Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:45:11 (3865): wrapper (7.7.26015): starting
14:45:11 (3865): wrapper: running run_atlas (--nthreads 8)
[2026-03-25 14:45:11] Arguments: --nthreads 8
[2026-03-25 14:45:11] Threads: 8
[2026-03-25 14:45:11] Checking for CVMFS
[2026-03-25 14:45:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 14:45:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 14:45:11] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 14:45:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 14:45:12] 2.11.0.0 7441 159954 90856 157685 3 188 2627757 4096001 1834 130560 1 13248670 99.655 9838290 361 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-25 14:45:12] CVMFS is ok
[2026-03-25 14:45:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 14:45:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 14:45:12] Further information can be found at the LHC@home message board.
[2026-03-25 14:45:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 14:45:12] Checking for apptainer binary...
[2026-03-25 14:45:12] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-25 14:45:12] apptainer is not installed, using version from CVMFS
[2026-03-25 14:45:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 14:45:12] WARNING: Environment variable TMPDIR already has value [/tmp/job_11393546/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node025
[2026-03-25 14:45:12] apptainer works
[2026-03-25 14:45:12] Set ATHENA_PROC_NUMBER=8
[2026-03-25 14:45:12] Set ATHENA_CORE_NUMBER=8
[2026-03-25 14:45:12] Starting ATLAS job with PandaID=7057073528
[2026-03-25 14:45:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11393546/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 16:46:37]  *** The last 200 lines of the pilot log: ***
[2026-03-25 16:46:37] 2026-03-25 15:45:33,530 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-25 16:46:37] 2026-03-25 15:45:34,478 | INFO     | job 7057073528 has state=finished
[2026-03-25 16:46:37] 2026-03-25 15:45:34,478 | INFO     | preparing for final server update for job 7057073528 in state='finished'
[2026-03-25 16:46:37] 2026-03-25 15:45:34,478 | INFO     | reading metadata from: /tmp/job_11393546/atlas/pilot/slots/0/PanDA_Pilot-7057073528/jobReport.json
[2026-03-25 16:46:37] 2026-03-25 15:45:34,480 | INFO     | added worker_node to metadata from /tmp/job_11393546/atlas/pilot/slots/0/workernode_map.json
[2026-03-25 16:46:37] 2026-03-25 15:45:34,480 | INFO     | this job has now completed (state=finished)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,480 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,480 | INFO     | log transfer has been attempted: DONE
[2026-03-25 16:46:37] 2026-03-25 15:45:34,480 | INFO     | job 7057073528 has finished - writing final server update
[2026-03-25 16:46:37] 2026-03-25 15:45:34,480 | INFO     | total number of processed events: 400 (read)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,498 | INFO     | using path: /tmp/job_11393546/atlas/pilot/slots/0/PanDA_Pilot-7057073528/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,498 | INFO     | extracted standard info from prmon json
[2026-03-25 16:46:37] 2026-03-25 15:45:34,498 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 16:46:37] 2026-03-25 15:45:34,498 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 16:46:37] 2026-03-25 15:45:34,498 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 16:46:37] 2026-03-25 15:45:34,498 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 16:46:37] 2026-03-25 15:45:34,500 | INFO     | fitting pss+swap vs Time
[2026-03-25 16:46:37] 2026-03-25 15:45:34,500 | INFO     | sum of square deviations: 509440249.5
[2026-03-25 16:46:37] 2026-03-25 15:45:34,500 | INFO     | sum of deviations: 8611603599.5
[2026-03-25 16:46:37] 2026-03-25 15:45:34,500 | INFO     | mean x: 1774449904.5
[2026-03-25 16:46:37] 2026-03-25 15:45:34,500 | INFO     | mean y: 2534722.9915254237
[2026-03-25 16:46:37] 2026-03-25 15:45:34,500 | INFO     | intersect: -29992855707.431526
[2026-03-25 16:46:37] 2026-03-25 15:45:34,500 | INFO     | chi2: 1.1822993179363859
[2026-03-25 16:46:37] 2026-03-25 15:45:34,500 | INFO     | sum of square deviations: 447383272.0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | sum of deviations: 8163675628.0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | mean x: 1774449752.0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | mean y: 2533621.5840707966
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | intersect: -32376934052.19396
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | chi2: 1.1839888645981744
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | current chi2=1.1839888645981744 (change=-0.142903462444479 %)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | right removable region: 112
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | sum of square deviations: 447383272.0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | sum of deviations: -5701426366.0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | mean x: 1774450057.0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,501 | INFO     | mean y: 2569174.5132743362
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | intersect: 22616057369.775978
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | chi2: 0.031009358368485198
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | current chi2=0.031009358368485198 (change=97.37719899706873 %)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | sum of square deviations: 390582207.0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | sum of deviations: -5077057968.499998
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | mean x: 1774450209.5
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | mean y: 2567475.8981481483
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | intersect: 23068099940.997013
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | chi2: 0.030688904600601728
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | current chi2=0.030688904600601728 (change=1.0334098631629458 %)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | left removable region: 20
[2026-03-25 16:46:37] 2026-03-25 15:45:34,502 | INFO     | sum of square deviations: 241429643.0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | sum of deviations: -1991706059.0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | mean x: 1774450331.5
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | mean y: 2557694.5217391304
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | intersect: 14641122506.727127
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | chi2: 0.023357361464937863
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | current memory leak: -8.25 B/s (using 92 data points, chi2=0.02)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | could have reported an average CPU frequency of 2707 MHz (7 samples)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | ..............................
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | . Timing measurements:
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | . get job = 0 s
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | . initial setup = 2 s
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | . payload setup = 3 s
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | . stage-in = 0 s
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | . payload execution = 7193 s
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | . stage-out = 0 s
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | . log creation = 0 s
[2026-03-25 16:46:37] 2026-03-25 15:45:34,503 | INFO     | ..............................
[2026-03-25 16:46:37] 2026-03-25 15:45:34,510 | INFO     | time since job start (7215s) is within the limit (345600.0s)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | 
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | job summary report
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | --------------------------------------------------
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | PanDA job id: 7057073528
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | task id: 49176275
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | errors: (none)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | pilot state: finished 
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | transexitcode: 0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | exeerrorcode: 0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | exeerrordiag: 
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | exitcode: 0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | exitmsg: OK
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | cpuconsumptiontime: 52804 s
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | nevents: 400
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | neventsw: 0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | pid: 14888
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | pgrp: 14888
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | corecount: 8
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | event service: False
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | sizes: {0: 2280424, 11: 2280424, 7200: 2307912, 7201: 2316995, 7203: 2316995, 7204: 2317189}
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | --------------------------------------------------
[2026-03-25 16:46:37] 2026-03-25 15:45:34,850 | INFO     | 
[2026-03-25 16:46:37] 2026-03-25 15:45:34,851 | INFO     | executing command: ls -lF /tmp/job_11393546/atlas/pilot/slots/0
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,860 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,861 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,861 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,861 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 16:46:37] 2026-03-25 15:45:34,861 | INFO     | job 7057073528 has completed (purged errors)
[2026-03-25 16:46:37] 2026-03-25 15:45:34,861 | INFO     | overall cleanup function is called
[2026-03-25 16:46:37] 2026-03-25 15:45:35,867 | INFO     | --- collectZombieJob: --- 10, [14888]
[2026-03-25 16:46:37] 2026-03-25 15:45:35,867 | INFO     | zombie collector waiting for pid 14888
[2026-03-25 16:46:37] 2026-03-25 15:45:35,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 16:46:37] 2026-03-25 15:45:35,867 | INFO     | collected zombie processes
[2026-03-25 16:46:37] 2026-03-25 15:45:35,867 | INFO     | will attempt to kill all subprocesses of pid=14888
[2026-03-25 16:46:37] 2026-03-25 15:45:35,971 | INFO     | process IDs to be killed: [14888] (in reverse order)
[2026-03-25 16:46:37] 2026-03-25 15:45:36,009 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 16:46:37] 2026-03-25 15:45:36,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 16:46:37] 2026-03-25 15:45:36,014 | INFO     | did not find any defunct processes belonging to 14888
[2026-03-25 16:46:37] 2026-03-25 15:45:36,017 | INFO     | did not find any defunct processes belonging to 14888
[2026-03-25 16:46:37] 2026-03-25 15:45:36,017 | INFO     | ready for new job
[2026-03-25 16:46:37] 2026-03-25 15:45:36,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 16:46:37] 2026-03-25 15:45:36,018 | INFO     | **************************************
[2026-03-25 16:46:37] 2026-03-25 15:45:36,018 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 16:46:37] 2026-03-25 15:45:36,018 | INFO     | **************************************
[2026-03-25 16:46:37] 2026-03-25 15:45:36,018 | INFO     | 
[2026-03-25 16:46:37] 2026-03-25 15:45:36,032 | INFO     | architecture information:
[2026-03-25 16:46:37] 2026-03-25 15:45:36,033 | INFO     | executing command: cat /etc/os-release
[2026-03-25 16:46:37] 2026-03-25 15:45:36,039 | INFO     | cat /etc/os-release:
[2026-03-25 16:46:37] NAME="CentOS Linux"
[2026-03-25 16:46:37] VERSION="7 (Core)"
[2026-03-25 16:46:37] ID="centos"
[2026-03-25 16:46:37] ID_LIKE="rhel fedora"
[2026-03-25 16:46:37] VERSION_ID="7"
[2026-03-25 16:46:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 16:46:37] ANSI_COLOR="0;31"
[2026-03-25 16:46:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 16:46:37] HOME_URL="https://www.centos.org/"
[2026-03-25 16:46:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 16:46:37] 
[2026-03-25 16:46:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 16:46:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 16:46:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 16:46:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 16:46:37] 
[2026-03-25 16:46:37] 2026-03-25 15:45:36,039 | INFO     | **************************************
[2026-03-25 16:46:37] 2026-03-25 15:45:36,542 | INFO     | executing command: df -mP /tmp/job_11393546/atlas/pilot/slots/0
[2026-03-25 16:46:37] 2026-03-25 15:45:36,548 | INFO     | sufficient remaining disk space (209989926912 B)
[2026-03-25 16:46:37] 2026-03-25 15:45:36,548 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 16:46:37] 2026-03-25 15:45:36,548 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 16:46:37] 2026-03-25 15:45:36,548 | INFO     | update_server=False
[2026-03-25 16:46:37] 2026-03-25 15:45:36,548 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 16:46:37] 2026-03-25 15:45:36,548 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 16:46:37] 2026-03-25 15:45:36,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 16:46:37] 2026-03-25 15:45:36,548 | INFO     | aborting loop
[2026-03-25 16:46:37] 2026-03-25 15:45:36,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 16:46:37] 2026-03-25 15:45:37,057 | INFO     | all job control threads have been joined
[2026-03-25 16:46:37] 2026-03-25 15:45:37,257 | INFO     | all data control threads have been joined
[2026-03-25 16:46:37] 2026-03-25 15:45:37,479 | INFO     | all payload control threads have been joined
[2026-03-25 16:46:37] 2026-03-25 15:45:37,553 | INFO     | [job] job monitor thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:37,553 | INFO     | [job] retrieve thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:37,553 | INFO     | [job] queue monitor thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:37,626 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:37,805 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:37,943 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:38,062 | INFO     | [data] copytool_in thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:38,062 | INFO     | [job] control thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:38,262 | INFO     | [data] control thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:38,345 | INFO     | [payload] validate_post thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:38,484 | INFO     | [payload] control thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:38,801 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:38,871 | INFO     | [job] validate thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:38,899 | INFO     | [data] copytool_out thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:38,934 | INFO     | [payload] failed_post thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:45:39,582 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 16:46:37] 2026-03-25 15:45:43,588 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 16:46:37] 2026-03-25 15:46:07,708 | INFO     | PID=9144 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-25 16:46:37] 2026-03-25 15:46:07,709 | INFO     | .. there are 3 such processes running
[2026-03-25 16:46:37] 2026-03-25 15:46:07,709 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 16:46:37] 2026-03-25 15:46:07,709 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 16:46:37] 2026-03-25 15:46:07,709 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 16:46:37] 2026-03-25 15:46:30,654 | INFO     | [monitor] cgroup control has ended
[2026-03-25 16:46:37] 2026-03-25 15:46:32,349 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-03-25 16:46:37] 2026-03-25 15:46:32,834 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 16:46:37] 2026-03-25 15:46:32,834 | INFO     | [monitor] control thread has ended
[2026-03-25 16:46:37] 2026-03-25 15:46:37,374 | INFO     | all workflow threads have been joined
[2026-03-25 16:46:37] 2026-03-25 15:46:37,374 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 16:46:37] 2026-03-25 15:46:37,375 | INFO     | traces error code: 0
[2026-03-25 16:46:37] 2026-03-25 15:46:37,375 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 16:46:37] 2026-03-25 15:46:37,428 [wrapper] ==== pilot stdout END ====
[2026-03-25 16:46:37] 2026-03-25 15:46:37,429 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 16:46:37] 2026-03-25 15:46:37,430 [wrapper] pilotpid: 9144
[2026-03-25 16:46:37] 2026-03-25 15:46:37,432 [wrapper] Pilot exit status: 0
[2026-03-25 16:46:37] 2026-03-25 15:46:37,436 [wrapper] pandaids: 7057073528
[2026-03-25 16:46:37] 2026-03-25 15:46:37,462 [wrapper] cleanup supervisor_pilot 27177 9145
[2026-03-25 16:46:37] 2026-03-25 15:46:37,463 [wrapper] Test setup, not cleaning
[2026-03-25 16:46:37] 2026-03-25 15:46:37,464 [wrapper] apfmon messages muted
[2026-03-25 16:46:37] 2026-03-25 15:46:37,465 [wrapper] ==== wrapper stdout END ====
[2026-03-25 16:46:37] 2026-03-25 15:46:37,466 [wrapper] ==== wrapper stderr END ====
[2026-03-25 16:46:37]  *** Error codes and diagnostics ***
[2026-03-25 16:46:37]     "exeErrorCode": 0,
[2026-03-25 16:46:37]     "exeErrorDiag": "",
[2026-03-25 16:46:37]     "pilotErrorCode": 0,
[2026-03-25 16:46:37]     "pilotErrorDiag": "",
[2026-03-25 16:46:37]  *** Listing of results directory ***
[2026-03-25 16:46:37] total 472844
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user    585013 Mar 17 01:55 pilot3.tar.gz
[2026-03-25 16:46:37] -rwx------ 1 mf493845 unix-user     36322 Mar 17 01:58 runpilot2-wrapper.sh
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user      5111 Mar 17 02:00 queuedata.json
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user       100 Mar 25 13:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 16:46:37] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 25 13:43 run_atlas
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user       105 Mar 25 13:43 job.xml
[2026-03-25 16:46:37] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 14:45 start_atlas.sh
[2026-03-25 16:46:37] drwxrwx--x 2 mf493845 unix-user       100 Mar 25 14:45 shared
[2026-03-25 16:46:37] -rw-r--r-- 2 mf493845 unix-user    597541 Mar 25 14:45 input.tar.gz
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user      6390 Mar 25 14:45 init_data.xml
[2026-03-25 16:46:37] -rw-r--r-- 2 mf493845 unix-user 242260038 Mar 25 14:45 EVNT.49133299._000005.pool.root.1
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user         0 Mar 25 14:45 boinc_setup_complete
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user      8192 Mar 25 14:45 boinc_mmap_file
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user         0 Mar 25 14:45 boinc_lockfile
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user      2611 Mar 25 14:45 pandaJob.out
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user   1011913 Mar 25 14:45 agis_schedconf.cvmfs.json
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user   1511579 Mar 25 14:45 agis_ddmendpoints.agis.ALL.json
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user       420 Mar 25 14:45 workernode_map.json
[2026-03-25 16:46:37] drwx------ 5 mf493845 unix-user       440 Mar 25 14:45 pilot3
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user 235162213 Mar 25 16:45 HITS.49176275._000118.pool.root.1
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user      1021 Mar 25 16:45 memory_monitor_summary.json
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user    367714 Mar 25 16:45 log.49176275._000118.job.log.tgz.1
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user      6316 Mar 25 16:45 heartbeat.json
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user        95 Mar 25 16:46 pilot_heartbeat.json
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user      4830 Mar 25 16:46 pilotlog.txt
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user   1058680 Mar 25 16:46 log.49176275._000118.job.log.1
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user       357 Mar 25 16:46 output.list
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user       620 Mar 25 16:46 runtime_log
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user   1443840 Mar 25 16:46 result.tar.gz
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user      9219 Mar 25 16:46 runtime_log.err
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user       644 Mar 25 16:46 m78LDmSwXM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmubzLDmnKUm3n.diag
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user     21744 Mar 25 16:46 stderr.txt
[2026-03-25 16:46:37] HITS file was successfully produced:
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user 235162213 Mar 25 16:45 shared/HITS.pool.root.1
[2026-03-25 16:46:37]  *** Contents of shared directory: ***
[2026-03-25 16:46:37] total 468248
[2026-03-25 16:46:37] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 14:45 start_atlas.sh
[2026-03-25 16:46:37] -rw-r--r-- 2 mf493845 unix-user    597541 Mar 25 14:45 input.tar.gz
[2026-03-25 16:46:37] -rw-r--r-- 2 mf493845 unix-user 242260038 Mar 25 14:45 ATLAS.root_0
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user 235162213 Mar 25 16:45 HITS.pool.root.1
[2026-03-25 16:46:37] -rw------- 1 mf493845 unix-user   1443840 Mar 25 16:46 result.tar.gz
16:46:39 (3865): run_atlas exited; CPU time 52903.827263
16:46:39 (3865): called boinc_finish(0)

</stderr_txt>
]]>

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