Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:08:29 (786906): wrapper (7.7.26015): starting
14:08:29 (786906): wrapper: running run_atlas (--nthreads 12)
[2026-03-27 14:08:29] Arguments: --nthreads 12
[2026-03-27 14:08:29] Threads: 12
[2026-03-27 14:08:29] Checking for CVMFS
[2026-03-27 14:08:29] No cvmfs_config command found, will try listing directly
[2026-03-27 14:08:29] CVMFS is ok
[2026-03-27 14:08:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-27 14:08:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-27 14:08:29] Further information can be found at the LHC@home message board.
[2026-03-27 14:08:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-27 14:08:29] Checking for apptainer binary...
[2026-03-27 14:08:29] which: no apptainer in ((null))
[2026-03-27 14:08:29] apptainer is not installed, using version from CVMFS
[2026-03-27 14:08:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-27 14:08:29] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot204/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-27 14:08:29] apptainer works
[2026-03-27 14:08:29] Set ATHENA_PROC_NUMBER=12
[2026-03-27 14:08:29] Set ATHENA_CORE_NUMBER=12
[2026-03-27 14:08:29] Starting ATLAS job with PandaID=7057277456
[2026-03-27 14:08:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot204/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 15:12:31]  *** The last 200 lines of the pilot log: ***
[2026-03-27 15:12:31]  lfn=log.49176578._000142.job.log.tgz.1
[2026-03-27 15:12:31]  mtime=0
[2026-03-27 15:12:31]  protocol_id=None
[2026-03-27 15:12:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-27 15:12:31]  replicas=None
[2026-03-27 15:12:31]  scope=mc23_13p6TeV
[2026-03-27 15:12:31]  status=None
[2026-03-27 15:12:31]  status_code=0
[2026-03-27 15:12:31]  storage_token=
[2026-03-27 15:12:31]  surl=/var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7057277456/log.49176578._000142.job.log.tgz.1
[2026-03-27 15:12:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/b9/log.49176578._000142.job.log.tgz.1
[2026-03-27 15:12:31]  workdir=None
[2026-03-27 15:12:31] ]
[2026-03-27 15:12:31] 2026-03-27 14:10:40,031 | INFO     | transferring file log.49176578._000142.job.log.tgz.1 from /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7057277456/log.49176578._000142.job.log.tgz.1 to /var/lib/
[2026-03-27 15:12:31] 2026-03-27 14:10:40,031 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7057277456/log.49176578._000142.job.log.tgz.1 /var/lib/boinc/var/slot204/slots/1/
[2026-03-27 15:12:31] 2026-03-27 14:10:40,047 | INFO     | adding to output.list: log.49176578._000142.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/b9/log.49176578._000142.job.log.tg
[2026-03-27 15:12:31] 2026-03-27 14:10:40,048 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-27 15:12:31] 2026-03-27 14:10:40,048 | INFO     | summary of transferred files:
[2026-03-27 15:12:31] 2026-03-27 14:10:40,048 | INFO     |  -- lfn=log.49176578._000142.job.log.tgz.1, status_code=0, status=transferred
[2026-03-27 15:12:31] 2026-03-27 14:10:40,048 | INFO     | stage-out finished correctly
[2026-03-27 15:12:31] 2026-03-27 14:10:40,177 | INFO     | PID=798635 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-27 15:12:31] 2026-03-27 14:10:40,177 | INFO     | .. there are 13 such processes running
[2026-03-27 15:12:31] 2026-03-27 14:10:40,871 | INFO     | monitor loop #277: job 0:7057277456 is in state 'finished'
[2026-03-27 15:12:31] 2026-03-27 14:10:40,872 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-27 15:12:31] 2026-03-27 14:10:41,177 | INFO     | time since job start (3720s) is within the limit (345600.0s)
[2026-03-27 15:12:31] 2026-03-27 14:10:43,183 | INFO     | time since job start (3722s) is within the limit (345600.0s)
[2026-03-27 15:12:31] 2026-03-27 14:10:43,256 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-27 15:12:31] 2026-03-27 14:10:43,375 | INFO     | monitor loop #278: job 0:7057277456 is in state 'finished'
[2026-03-27 15:12:31] 2026-03-27 14:10:43,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-27 15:12:31] 2026-03-27 14:10:44,793 | INFO     | job 7057277456 has state=finished
[2026-03-27 15:12:31] 2026-03-27 14:10:44,794 | INFO     | preparing for final server update for job 7057277456 in state='finished'
[2026-03-27 15:12:31] 2026-03-27 14:10:44,794 | INFO     | reading metadata from: /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7057277456/jobReport.json
[2026-03-27 15:12:31] 2026-03-27 14:10:44,795 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot204/slots/1/workernode_map.json
[2026-03-27 15:12:31] 2026-03-27 14:10:44,795 | INFO     | this job has now completed (state=finished)
[2026-03-27 15:12:31] 2026-03-27 14:10:44,795 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-27 15:12:31] 2026-03-27 14:10:44,795 | INFO     | log transfer has been attempted: DONE
[2026-03-27 15:12:31] 2026-03-27 14:10:44,795 | INFO     | job 7057277456 has finished - writing final server update
[2026-03-27 15:12:31] 2026-03-27 14:10:44,796 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1405651/.job.ad'
[2026-03-27 15:12:31] 2026-03-27 14:10:44,796 | INFO     | total number of processed events: 400 (read)
[2026-03-27 15:12:31] 2026-03-27 14:10:44,813 | INFO     | using path: /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7057277456/memory_monitor_summary.json (trf name=prmon)
[2026-03-27 15:12:31] 2026-03-27 14:10:44,813 | INFO     | extracted standard info from prmon json
[2026-03-27 15:12:31] 2026-03-27 14:10:44,813 | INFO     | extracted standard memory fields from prmon json
[2026-03-27 15:12:31] 2026-03-27 14:10:44,813 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-27 15:12:31] 2026-03-27 14:10:44,813 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-27 15:12:31] 2026-03-27 14:10:44,813 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-27 15:12:31] 2026-03-27 14:10:44,814 | INFO     | fitting pss+swap vs Time
[2026-03-27 15:12:31] 2026-03-27 14:10:44,814 | INFO     | sum of square deviations: 48810217.5
[2026-03-27 15:12:31] 2026-03-27 14:10:44,814 | INFO     | sum of deviations: -1508047124.0000002
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | mean x: 1774618864.5
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | mean y: 2751747.111111111
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | intersect: 54831617748.48411
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | chi2: 0.00417478332318794
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | current memory leak: -30.90 B/s (using 54 data points, chi2=0.00)
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | could have reported an average CPU frequency of 3668 MHz (6 samples)
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | ..............................
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | . Timing measurements:
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | . get job = 0 s
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | . initial setup = 4 s
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | . payload setup = 6 s
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | . stage-in = 0 s
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | . payload execution = 3697 s
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | . stage-out = 0 s
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | . log creation = 0 s
[2026-03-27 15:12:31] 2026-03-27 14:10:44,815 | INFO     | ..............................
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | 
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | job summary report
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | --------------------------------------------------
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | PanDA job id: 7057277456
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | task id: 49176578
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | errors: (none)
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | pilot state: finished 
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | transexitcode: 0
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | exeerrorcode: 0
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | exeerrordiag: 
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | exitcode: 0
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | exitmsg: OK
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | cpuconsumptiontime: 40703 s
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | nevents: 400
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | neventsw: 0
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | pid: 817338
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | pgrp: 817338
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | corecount: 12
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | event service: False
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | sizes: {0: 2280048, 1: 2280310, 11: 2280338, 3707: 2306187, 3708: 2315209, 3711: 2315265, 3713: 2315587}
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | --------------------------------------------------
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | 
[2026-03-27 15:12:31] 2026-03-27 14:10:45,056 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot204/slots/1
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,074 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,075 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-27 15:12:31] 2026-03-27 14:10:45,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,075 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 15:12:31] 2026-03-27 14:10:45,075 | INFO     | job 7057277456 has completed (purged errors)
[2026-03-27 15:12:31] 2026-03-27 14:10:45,075 | INFO     | overall cleanup function is called
[2026-03-27 15:12:31] 2026-03-27 14:10:46,082 | INFO     | --- collectZombieJob: --- 10, [817338]
[2026-03-27 15:12:31] 2026-03-27 14:10:46,082 | INFO     | zombie collector waiting for pid 817338
[2026-03-27 15:12:31] 2026-03-27 14:10:46,082 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 15:12:31] 2026-03-27 14:10:46,082 | INFO     | collected zombie processes
[2026-03-27 15:12:31] 2026-03-27 14:10:46,082 | INFO     | will attempt to kill all subprocesses of pid=817338
[2026-03-27 15:12:31] 2026-03-27 14:10:46,430 | INFO     | process IDs to be killed: [817338] (in reverse order)
[2026-03-27 15:12:31] 2026-03-27 14:10:46,585 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 15:12:31] 2026-03-27 14:10:46,585 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 15:12:31] 2026-03-27 14:10:46,606 | INFO     | did not find any defunct processes belonging to 817338
[2026-03-27 15:12:31] 2026-03-27 14:10:46,624 | INFO     | did not find any defunct processes belonging to 817338
[2026-03-27 15:12:31] 2026-03-27 14:10:46,624 | INFO     | ready for new job
[2026-03-27 15:12:31] 2026-03-27 14:10:46,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 15:12:31] 2026-03-27 14:10:46,625 | INFO     | **************************************
[2026-03-27 15:12:31] 2026-03-27 14:10:46,625 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 15:12:31] 2026-03-27 14:10:46,625 | INFO     | **************************************
[2026-03-27 15:12:31] 2026-03-27 14:10:46,625 | INFO     | 
[2026-03-27 15:12:31] 2026-03-27 14:10:46,629 | INFO     | architecture information:
[2026-03-27 15:12:31] 2026-03-27 14:10:46,629 | INFO     | executing command: cat /etc/os-release
[2026-03-27 15:12:31] 2026-03-27 14:10:46,641 | INFO     | cat /etc/os-release:
[2026-03-27 15:12:31] NAME="CentOS Linux"
[2026-03-27 15:12:31] VERSION="7 (Core)"
[2026-03-27 15:12:31] ID="centos"
[2026-03-27 15:12:31] ID_LIKE="rhel fedora"
[2026-03-27 15:12:31] VERSION_ID="7"
[2026-03-27 15:12:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 15:12:31] ANSI_COLOR="0;31"
[2026-03-27 15:12:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 15:12:31] HOME_URL="https://www.centos.org/"
[2026-03-27 15:12:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 15:12:31] 
[2026-03-27 15:12:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 15:12:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 15:12:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 15:12:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 15:12:31] 
[2026-03-27 15:12:31] 2026-03-27 14:10:46,642 | INFO     | **************************************
[2026-03-27 15:12:31] 2026-03-27 14:10:47,143 | INFO     | executing command: df -mP /var/lib/boinc/var/slot204/slots/1
[2026-03-27 15:12:31] 2026-03-27 14:10:47,159 | INFO     | sufficient remaining disk space (259174432768 B)
[2026-03-27 15:12:31] 2026-03-27 14:10:47,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 15:12:31] 2026-03-27 14:10:47,159 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 15:12:31] 2026-03-27 14:10:47,160 | INFO     | update_server=False
[2026-03-27 15:12:31] 2026-03-27 14:10:47,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 15:12:31] 2026-03-27 14:10:47,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 15:12:31] 2026-03-27 14:10:47,160 | INFO     | aborting loop
[2026-03-27 15:12:31] 2026-03-27 14:10:48,014 | INFO     | all job control threads have been joined
[2026-03-27 15:12:31] 2026-03-27 14:10:48,020 | INFO     | all data control threads have been joined
[2026-03-27 15:12:31] 2026-03-27 14:10:48,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 15:12:31] 2026-03-27 14:10:48,165 | INFO     | [job] retrieve thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:48,166 | INFO     | [job] job monitor thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:48,277 | INFO     | [payload] validate_post thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:48,504 | INFO     | all payload control threads have been joined
[2026-03-27 15:12:31] 2026-03-27 14:10:49,020 | INFO     | [job] control thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:49,022 | INFO     | [job] validate thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:49,024 | INFO     | [data] control thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:49,137 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:49,205 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:49,277 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:49,296 | INFO     | [payload] failed_post thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:49,306 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 15:12:31] 2026-03-27 14:10:49,489 | INFO     | [data] copytool_in thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:49,509 | INFO     | [payload] control thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:49,870 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 15:12:31] 2026-03-27 14:10:50,113 | INFO     | [data] copytool_out thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:50,876 | INFO     | [job] queue monitor thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:53,312 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:10:57,965 | INFO     | job.realtimelogging is not enabled
[2026-03-27 15:12:31] 2026-03-27 14:10:58,970 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 15:12:31] 2026-03-27 14:11:16,736 | INFO     | PID=798635 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-27 15:12:31] 2026-03-27 14:11:16,736 | INFO     | .. there are 13 such processes running
[2026-03-27 15:12:31] 2026-03-27 14:11:16,737 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 15:12:31] 2026-03-27 14:11:16,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 15:12:31] 2026-03-27 14:11:16,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 15:12:31] 2026-03-27 14:11:46,974 | INFO     | [monitor] cgroup control has ended
[2026-03-27 15:12:31] 2026-03-27 14:11:47,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23339701380928)>', '<ExcThread(monitor, started 23339461781248)>']
[2026-03-27 15:12:31] 2026-03-27 14:11:47,860 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 15:12:31] 2026-03-27 14:11:47,861 | INFO     | [monitor] control thread has ended
[2026-03-27 15:12:31] 2026-03-27 14:11:52,697 | INFO     | all workflow threads have been joined
[2026-03-27 15:12:31] 2026-03-27 14:11:52,698 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 15:12:31] 2026-03-27 14:11:52,698 | INFO     | traces error code: 0
[2026-03-27 15:12:31] 2026-03-27 14:11:52,698 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 15:12:31] 2026-03-27 14:11:52,865 [wrapper] ==== pilot stdout END ====
[2026-03-27 15:12:31] 2026-03-27 14:11:52,867 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 15:12:31] 2026-03-27 14:11:52,869 [wrapper] pilotpid: 798635
[2026-03-27 15:12:31] 2026-03-27 14:11:52,870 [wrapper] Pilot exit status: 0
[2026-03-27 15:12:31] 2026-03-27 14:11:52,877 [wrapper] pandaids: 7057277456
[2026-03-27 15:12:31] 2026-03-27 14:11:52,983 [wrapper] cleanup supervisor_pilot 1093818 798636
[2026-03-27 15:12:31] 2026-03-27 14:11:52,986 [wrapper] Test setup, not cleaning
[2026-03-27 15:12:31] 2026-03-27 14:11:52,988 [wrapper] apfmon messages muted
[2026-03-27 15:12:31] 2026-03-27 14:11:52,990 [wrapper] ==== wrapper stdout END ====
[2026-03-27 15:12:31] 2026-03-27 14:11:52,993 [wrapper] ==== wrapper stderr END ====
[2026-03-27 15:12:31]  *** Error codes and diagnostics ***
[2026-03-27 15:12:31]     "exeErrorCode": 0,
[2026-03-27 15:12:31]     "exeErrorDiag": "",
[2026-03-27 15:12:31]     "pilotErrorCode": 0,
[2026-03-27 15:12:31]     "pilotErrorDiag": "",
[2026-03-27 15:12:31]  *** Listing of results directory ***
[2026-03-27 15:12:31] total 481748
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc      5111 Mar 17 16:25 queuedata.json
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc    585013 Mar 17 16:25 pilot3.tar.gz
[2026-03-27 15:12:31] -rwx------. 1 boinc boinc     36322 Mar 17 16:26 runpilot2-wrapper.sh
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc       100 Mar 27 14:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 15:12:31] -rwxr-xr-x. 1 boinc boinc      7986 Mar 27 14:08 run_atlas
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc       105 Mar 27 14:08 job.xml
[2026-03-27 15:12:31] -rw-r--r--. 2 boinc boinc 244429030 Mar 27 14:08 EVNT.49134425._000006.pool.root.1
[2026-03-27 15:12:31] -rw-r--r--. 2 boinc boinc     15845 Mar 27 14:08 start_atlas.sh
[2026-03-27 15:12:31] drwxrwx--x. 2 boinc boinc      4096 Mar 27 14:08 shared
[2026-03-27 15:12:31] -rw-r--r--. 2 boinc boinc    597543 Mar 27 14:08 input.tar.gz
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc      6712 Mar 27 14:08 init_data.xml
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc         0 Mar 27 14:08 boinc_lockfile
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc      2611 Mar 27 14:08 pandaJob.out
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc   1009333 Mar 27 14:08 agis_schedconf.cvmfs.json
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc   1511579 Mar 27 14:08 agis_ddmendpoints.agis.ALL.json
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc       443 Mar 27 14:08 workernode_map.json
[2026-03-27 15:12:31] drwx------. 5 boinc boinc      4096 Mar 27 14:08 pilot3
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc 243043200 Mar 27 15:10 HITS.49176578._000142.pool.root.1
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc       529 Mar 27 15:10 boinc_task_state.xml
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc      1028 Mar 27 15:10 memory_monitor_summary.json
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc    381978 Mar 27 15:10 log.49176578._000142.job.log.tgz.1
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc      6351 Mar 27 15:10 heartbeat.json
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc        95 Mar 27 15:11 pilot_heartbeat.json
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc      4902 Mar 27 15:11 pilotlog.txt
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc    565780 Mar 27 15:11 log.49176578._000142.job.log.1
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc       357 Mar 27 15:11 output.list
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc       620 Mar 27 15:11 runtime_log
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc    962560 Mar 27 15:11 result.tar.gz
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc      9223 Mar 27 15:11 runtime_log.err
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc       663 Mar 27 15:11 pdhMDmgUlM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmgSxLDmWkJXJn.diag
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc        27 Mar 27 15:12 wrapper_checkpoint.txt
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc      8192 Mar 27 15:12 boinc_mmap_file
[2026-03-27 15:12:31] -rw-r--r--. 1 boinc boinc     21605 Mar 27 15:12 stderr.txt
[2026-03-27 15:12:31] HITS file was successfully produced:
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc 243043200 Mar 27 15:10 shared/HITS.pool.root.1
[2026-03-27 15:12:31]  *** Contents of shared directory: ***
[2026-03-27 15:12:31] total 477600
[2026-03-27 15:12:31] -rw-r--r--. 2 boinc boinc 244429030 Mar 27 14:08 ATLAS.root_0
[2026-03-27 15:12:31] -rw-r--r--. 2 boinc boinc     15845 Mar 27 14:08 start_atlas.sh
[2026-03-27 15:12:31] -rw-r--r--. 2 boinc boinc    597543 Mar 27 14:08 input.tar.gz
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc 243043200 Mar 27 15:10 HITS.pool.root.1
[2026-03-27 15:12:31] -rw-------. 1 boinc boinc    962560 Mar 27 15:11 result.tar.gz
15:12:32 (786906): run_atlas exited; CPU time 40826.428313
15:12:32 (786906): called boinc_finish(0)

</stderr_txt>
]]>

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