Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:13:23 (1524321): wrapper (7.7.26015): starting
01:13:23 (1524321): wrapper: running run_atlas (--nthreads 2)
[2026-03-27 01:13:23] Arguments: --nthreads 2
[2026-03-27 01:13:23] Threads: 2
[2026-03-27 01:13:23] Checking for CVMFS
[2026-03-27 01:13:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-27 01:13:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-27 01:13:23] Running cvmfs_config stat atlas.cern.ch
[2026-03-27 01:13:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-27 01:13:23] 2.9.2.0 1162418 6198 64008 157739 2 50 29794398 36864000 0 130560 0 1410242 99.972 216531 16001 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-27 01:13:23] CVMFS is ok
[2026-03-27 01:13:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-27 01:13:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-27 01:13:23] Further information can be found at the LHC@home message board.
[2026-03-27 01:13:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-27 01:13:23] Checking for apptainer binary...
[2026-03-27 01:13:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-27 01:13:23] Running /usr/bin/apptainer --version
[2026-03-27 01:13:23] apptainer version 1.4.1-1.1
[2026-03-27 01:13:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-27 01:13:23] thA337
[2026-03-27 01:13:23] apptainer works
[2026-03-27 01:13:23] Set ATHENA_PROC_NUMBER=2
[2026-03-27 01:13:23] Set ATHENA_CORE_NUMBER=2
[2026-03-27 01:13:23] Starting ATLAS job with PandaID=7057231679
[2026-03-27 01:13:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 06:33:42]  *** The last 200 lines of the pilot log: ***
[2026-03-27 06:33:42] 2026-03-27 05:33:10,647 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-27 06:33:42] 2026-03-27 05:33:10,647 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-27 06:33:42] 2026-03-27 05:33:10,647 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-27 06:33:42] 2026-03-27 05:33:10,647 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-27 06:33:42] 2026-03-27 05:33:10,647 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-27 06:33:42] 2026-03-27 05:33:10,647 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-27 06:33:42] 2026-03-27 05:33:10,647 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 06:33:42] 2026-03-27 05:33:10,647 | INFO     | job 7057231679 has completed (purged errors)
[2026-03-27 06:33:42] 2026-03-27 05:33:10,647 | INFO     | overall cleanup function is called
[2026-03-27 06:33:42] 2026-03-27 05:33:11,654 | INFO     | --- collectZombieJob: --- 10, [1532755]
[2026-03-27 06:33:42] 2026-03-27 05:33:11,654 | INFO     | zombie collector waiting for pid 1532755
[2026-03-27 06:33:42] 2026-03-27 05:33:11,654 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 06:33:42] 2026-03-27 05:33:11,654 | INFO     | collected zombie processes
[2026-03-27 06:33:42] 2026-03-27 05:33:11,655 | INFO     | will attempt to kill all subprocesses of pid=1532755
[2026-03-27 06:33:42] 2026-03-27 05:33:11,689 | INFO     | process IDs to be killed: [1532755] (in reverse order)
[2026-03-27 06:33:42] 2026-03-27 05:33:11,710 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 06:33:42] 2026-03-27 05:33:11,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 06:33:42] 2026-03-27 05:33:11,711 | INFO     | did not find any defunct processes belonging to 1532755
[2026-03-27 06:33:42] 2026-03-27 05:33:11,712 | INFO     | did not find any defunct processes belonging to 1532755
[2026-03-27 06:33:42] 2026-03-27 05:33:11,712 | INFO     | ready for new job
[2026-03-27 06:33:42] 2026-03-27 05:33:11,712 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 06:33:42] 2026-03-27 05:33:11,712 | INFO     | **************************************
[2026-03-27 06:33:42] 2026-03-27 05:33:11,712 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 06:33:42] 2026-03-27 05:33:11,712 | INFO     | **************************************
[2026-03-27 06:33:42] 2026-03-27 05:33:11,712 | INFO     | 
[2026-03-27 06:33:42] 2026-03-27 05:33:11,713 | INFO     | architecture information:
[2026-03-27 06:33:42] 2026-03-27 05:33:11,713 | INFO     | executing command: cat /etc/os-release
[2026-03-27 06:33:42] 2026-03-27 05:33:11,721 | INFO     | cat /etc/os-release:
[2026-03-27 06:33:42] NAME="CentOS Linux"
[2026-03-27 06:33:42] VERSION="7 (Core)"
[2026-03-27 06:33:42] ID="centos"
[2026-03-27 06:33:42] ID_LIKE="rhel fedora"
[2026-03-27 06:33:42] VERSION_ID="7"
[2026-03-27 06:33:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 06:33:42] ANSI_COLOR="0;31"
[2026-03-27 06:33:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 06:33:42] HOME_URL="https://www.centos.org/"
[2026-03-27 06:33:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 06:33:42] 
[2026-03-27 06:33:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 06:33:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 06:33:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 06:33:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 06:33:42] 
[2026-03-27 06:33:42] 2026-03-27 05:33:11,722 | INFO     | **************************************
[2026-03-27 06:33:42] 2026-03-27 05:33:12,225 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-27 06:33:42] 2026-03-27 05:33:12,237 | INFO     | sufficient remaining disk space (482233810944 B)
[2026-03-27 06:33:42] 2026-03-27 05:33:12,237 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 06:33:42] 2026-03-27 05:33:12,237 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 06:33:42] 2026-03-27 05:33:12,237 | INFO     | update_server=False
[2026-03-27 06:33:42] 2026-03-27 05:33:12,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 06:33:42] 2026-03-27 05:33:12,237 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 06:33:42] 2026-03-27 05:33:12,237 | INFO     | aborting loop
[2026-03-27 06:33:42] 2026-03-27 05:33:12,446 | INFO     | all payload control threads have been joined
[2026-03-27 06:33:42] 2026-03-27 05:33:12,690 | INFO     | all job control threads have been joined
[2026-03-27 06:33:42] 2026-03-27 05:33:12,721 | INFO     | all data control threads have been joined
[2026-03-27 06:33:42] 2026-03-27 05:33:13,117 | INFO     | [monitor] cgroup control has ended
[2026-03-27 06:33:42] 2026-03-27 05:33:13,241 | INFO     | [job] job monitor thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:13,243 | INFO     | [job] retrieve thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:13,289 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 06:33:42] 2026-03-27 05:33:13,452 | INFO     | [payload] control thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:13,696 | INFO     | [job] control thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:13,727 | INFO     | [data] control thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:13,784 | INFO     | [payload] validate_post thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:13,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 06:33:42] 2026-03-27 05:33:14,237 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:14,402 | INFO     | [job] validate thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:14,566 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:14,642 | INFO     | [data] copytool_in thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:14,682 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:14,759 | INFO     | [payload] failed_post thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:15,145 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 06:33:42] 2026-03-27 05:33:15,295 | INFO     | [data] copytool_out thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:16,151 | INFO     | [job] queue monitor thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:17,985 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:22,802 | INFO     | job.realtimelogging is not enabled
[2026-03-27 06:33:42] 2026-03-27 05:33:23,807 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 06:33:42] 2026-03-27 05:33:25,439 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140364498958144)>', '<ExcThread(monitor, started 140363993954048)>']
[2026-03-27 06:33:42] 2026-03-27 05:33:30,465 | INFO     | all workflow threads have been joined
[2026-03-27 06:33:42] 2026-03-27 05:33:30,465 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 06:33:42] 2026-03-27 05:33:30,466 | INFO     | traces error code: 0
[2026-03-27 06:33:42] 2026-03-27 05:33:30,466 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 06:33:42] 2026-03-27 05:33:41,709 | INFO     | 19172s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-27 06:33:42] 2026-03-27 05:33:42,758 | INFO     | PID=1528343 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-27 06:33:42] 2026-03-27 05:33:42,758 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 06:33:42] 2026-03-27 05:33:42,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 06:33:42] 2026-03-27 05:33:42,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 06:33:42] 2026-03-27 05:33:42,758 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 06:33:42] 2026-03-27 05:33:42,758 | INFO     | [monitor] control thread has ended
[2026-03-27 06:33:42] 2026-03-27 05:33:42,797 [wrapper] ==== pilot stdout END ====
[2026-03-27 06:33:42] 2026-03-27 05:33:42,799 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 06:33:42] 2026-03-27 05:33:42,802 [wrapper] pilotpid: 1528343
[2026-03-27 06:33:42] 2026-03-27 05:33:42,804 [wrapper] Pilot exit status: 0
[2026-03-27 06:33:42] 2026-03-27 05:33:42,810 [wrapper] pandaids: 7057231679
[2026-03-27 06:33:42] 2026-03-27 05:33:42,824 [wrapper] cleanup supervisor_pilot 1540518 1528344
[2026-03-27 06:33:42] 2026-03-27 05:33:42,826 [wrapper] Test setup, not cleaning
[2026-03-27 06:33:42] 2026-03-27 05:33:42,829 [wrapper] apfmon messages muted
[2026-03-27 06:33:42] 2026-03-27 05:33:42,831 [wrapper] ==== wrapper stdout END ====
[2026-03-27 06:33:42] 2026-03-27 05:33:42,833 [wrapper] ==== wrapper stderr END ====
[2026-03-27 06:33:42]  *** Error codes and diagnostics ***
[2026-03-27 06:33:42]     "exeErrorCode": 0,
[2026-03-27 06:33:42]     "exeErrorDiag": "",
[2026-03-27 06:33:42]     "pilotErrorCode": 0,
[2026-03-27 06:33:42]     "pilotErrorDiag": "",
[2026-03-27 06:33:42]  *** Listing of results directory ***
[2026-03-27 06:33:42] total 493020
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc    585013 Mar 17 13:21 pilot3.tar.gz
[2026-03-27 06:33:42] -rwx------ 1 boinc boinc     36322 Mar 17 13:24 runpilot2-wrapper.sh
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc      5111 Mar 17 13:26 queuedata.json
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc       100 Mar 27 01:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 06:33:42] -rwxr-xr-x 1 boinc boinc      7986 Mar 27 01:13 run_atlas
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc       105 Mar 27 01:13 job.xml
[2026-03-27 06:33:42] -rw-r--r-- 2 boinc boinc 245033786 Mar 27 01:13 EVNT.49135364._000015.pool.root.1
[2026-03-27 06:33:42] -rw-r--r-- 2 boinc boinc    597543 Mar 27 01:13 input.tar.gz
[2026-03-27 06:33:42] -rw-r--r-- 2 boinc boinc     15845 Mar 27 01:13 start_atlas.sh
[2026-03-27 06:33:42] drwxrwx--x 2 boinc boinc      4096 Mar 27 01:13 shared
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc         0 Mar 27 01:13 boinc_setup_complete
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc      6205 Mar 27 01:13 init_data.xml
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc         0 Mar 27 01:13 boinc_lockfile
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc      2605 Mar 27 01:13 pandaJob.out
[2026-03-27 06:33:42] -rw------- 1 boinc boinc   1012410 Mar 27 01:13 agis_schedconf.cvmfs.json
[2026-03-27 06:33:42] -rw------- 1 boinc boinc       417 Mar 27 01:13 workernode_map.json
[2026-03-27 06:33:42] drwx------ 5 boinc boinc      4096 Mar 27 01:13 pilot3
[2026-03-27 06:33:42] -rw------- 1 boinc boinc 249662389 Mar 27 06:32 HITS.49176822._000357.pool.root.1
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc       530 Mar 27 06:32 boinc_task_state.xml
[2026-03-27 06:33:42] -rw------- 1 boinc boinc      1017 Mar 27 06:32 memory_monitor_summary.json
[2026-03-27 06:33:42] -rw------- 1 boinc boinc        95 Mar 27 06:33 pilot_heartbeat.json
[2026-03-27 06:33:42] -rw------- 1 boinc boinc   1511579 Mar 27 06:33 agis_ddmendpoints.agis.ALL.json
[2026-03-27 06:33:42] -rw------- 1 boinc boinc    429636 Mar 27 06:33 log.49176822._000357.job.log.tgz.1
[2026-03-27 06:33:42] -rw------- 1 boinc boinc      6291 Mar 27 06:33 heartbeat.json
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc      8192 Mar 27 06:33 boinc_mmap_file
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc        28 Mar 27 06:33 wrapper_checkpoint.txt
[2026-03-27 06:33:42] -rw------- 1 boinc boinc       863 Mar 27 06:33 pilotlog.txt
[2026-03-27 06:33:42] -rw------- 1 boinc boinc   2686193 Mar 27 06:33 log.49176822._000357.job.log.1
[2026-03-27 06:33:42] -rw------- 1 boinc boinc       357 Mar 27 06:33 output.list
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc       620 Mar 27 06:33 runtime_log
[2026-03-27 06:33:42] -rw------- 1 boinc boinc   3133440 Mar 27 06:33 result.tar.gz
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc      8897 Mar 27 06:33 runtime_log.err
[2026-03-27 06:33:42] -rw------- 1 boinc boinc       661 Mar 27 06:33 T1MKDmmeiM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmdK0LDm47uMfn.diag
[2026-03-27 06:33:42] -rw-r--r-- 1 boinc boinc     11750 Mar 27 06:33 stderr.txt
[2026-03-27 06:33:42] HITS file was successfully produced:
[2026-03-27 06:33:42] -rw------- 1 boinc boinc 249662389 Mar 27 06:32 shared/HITS.pool.root.1
[2026-03-27 06:33:42]  *** Contents of shared directory: ***
[2026-03-27 06:33:42] total 486772
[2026-03-27 06:33:42] -rw-r--r-- 2 boinc boinc 245033786 Mar 27 01:13 ATLAS.root_0
[2026-03-27 06:33:42] -rw-r--r-- 2 boinc boinc    597543 Mar 27 01:13 input.tar.gz
[2026-03-27 06:33:42] -rw-r--r-- 2 boinc boinc     15845 Mar 27 01:13 start_atlas.sh
[2026-03-27 06:33:42] -rw------- 1 boinc boinc 249662389 Mar 27 06:32 HITS.pool.root.1
[2026-03-27 06:33:42] -rw------- 1 boinc boinc   3133440 Mar 27 06:33 result.tar.gz
06:34:05 (1524321): run_atlas exited; CPU time 37737.751747
06:34:05 (1524321): called boinc_finish(0)

</stderr_txt>
]]>

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