52] 2026-03-27 05:19:25,813 | INFO     | .. there are 9 such processes running
[2026-03-27 06:19:52] 2026-03-27 05:19:25,813 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 06:19:52] 2026-03-27 05:19:25,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 06:19:52] 2026-03-27 05:19:25,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 06:19:52] 2026-03-27 05:19:41,932 | INFO     | [monitor] cgroup control has ended
[2026-03-27 06:19:52] 2026-03-27 05:19:42,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139691138430784)>', '<ExcThread(monitor, started 139690170636032)>']
[2026-03-27 06:19:52] 2026-03-27 05:19:42,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 06:19:52] 2026-03-27 05:19:42,913 | INFO     | [monitor] control thread has ended
[2026-03-27 06:19:52] 2026-03-27 05:19:47,689 | INFO     | all workflow threads have been joined
[2026-03-27 06:19:52] 2026-03-27 05:19:47,689 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 06:19:52] 2026-03-27 05:19:47,689 | INFO     | traces error code: 0
[2026-03-27 06:19:52] 2026-03-27 05:19:47,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 06:19:52] 2026-03-27 05:19:48,129 [wrapper] ==== pilot stdout END ====
[2026-03-27 06:19:52] 2026-03-27 05:19:48,188 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 06:19:52] 2026-03-27 05:19:48,282 [wrapper] pilotpid: 7921
[2026-03-27 06:19:52] 2026-03-27 05:19:48,386 [wrapper] Pilot exit status: 0
[2026-03-27 06:19:52] 2026-03-27 05:19:48,838 [wrapper] pandaids: 7065307439
[2026-03-27 06:19:52] 2026-03-27 05:19:49,438 [wrapper] cleanup supervisor_pilot 22464 7922
[2026-03-27 06:19:52] 2026-03-27 05:19:49,525 [wrapper] Test setup, not cleaning
[2026-03-27 06:19:52] 2026-03-27 05:19:49,623 [wrapper] apfmon messages muted
[2026-03-27 06:19:52] 2026-03-27 05:19:49,723 [wrapper] ==== wrapper stdout END ====
[2026-03-27 06:19:52] 2026-03-27 05:19:49,823 [wrapper] ==== wrapper stderr END ====
[2026-03-27 06:19:52]  *** Error codes and diagnostics ***
[2026-03-27 06:19:52]     "exeErrorCode": 0,
[2026-03-27 06:19:52]     "exeErrorDiag": "",
[2026-03-27 06:19:52]     "pilotErrorCode": 0,
[2026-03-27 06:19:52]     "pilotErrorDiag": "",
[2026-03-27 06:19:52]  *** Listing of results directory ***
[2026-03-27 06:19:52] total 488224
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc    585013 Mar 25 18:42 pilot3.tar.gz
[2026-03-27 06:19:52] -rwx------. 1 boinc boinc     36322 Mar 25 18:45 runpilot2-wrapper.sh
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc      5111 Mar 25 18:47 queuedata.json
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc       100 Mar 26 22:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 06:19:52] -rwxr-xr-x. 1 boinc boinc      7986 Mar 26 22:10 run_atlas
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc       105 Mar 26 22:10 job.xml
[2026-03-27 06:19:52] -rw-r--r--. 2 boinc boinc 252438403 Mar 26 22:10 EVNT.49136347._000008.pool.root.1
[2026-03-27 06:19:52] -rw-r--r--. 2 boinc boinc    597541 Mar 26 22:10 input.tar.gz
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc      6389 Mar 26 22:10 init_data.xml
[2026-03-27 06:19:52] -rw-r--r--. 2 boinc boinc     15845 Mar 26 22:10 start_atlas.sh
[2026-03-27 06:19:52] drwxrwx--x. 2 boinc boinc        68 Mar 26 22:10 shared
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc         0 Mar 26 22:10 boinc_lockfile
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc      2625 Mar 26 22:10 pandaJob.out
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc       415 Mar 26 22:15 workernode_map.json
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc   1012352 Mar 26 22:15 agis_schedconf.cvmfs.json
[2026-03-27 06:19:52] drwx------. 5 boinc boinc      4096 Mar 26 22:15 pilot3
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc 234232110 Mar 27 06:17 HITS.49182123._000175.pool.root.1
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc       532 Mar 27 06:17 boinc_task_state.xml
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc        95 Mar 27 06:18 pilot_heartbeat.json
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc      1029 Mar 27 06:18 memory_monitor_summary.json
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc   1511579 Mar 27 06:18 agis_ddmendpoints.agis.ALL.json
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc    675369 Mar 27 06:18 log.49182123._000175.job.log.tgz.1
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc      6311 Mar 27 06:18 heartbeat.json
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc        29 Mar 27 06:19 wrapper_checkpoint.txt
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc      8192 Mar 27 06:19 boinc_mmap_file
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc      5065 Mar 27 06:19 pilotlog.txt
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc   3995087 Mar 27 06:19 log.49182123._000175.job.log.1
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc       357 Mar 27 06:19 output.list
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc       620 Mar 27 06:19 runtime_log
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc   4689920 Mar 27 06:19 result.tar.gz
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc      8816 Mar 27 06:19 runtime_log.err
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc       658 Mar 27 06:19 frZMDmTThP9n9Rq4apOajLDm4fhM0noT9bVoINGKDmpJGKDmvF0t5n.diag
[2026-03-27 06:19:52] -rw-r--r--. 1 boinc boinc     20724 Mar 27 06:19 stderr.txt
[2026-03-27 06:19:52] HITS file was successfully produced:
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc 234232110 Mar 27 06:17 shared/HITS.pool.root.1
[2026-03-27 06:19:52]  *** Contents of shared directory: ***
[2026-03-27 06:19:52] total 480448
[2026-03-27 06:19:52] -rw-r--r--. 2 boinc boinc 252438403 Mar 26 22:10 ATLAS.root_0
[2026-03-27 06:19:52] -rw-r--r--. 2 boinc boinc    597541 Mar 26 22:10 input.tar.gz
[2026-03-27 06:19:52] -rw-r--r--. 2 boinc boinc     15845 Mar 26 22:10 start_atlas.sh
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc 234232110 Mar 27 06:17 HITS.pool.root.1
[2026-03-27 06:19:52] -rw-------. 1 boinc boinc   4689920 Mar 27 06:19 result.tar.gz
06:19:54 (3797): run_atlas exited; CPU time 111384.574844
06:19:54 (3797): called boinc_finish(0)

</stderr_txt>
]]>

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