Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:26:44 (1564112): wrapper (7.7.26015): starting
13:26:44 (1564112): wrapper: running run_atlas (--nthreads 12)
[2026-03-27 13:26:44] Arguments: --nthreads 12
[2026-03-27 13:26:44] Threads: 12
[2026-03-27 13:26:44] Checking for CVMFS
[2026-03-27 13:26:44] No cvmfs_config command found, will try listing directly
[2026-03-27 13:26:44] CVMFS is ok
[2026-03-27 13:26:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-27 13:26:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-27 13:26:44] Further information can be found at the LHC@home message board.
[2026-03-27 13:26:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-27 13:26:44] Checking for apptainer binary...
[2026-03-27 13:26:44] which: no apptainer in ((null))
[2026-03-27 13:26:44] apptainer is not installed, using version from CVMFS
[2026-03-27 13:26:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-27 13:26:44] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot108/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-27 13:26:44] apptainer works
[2026-03-27 13:26:44] Set ATHENA_PROC_NUMBER=12
[2026-03-27 13:26:44] Set ATHENA_CORE_NUMBER=12
[2026-03-27 13:26:44] Starting ATLAS job with PandaID=7057157246
[2026-03-27 13:26:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot108/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 14:28:06]  *** The last 200 lines of the pilot log: ***
[2026-03-27 14:28:06] 2026-03-27 13:22:09,086 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-27 14:28:06] 2026-03-27 13:22:09,086 | INFO     | summary of transferred files:
[2026-03-27 14:28:06] 2026-03-27 13:22:09,086 | INFO     |  -- lfn=log.49191698._000007.job.log.tgz.1, status_code=0, status=transferred
[2026-03-27 14:28:06] 2026-03-27 13:22:09,086 | INFO     | stage-out finished correctly
[2026-03-27 14:28:06] 2026-03-27 13:22:09,284 | INFO     | time since job start (3315s) is within the limit (345600.0s)
[2026-03-27 14:28:06] 2026-03-27 13:22:09,384 | WARNING  | process 1600101 can no longer be monitored (due to stat problems) - aborting
[2026-03-27 14:28:06] 2026-03-27 13:22:09,384 | INFO     | using path: /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7057157246/memory_monitor_summary.json (trf name=prmon)
[2026-03-27 14:28:06] 2026-03-27 13:22:09,385 | INFO     | using path: /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7057157246/memory_monitor_summary.json (trf name=prmon)
[2026-03-27 14:28:06] 2026-03-27 13:22:09,385 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-27 14:28:06] 2026-03-27 13:22:09,385 | WARNING  | maxPSS not found in memory monitor output
[2026-03-27 14:28:06] 2026-03-27 13:22:09,385 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3953749 B
[2026-03-27 14:28:06] 2026-03-27 13:22:09,385 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15833 B
[2026-03-27 14:28:06] 2026-03-27 13:22:09,386 | INFO     | executing command: df -mP /var/lib/boinc/var/slot108/slots/1
[2026-03-27 14:28:06] 2026-03-27 13:22:09,399 | INFO     | sufficient remaining disk space (258626027520 B)
[2026-03-27 14:28:06] 2026-03-27 13:22:09,399 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-27 14:28:06] 2026-03-27 13:22:09,399 | INFO     | size of work directory /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7057157246: 4244158 B (within 5033164800 B limit)
[2026-03-27 14:28:06] 2026-03-27 13:22:09,399 | INFO     | pfn file=/var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7057157246/HITS.49191698._000007.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-27 14:28:06] 2026-03-27 13:22:09,400 | INFO     | total size of present files: 0 B (workdir size: 4244158 B)
[2026-03-27 14:28:06] 2026-03-27 13:22:09,400 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7057157246/HITS.49191698._000007.pool.root.1 since it does not exist
[2026-03-27 14:28:06] 2026-03-27 13:22:09,776 | INFO     | number of running child processes to parent process 1600101: 1
[2026-03-27 14:28:06] 2026-03-27 13:22:09,777 | INFO     | maximum number of monitored processes: 6
[2026-03-27 14:28:06] 2026-03-27 13:22:11,290 | INFO     | time since job start (3317s) is within the limit (345600.0s)
[2026-03-27 14:28:06] 2026-03-27 13:22:12,101 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-27 14:28:06] 2026-03-27 13:22:12,279 | INFO     | monitor loop #246: job 0:7057157246 is in state 'finished'
[2026-03-27 14:28:06] 2026-03-27 13:22:12,279 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-27 14:28:06] 2026-03-27 13:22:13,295 | INFO     | time since job start (3319s) is within the limit (345600.0s)
[2026-03-27 14:28:06] 2026-03-27 13:22:14,529 | INFO     | job 7057157246 has state=finished
[2026-03-27 14:28:06] 2026-03-27 13:22:14,530 | INFO     | preparing for final server update for job 7057157246 in state='finished'
[2026-03-27 14:28:06] 2026-03-27 13:22:14,530 | INFO     | reading metadata from: /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7057157246/jobReport.json
[2026-03-27 14:28:06] 2026-03-27 13:22:14,532 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot108/slots/1/workernode_map.json
[2026-03-27 14:28:06] 2026-03-27 13:22:14,532 | INFO     | this job has now completed (state=finished)
[2026-03-27 14:28:06] 2026-03-27 13:22:14,532 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-27 14:28:06] 2026-03-27 13:22:14,532 | INFO     | log transfer has been attempted: DONE
[2026-03-27 14:28:06] 2026-03-27 13:22:14,532 | INFO     | job 7057157246 has finished - writing final server update
[2026-03-27 14:28:06] 2026-03-27 13:22:14,533 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1477377/.job.ad'
[2026-03-27 14:28:06] 2026-03-27 13:22:14,533 | INFO     | total number of processed events: 400 (read)
[2026-03-27 14:28:06] 2026-03-27 13:22:14,556 | INFO     | using path: /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7057157246/memory_monitor_summary.json (trf name=prmon)
[2026-03-27 14:28:06] 2026-03-27 13:22:14,556 | INFO     | extracted standard info from prmon json
[2026-03-27 14:28:06] 2026-03-27 13:22:14,556 | INFO     | extracted standard memory fields from prmon json
[2026-03-27 14:28:06] 2026-03-27 13:22:14,557 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-27 14:28:06] 2026-03-27 13:22:14,557 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-27 14:28:06] 2026-03-27 13:22:14,557 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | fitting pss+swap vs Time
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | sum of square deviations: 32179208.0
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | sum of deviations: -152345974.99999997
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | mean x: 1774616145.0
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | mean y: 2735774.829787234
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | intersect: 8404298263.899323
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | chi2: 0.0011886130268752813
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | current memory leak: -4.73 B/s (using 47 data points, chi2=0.00)
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | could have reported an average CPU frequency of 3632 MHz (5 samples)
[2026-03-27 14:28:06] 2026-03-27 13:22:14,558 | INFO     | ..............................
[2026-03-27 14:28:06] 2026-03-27 13:22:14,559 | INFO     | . Timing measurements:
[2026-03-27 14:28:06] 2026-03-27 13:22:14,559 | INFO     | . get job = 0 s
[2026-03-27 14:28:06] 2026-03-27 13:22:14,559 | INFO     | . initial setup = 4 s
[2026-03-27 14:28:06] 2026-03-27 13:22:14,559 | INFO     | . payload setup = 6 s
[2026-03-27 14:28:06] 2026-03-27 13:22:14,559 | INFO     | . stage-in = 0 s
[2026-03-27 14:28:06] 2026-03-27 13:22:14,559 | INFO     | . payload execution = 3292 s
[2026-03-27 14:28:06] 2026-03-27 13:22:14,559 | INFO     | . stage-out = 0 s
[2026-03-27 14:28:06] 2026-03-27 13:22:14,559 | INFO     | . log creation = 0 s
[2026-03-27 14:28:06] 2026-03-27 13:22:14,559 | INFO     | ..............................
[2026-03-27 14:28:06] 2026-03-27 13:22:14,854 | INFO     | PID=1576233 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-27 14:28:06] 2026-03-27 13:22:14,854 | INFO     | .. there are 15 such processes running
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | 
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | job summary report
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | --------------------------------------------------
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | PanDA job id: 7057157246
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | task id: 49191698
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | errors: (none)
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | pilot state: finished 
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | transexitcode: 0
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | exeerrorcode: 0
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | exeerrordiag: 
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | exitcode: 0
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | exitmsg: OK
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | cpuconsumptiontime: 35524 s
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | nevents: 400
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | neventsw: 0
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | pid: 1600101
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | pgrp: 1600101
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | corecount: 12
[2026-03-27 14:28:06] 2026-03-27 13:22:15,032 | INFO     | event service: False
[2026-03-27 14:28:06] 2026-03-27 13:22:15,033 | INFO     | sizes: {0: 2280270, 11: 2280270, 3302: 2305787, 3303: 2314809, 3306: 2314893, 3308: 2315119}
[2026-03-27 14:28:06] 2026-03-27 13:22:15,033 | INFO     | --------------------------------------------------
[2026-03-27 14:28:06] 2026-03-27 13:22:15,033 | INFO     | 
[2026-03-27 14:28:06] 2026-03-27 13:22:15,033 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot108/slots/1
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,051 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,052 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-27 14:28:06] 2026-03-27 13:22:15,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,052 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 14:28:06] 2026-03-27 13:22:15,052 | INFO     | job 7057157246 has completed (purged errors)
[2026-03-27 14:28:06] 2026-03-27 13:22:15,052 | INFO     | overall cleanup function is called
[2026-03-27 14:28:06] 2026-03-27 13:22:16,059 | INFO     | --- collectZombieJob: --- 10, [1600101]
[2026-03-27 14:28:06] 2026-03-27 13:22:16,059 | INFO     | zombie collector waiting for pid 1600101
[2026-03-27 14:28:06] 2026-03-27 13:22:16,059 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 14:28:06] 2026-03-27 13:22:16,059 | INFO     | collected zombie processes
[2026-03-27 14:28:06] 2026-03-27 13:22:16,059 | INFO     | will attempt to kill all subprocesses of pid=1600101
[2026-03-27 14:28:06] 2026-03-27 13:22:16,413 | INFO     | process IDs to be killed: [1600101] (in reverse order)
[2026-03-27 14:28:06] 2026-03-27 13:22:16,568 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 14:28:06] 2026-03-27 13:22:16,569 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 14:28:06] 2026-03-27 13:22:16,595 | INFO     | did not find any defunct processes belonging to 1600101
[2026-03-27 14:28:06] 2026-03-27 13:22:16,620 | INFO     | did not find any defunct processes belonging to 1600101
[2026-03-27 14:28:06] 2026-03-27 13:22:16,621 | INFO     | ready for new job
[2026-03-27 14:28:06] 2026-03-27 13:22:16,621 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 14:28:06] 2026-03-27 13:22:16,622 | INFO     | **************************************
[2026-03-27 14:28:06] 2026-03-27 13:22:16,622 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 14:28:06] 2026-03-27 13:22:16,622 | INFO     | **************************************
[2026-03-27 14:28:06] 2026-03-27 13:22:16,622 | INFO     | 
[2026-03-27 14:28:06] 2026-03-27 13:22:16,628 | INFO     | architecture information:
[2026-03-27 14:28:06] 2026-03-27 13:22:16,628 | INFO     | executing command: cat /etc/os-release
[2026-03-27 14:28:06] 2026-03-27 13:22:16,643 | INFO     | cat /etc/os-release:
[2026-03-27 14:28:06] NAME="CentOS Linux"
[2026-03-27 14:28:06] VERSION="7 (Core)"
[2026-03-27 14:28:06] ID="centos"
[2026-03-27 14:28:06] ID_LIKE="rhel fedora"
[2026-03-27 14:28:06] VERSION_ID="7"
[2026-03-27 14:28:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 14:28:06] ANSI_COLOR="0;31"
[2026-03-27 14:28:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 14:28:06] HOME_URL="https://www.centos.org/"
[2026-03-27 14:28:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 14:28:06] 
[2026-03-27 14:28:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 14:28:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 14:28:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 14:28:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 14:28:06] 
[2026-03-27 14:28:06] 2026-03-27 13:22:16,643 | INFO     | **************************************
[2026-03-27 14:28:06] 2026-03-27 13:22:17,146 | INFO     | executing command: df -mP /var/lib/boinc/var/slot108/slots/1
[2026-03-27 14:28:06] 2026-03-27 13:22:17,160 | INFO     | sufficient remaining disk space (258617638912 B)
[2026-03-27 14:28:06] 2026-03-27 13:22:17,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 14:28:06] 2026-03-27 13:22:17,161 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 14:28:06] 2026-03-27 13:22:17,161 | INFO     | update_server=False
[2026-03-27 14:28:06] 2026-03-27 13:22:17,161 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 14:28:06] 2026-03-27 13:22:17,161 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 14:28:06] 2026-03-27 13:22:17,253 | INFO     | all data control threads have been joined
[2026-03-27 14:28:06] 2026-03-27 13:22:17,284 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-27 14:28:06] 2026-03-27 13:22:17,284 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-27 14:28:06] 2026-03-27 13:22:17,284 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 14:28:06] 2026-03-27 13:22:17,284 | INFO     | will abort loop
[2026-03-27 14:28:06] 2026-03-27 13:22:17,798 | INFO     | all job control threads have been joined
[2026-03-27 14:28:06] 2026-03-27 13:22:17,970 | INFO     | all payload control threads have been joined
[2026-03-27 14:28:06] 2026-03-27 13:22:18,155 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 14:28:06] 2026-03-27 13:22:18,166 | INFO     | [job] retrieve thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:18,197 | INFO     | [payload] failed_post thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:18,258 | INFO     | [data] control thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:18,289 | INFO     | [job] job monitor thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:18,497 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:18,803 | INFO     | [job] control thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:18,822 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:18,972 | INFO     | [payload] control thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:19,136 | INFO     | [payload] validate_post thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:19,166 | INFO     | [data] copytool_out thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:19,248 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:19,251 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:19,267 | INFO     | [job] validate thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:19,492 | INFO     | [data] copytool_in thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:19,615 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 14:28:06] 2026-03-27 13:22:20,620 | INFO     | [job] queue monitor thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:22,162 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 14:28:06] 2026-03-27 13:22:47,466 | INFO     | PID=1576233 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-27 14:28:06] 2026-03-27 13:22:47,469 | INFO     | .. there are 15 such processes running
[2026-03-27 14:28:06] 2026-03-27 13:22:47,469 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 14:28:06] 2026-03-27 13:22:47,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 14:28:06] 2026-03-27 13:22:47,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 14:28:06] 2026-03-27 13:22:59,720 | INFO     | [monitor] cgroup control has ended
[2026-03-27 14:28:06] 2026-03-27 13:23:00,721 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23163801499456)>', '<ExcThread(monitor, started 23163484215040)>']
[2026-03-27 14:28:06] 2026-03-27 13:23:01,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 14:28:06] 2026-03-27 13:23:01,537 | INFO     | [monitor] control thread has ended
[2026-03-27 14:28:06] 2026-03-27 13:23:05,746 | INFO     | all workflow threads have been joined
[2026-03-27 14:28:06] 2026-03-27 13:23:05,746 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 14:28:06] 2026-03-27 13:23:05,746 | INFO     | traces error code: 0
[2026-03-27 14:28:06] 2026-03-27 13:23:05,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 14:28:06] 2026-03-27 13:23:05,894 [wrapper] ==== pilot stdout END ====
[2026-03-27 14:28:06] 2026-03-27 13:23:05,897 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 14:28:06] 2026-03-27 13:23:05,900 [wrapper] pilotpid: 1576233
[2026-03-27 14:28:06] 2026-03-27 13:23:05,902 [wrapper] Pilot exit status: 0
[2026-03-27 14:28:06] 2026-03-27 13:23:05,913 [wrapper] pandaids: 7057157246
[2026-03-27 14:28:06] 2026-03-27 13:23:06,024 [wrapper] cleanup supervisor_pilot 1819473 1576234
[2026-03-27 14:28:06] 2026-03-27 13:23:06,027 [wrapper] Test setup, not cleaning
[2026-03-27 14:28:06] 2026-03-27 13:23:06,029 [wrapper] apfmon messages muted
[2026-03-27 14:28:06] 2026-03-27 13:23:06,031 [wrapper] ==== wrapper stdout END ====
[2026-03-27 14:28:06] 2026-03-27 13:23:06,033 [wrapper] ==== wrapper stderr END ====
[2026-03-27 14:28:06]  *** Error codes and diagnostics ***
[2026-03-27 14:28:06]     "exeErrorCode": 0,
[2026-03-27 14:28:06]     "exeErrorDiag": "",
[2026-03-27 14:28:06]     "pilotErrorCode": 0,
[2026-03-27 14:28:06]     "pilotErrorDiag": "",
[2026-03-27 14:28:06]  *** Listing of results directory ***
[2026-03-27 14:28:06] total 474604
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc    585013 Mar 17 10:43 pilot3.tar.gz
[2026-03-27 14:28:06] -rwx------. 1 boinc boinc     36322 Mar 17 10:45 runpilot2-wrapper.sh
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc      5111 Mar 17 10:45 queuedata.json
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc       100 Mar 27 13:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 14:28:06] -rwxr-xr-x. 1 boinc boinc      7986 Mar 27 13:26 run_atlas
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc       105 Mar 27 13:26 job.xml
[2026-03-27 14:28:06] -rw-r--r--. 2 boinc boinc 254241568 Mar 27 13:26 EVNT.49128105._000001.pool.root.1
[2026-03-27 14:28:06] -rw-r--r--. 2 boinc boinc     15845 Mar 27 13:26 start_atlas.sh
[2026-03-27 14:28:06] drwxrwx--x. 2 boinc boinc      4096 Mar 27 13:26 shared
[2026-03-27 14:28:06] -rw-r--r--. 2 boinc boinc    597528 Mar 27 13:26 input.tar.gz
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc      6712 Mar 27 13:26 init_data.xml
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc         0 Mar 27 13:26 boinc_lockfile
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc      2584 Mar 27 13:26 pandaJob.out
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc   1009333 Mar 27 13:26 agis_schedconf.cvmfs.json
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc   1511579 Mar 27 13:26 agis_ddmendpoints.agis.ALL.json
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc       445 Mar 27 13:26 workernode_map.json
[2026-03-27 14:28:06] drwx------. 5 boinc boinc      4096 Mar 27 13:26 pilot3
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc 226067992 Mar 27 14:21 HITS.49191698._000007.pool.root.1
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc        95 Mar 27 14:21 pilot_heartbeat.json
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc       529 Mar 27 14:21 boinc_task_state.xml
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc      1030 Mar 27 14:22 memory_monitor_summary.json
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc    359899 Mar 27 14:22 log.49191698._000007.job.log.tgz.1
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc      6344 Mar 27 14:22 heartbeat.json
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc      5017 Mar 27 14:23 pilotlog.txt
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc    509130 Mar 27 14:23 log.49191698._000007.job.log.1
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc       357 Mar 27 14:23 output.list
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc       620 Mar 27 14:23 runtime_log
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc    890880 Mar 27 14:23 result.tar.gz
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc      9223 Mar 27 14:23 runtime_log.err
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc       663 Mar 27 14:23 lOGNDmDAgM9n9Rq4apOajLDm4fhM0noT9bVooX4SDm53wLDmtjKCBo.diag
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc        27 Mar 27 14:27 wrapper_checkpoint.txt
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc      8192 Mar 27 14:28 boinc_mmap_file
[2026-03-27 14:28:06] -rw-r--r--. 1 boinc boinc     22493 Mar 27 14:28 stderr.txt
[2026-03-27 14:28:06] HITS file was successfully produced:
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc 226067992 Mar 27 14:21 shared/HITS.pool.root.1
[2026-03-27 14:28:06]  *** Contents of shared directory: ***
[2026-03-27 14:28:06] total 470536
[2026-03-27 14:28:06] -rw-r--r--. 2 boinc boinc 254241568 Mar 27 13:26 ATLAS.root_0
[2026-03-27 14:28:06] -rw-r--r--. 2 boinc boinc     15845 Mar 27 13:26 start_atlas.sh
[2026-03-27 14:28:06] -rw-r--r--. 2 boinc boinc    597528 Mar 27 13:26 input.tar.gz
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc 226067992 Mar 27 14:21 HITS.pool.root.1
[2026-03-27 14:28:06] -rw-------. 1 boinc boinc    890880 Mar 27 14:23 result.tar.gz
14:28:07 (1564112): run_atlas exited; CPU time 35631.128403
14:28:07 (1564112): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN