Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:00:18 (30079): wrapper (7.7.26015): starting
10:00:18 (30079): wrapper: running run_atlas (--nthreads 4)
[2026-03-27 10:00:18] Arguments: --nthreads 4
[2026-03-27 10:00:18] Threads: 4
[2026-03-27 10:00:18] Checking for CVMFS
[2026-03-27 10:00:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-27 10:00:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-27 10:00:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-27 10:00:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-27 10:00:19] 2.9.2.0 3058 196 55480 157751 0 49 36379144 36864000 0 130560 0 109629 99.996 5380 4259 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-27 10:00:19] CVMFS is ok
[2026-03-27 10:00:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-27 10:00:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-27 10:00:19] Further information can be found at the LHC@home message board.
[2026-03-27 10:00:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-27 10:00:19] Checking for apptainer binary...
[2026-03-27 10:00:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-27 10:00:19] Running /usr/bin/apptainer --version
[2026-03-27 10:00:19] apptainer version 1.4.1-1.1
[2026-03-27 10:00:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-27 10:00:19] thA373a
[2026-03-27 10:00:19] apptainer works
[2026-03-27 10:00:19] Set ATHENA_PROC_NUMBER=4
[2026-03-27 10:00:19] Set ATHENA_CORE_NUMBER=4
[2026-03-27 10:00:19] Starting ATLAS job with PandaID=7057151096
[2026-03-27 10:00:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 12:39:50]  *** The last 200 lines of the pilot log: ***
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | job 7057151096 has completed (purged errors)
[2026-03-27 12:39:50] 2026-03-27 11:39:11,485 | INFO     | overall cleanup function is called
[2026-03-27 12:39:50] 2026-03-27 11:39:12,492 | INFO     | --- collectZombieJob: --- 10, [38705]
[2026-03-27 12:39:50] 2026-03-27 11:39:12,493 | INFO     | zombie collector waiting for pid 38705
[2026-03-27 12:39:50] 2026-03-27 11:39:12,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 12:39:50] 2026-03-27 11:39:12,493 | INFO     | collected zombie processes
[2026-03-27 12:39:50] 2026-03-27 11:39:12,493 | INFO     | will attempt to kill all subprocesses of pid=38705
[2026-03-27 12:39:50] 2026-03-27 11:39:12,539 | INFO     | process IDs to be killed: [38705] (in reverse order)
[2026-03-27 12:39:50] 2026-03-27 11:39:12,573 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 12:39:50] 2026-03-27 11:39:12,573 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 12:39:50] 2026-03-27 11:39:12,575 | INFO     | did not find any defunct processes belonging to 38705
[2026-03-27 12:39:50] 2026-03-27 11:39:12,576 | INFO     | did not find any defunct processes belonging to 38705
[2026-03-27 12:39:50] 2026-03-27 11:39:12,576 | INFO     | ready for new job
[2026-03-27 12:39:50] 2026-03-27 11:39:12,577 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 12:39:50] 2026-03-27 11:39:12,577 | INFO     | **************************************
[2026-03-27 12:39:50] 2026-03-27 11:39:12,577 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 12:39:50] 2026-03-27 11:39:12,577 | INFO     | **************************************
[2026-03-27 12:39:50] 2026-03-27 11:39:12,577 | INFO     | 
[2026-03-27 12:39:50] 2026-03-27 11:39:12,578 | INFO     | architecture information:
[2026-03-27 12:39:50] 2026-03-27 11:39:12,578 | INFO     | executing command: cat /etc/os-release
[2026-03-27 12:39:50] 2026-03-27 11:39:12,592 | INFO     | cat /etc/os-release:
[2026-03-27 12:39:50] NAME="CentOS Linux"
[2026-03-27 12:39:50] VERSION="7 (Core)"
[2026-03-27 12:39:50] ID="centos"
[2026-03-27 12:39:50] ID_LIKE="rhel fedora"
[2026-03-27 12:39:50] VERSION_ID="7"
[2026-03-27 12:39:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 12:39:50] ANSI_COLOR="0;31"
[2026-03-27 12:39:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 12:39:50] HOME_URL="https://www.centos.org/"
[2026-03-27 12:39:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 12:39:50] 
[2026-03-27 12:39:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 12:39:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 12:39:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 12:39:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 12:39:50] 
[2026-03-27 12:39:50] 2026-03-27 11:39:12,592 | INFO     | **************************************
[2026-03-27 12:39:50] 2026-03-27 11:39:13,095 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-27 12:39:50] 2026-03-27 11:39:13,113 | INFO     | sufficient remaining disk space (323978526720 B)
[2026-03-27 12:39:50] 2026-03-27 11:39:13,113 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 12:39:50] 2026-03-27 11:39:13,113 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 12:39:50] 2026-03-27 11:39:13,113 | INFO     | update_server=False
[2026-03-27 12:39:50] 2026-03-27 11:39:13,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 12:39:50] 2026-03-27 11:39:13,113 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 12:39:50] 2026-03-27 11:39:13,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 12:39:50] 2026-03-27 11:39:13,113 | INFO     | aborting loop
[2026-03-27 12:39:50] 2026-03-27 11:39:13,574 | INFO     | all data control threads have been joined
[2026-03-27 12:39:50] 2026-03-27 11:39:14,119 | INFO     | [job] retrieve thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:14,119 | INFO     | [job] queue monitor thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:14,119 | INFO     | [job] job monitor thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:14,175 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:14,185 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:14,186 | INFO     | all job control threads have been joined
[2026-03-27 12:39:50] 2026-03-27 11:39:14,189 | INFO     | [job] validate thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:14,223 | INFO     | all payload control threads have been joined
[2026-03-27 12:39:50] 2026-03-27 11:39:14,298 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:14,351 | INFO     | [data] copytool_in thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:14,570 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 12:39:50] 2026-03-27 11:39:14,579 | INFO     | [data] control thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:14,724 | INFO     | [payload] validate_post thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:15,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 12:39:50] 2026-03-27 11:39:15,192 | INFO     | [job] control thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:15,229 | INFO     | [payload] control thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:15,528 | INFO     | [payload] failed_post thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:15,556 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:16,576 | INFO     | [data] copytool_out thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:19,022 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 12:39:50] 2026-03-27 11:39:43,612 | INFO     | [monitor] cgroup control has ended
[2026-03-27 12:39:50] 2026-03-27 11:39:43,671 | INFO     | PID=34207 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-27 12:39:50] 2026-03-27 11:39:43,671 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 12:39:50] 2026-03-27 11:39:43,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 12:39:50] 2026-03-27 11:39:43,671 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 12:39:50] 2026-03-27 11:39:45,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139848283100992)>', '<ExcThread(monitor, started 139847910004480)>']
[2026-03-27 12:39:50] 2026-03-27 11:39:45,682 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 12:39:50] 2026-03-27 11:39:45,682 | INFO     | [monitor] control thread has ended
[2026-03-27 12:39:50] 2026-03-27 11:39:50,178 | INFO     | all workflow threads have been joined
[2026-03-27 12:39:50] 2026-03-27 11:39:50,178 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 12:39:50] 2026-03-27 11:39:50,178 | INFO     | traces error code: 0
[2026-03-27 12:39:50] 2026-03-27 11:39:50,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 12:39:50] 2026-03-27 11:39:50,255 [wrapper] ==== pilot stdout END ====
[2026-03-27 12:39:50] 2026-03-27 11:39:50,259 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 12:39:50] 2026-03-27 11:39:50,262 [wrapper] pilotpid: 34207
[2026-03-27 12:39:50] 2026-03-27 11:39:50,266 [wrapper] Pilot exit status: 0
[2026-03-27 12:39:50] 2026-03-27 11:39:50,277 [wrapper] pandaids: 7057151096
[2026-03-27 12:39:50] 2026-03-27 11:39:50,299 [wrapper] cleanup supervisor_pilot   45971 34208
[2026-03-27 12:39:50] 2026-03-27 11:39:50,304 [wrapper] Test setup, not cleaning
[2026-03-27 12:39:50] 2026-03-27 11:39:50,308 [wrapper] apfmon messages muted
[2026-03-27 12:39:50] 2026-03-27 11:39:50,311 [wrapper] ==== wrapper stdout END ====
[2026-03-27 12:39:50] 2026-03-27 11:39:50,315 [wrapper] ==== wrapper stderr END ====
[2026-03-27 12:39:50]  *** Error codes and diagnostics ***
[2026-03-27 12:39:50]     "exeErrorCode": 0,
[2026-03-27 12:39:50]     "exeErrorDiag": "",
[2026-03-27 12:39:50]     "pilotErrorCode": 0,
[2026-03-27 12:39:50]     "pilotErrorDiag": "",
[2026-03-27 12:39:50]  *** Listing of results directory ***
[2026-03-27 12:39:50] total 447996
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc      5111 Mar 17 10:43 queuedata.json
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc    585013 Mar 17 10:43 pilot3.tar.gz
[2026-03-27 12:39:50] -rwx------ 1 boinc boinc     36322 Mar 17 10:43 runpilot2-wrapper.sh
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc       100 Mar 27 10:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 12:39:50] -rwxr-xr-x 1 boinc boinc      7986 Mar 27 10:00 run_atlas
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc       105 Mar 27 10:00 job.xml
[2026-03-27 12:39:50] -rw-r--r-- 2 boinc boinc 237649834 Mar 27 10:00 EVNT.49135257._000004.pool.root.1
[2026-03-27 12:39:50] drwxrwx--x 2 boinc boinc      4096 Mar 27 10:00 shared
[2026-03-27 12:39:50] -rw-r--r-- 2 boinc boinc    597538 Mar 27 10:00 input.tar.gz
[2026-03-27 12:39:50] -rw-r--r-- 2 boinc boinc     15845 Mar 27 10:00 start_atlas.sh
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc         0 Mar 27 10:00 boinc_setup_complete
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc      6377 Mar 27 10:00 init_data.xml
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc         0 Mar 27 10:00 boinc_lockfile
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc      2618 Mar 27 10:00 pandaJob.out
[2026-03-27 12:39:50] -rw------- 1 boinc boinc   1010117 Mar 27 10:00 agis_schedconf.cvmfs.json
[2026-03-27 12:39:50] -rw------- 1 boinc boinc   1511579 Mar 27 10:00 agis_ddmendpoints.agis.ALL.json
[2026-03-27 12:39:50] -rw------- 1 boinc boinc       422 Mar 27 10:00 workernode_map.json
[2026-03-27 12:39:50] drwx------ 5 boinc boinc      4096 Mar 27 10:00 pilot3
[2026-03-27 12:39:50] -rw------- 1 boinc boinc 213785253 Mar 27 12:38 HITS.49176793._000094.pool.root.1
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc       529 Mar 27 12:38 boinc_task_state.xml
[2026-03-27 12:39:50] -rw------- 1 boinc boinc      1023 Mar 27 12:39 memory_monitor_summary.json
[2026-03-27 12:39:50] -rw------- 1 boinc boinc    341869 Mar 27 12:39 log.49176793._000094.job.log.tgz.1
[2026-03-27 12:39:50] -rw------- 1 boinc boinc      6301 Mar 27 12:39 heartbeat.json
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc        27 Mar 27 12:39 wrapper_checkpoint.txt
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc      8192 Mar 27 12:39 boinc_mmap_file
[2026-03-27 12:39:50] -rw------- 1 boinc boinc        95 Mar 27 12:39 pilot_heartbeat.json
[2026-03-27 12:39:50] -rw------- 1 boinc boinc      4746 Mar 27 12:39 pilotlog.txt
[2026-03-27 12:39:50] -rw------- 1 boinc boinc   1350443 Mar 27 12:39 log.49176793._000094.job.log.1
[2026-03-27 12:39:50] -rw------- 1 boinc boinc       357 Mar 27 12:39 output.list
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc       620 Mar 27 12:39 runtime_log
[2026-03-27 12:39:50] -rw------- 1 boinc boinc   1710080 Mar 27 12:39 result.tar.gz
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc      8901 Mar 27 12:39 runtime_log.err
[2026-03-27 12:39:50] -rw------- 1 boinc boinc       659 Mar 27 12:39 eY1LDm48fM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmDxzLDmgVnYSo.diag
[2026-03-27 12:39:50] -rw-r--r-- 1 boinc boinc     12217 Mar 27 12:39 stderr.txt
[2026-03-27 12:39:50] HITS file was successfully produced:
[2026-03-27 12:39:50] -rw------- 1 boinc boinc 213785253 Mar 27 12:38 shared/HITS.pool.root.1
[2026-03-27 12:39:50]  *** Contents of shared directory: ***
[2026-03-27 12:39:50] total 443136
[2026-03-27 12:39:50] -rw-r--r-- 2 boinc boinc 237649834 Mar 27 10:00 ATLAS.root_0
[2026-03-27 12:39:50] -rw-r--r-- 2 boinc boinc    597538 Mar 27 10:00 input.tar.gz
[2026-03-27 12:39:50] -rw-r--r-- 2 boinc boinc     15845 Mar 27 10:00 start_atlas.sh
[2026-03-27 12:39:50] -rw------- 1 boinc boinc 213785253 Mar 27 12:38 HITS.pool.root.1
[2026-03-27 12:39:50] -rw------- 1 boinc boinc   1710080 Mar 27 12:39 result.tar.gz
12:39:52 (30079): run_atlas exited; CPU time 36482.396921
12:39:52 (30079): called boinc_finish(0)

</stderr_txt>
]]>

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