Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
12:56:15 (3675700): wrapper (7.7.26015): starting
12:56:15 (3675700): wrapper: running run_atlas (--nthreads 12)
[2026-03-25 12:56:15] Arguments: --nthreads 12
[2026-03-25 12:56:15] Threads: 12
[2026-03-25 12:56:15] Checking for CVMFS
[2026-03-25 12:56:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 12:56:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 12:56:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 12:56:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 12:56:15] 2.11.0.0 1967501 723 83212 157684 2 228 6037710 6144001 13983 130560 0 5917872 99.999 29069 554 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-03-25 12:56:15] CVMFS is ok
[2026-03-25 12:56:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 12:56:16] Checking for apptainer binary...
[2026-03-25 12:56:16] apptainer is not installed, using version from CVMFS
[2026-03-25 12:56:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 12:56:16] radiat0r
[2026-03-25 12:56:16] apptainer works
[2026-03-25 12:56:16] Set ATHENA_PROC_NUMBER=12
[2026-03-25 12:56:16] Set ATHENA_CORE_NUMBER=12
[2026-03-25 12:56:16] Starting ATLAS job with PandaID=7057088790
[2026-03-25 12:56:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 15:02:56]  *** The last 200 lines of the pilot log: ***
[2026-03-25 15:02:56] 2026-03-25 15:01:46,708 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 15:02:56] 2026-03-25 15:01:46,708 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 15:02:56] 2026-03-25 15:01:46,709 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 15:02:56] 2026-03-25 15:01:46,709 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 15:02:56] 2026-03-25 15:01:46,712 | INFO     | fitting pss+swap vs Time
[2026-03-25 15:02:56] 2026-03-25 15:01:46,712 | INFO     | sum of square deviations: 576985702.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,713 | INFO     | sum of deviations: 27215780069.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,713 | INFO     | mean x: 1774447151.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,713 | INFO     | mean y: 2595465.62601626
[2026-03-25 15:02:56] 2026-03-25 15:01:46,713 | INFO     | intersect: -83696122263.91597
[2026-03-25 15:02:56] 2026-03-25 15:01:46,714 | INFO     | chi2: 2.6626277825160978
[2026-03-25 15:02:56] 2026-03-25 15:01:46,714 | INFO     | sum of square deviations: 509440249.5
[2026-03-25 15:02:56] 2026-03-25 15:01:46,715 | INFO     | sum of deviations: 34738073789.5
[2026-03-25 15:02:56] 2026-03-25 15:01:46,715 | INFO     | mean x: 1774446998.5
[2026-03-25 15:02:56] 2026-03-25 15:01:46,715 | INFO     | mean y: 2611772.093220339
[2026-03-25 15:02:56] 2026-03-25 15:01:46,715 | INFO     | intersect: -120994641252.0807
[2026-03-25 15:02:56] 2026-03-25 15:01:46,715 | INFO     | chi2: 1.8204214487891477
[2026-03-25 15:02:56] 2026-03-25 15:01:46,716 | INFO     | current chi2=1.8204214487891477 (change=31.630644705851157 %)
[2026-03-25 15:02:56] 2026-03-25 15:01:46,716 | INFO     | sum of square deviations: 447383272.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,716 | INFO     | sum of deviations: 32992270229.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,716 | INFO     | mean x: 1774446846.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,717 | INFO     | mean y: 2607479.3805309734
[2026-03-25 15:02:56] 2026-03-25 15:01:46,717 | INFO     | intersect: -130853938829.37093
[2026-03-25 15:02:56] 2026-03-25 15:01:46,717 | INFO     | chi2: 1.8171814051995268
[2026-03-25 15:02:56] 2026-03-25 15:01:46,717 | INFO     | current chi2=1.8171814051995268 (change=0.17798315833819944 %)
[2026-03-25 15:02:56] 2026-03-25 15:01:46,717 | INFO     | right removable region: 112
[2026-03-25 15:02:56] 2026-03-25 15:01:46,717 | INFO     | sum of square deviations: 509440249.5
[2026-03-25 15:02:56] 2026-03-25 15:01:46,718 | INFO     | sum of deviations: 3612015966.5
[2026-03-25 15:02:56] 2026-03-25 15:01:46,718 | INFO     | mean x: 1774447303.5
[2026-03-25 15:02:56] 2026-03-25 15:01:46,718 | INFO     | mean y: 2648043.5508474577
[2026-03-25 15:02:56] 2026-03-25 15:01:46,719 | INFO     | intersect: -12578478002.625193
[2026-03-25 15:02:56] 2026-03-25 15:01:46,719 | INFO     | chi2: 1.0268472259041324
[2026-03-25 15:02:56] 2026-03-25 15:01:46,719 | INFO     | current chi2=1.0268472259041324 (change=61.43481891660446 %)
[2026-03-25 15:02:56] 2026-03-25 15:01:46,719 | INFO     | sum of square deviations: 447383272.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,720 | INFO     | sum of deviations: -5082697571.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,720 | INFO     | mean x: 1774447456.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,720 | INFO     | mean y: 2669420.079646018
[2026-03-25 15:02:56] 2026-03-25 15:01:46,720 | INFO     | intersect: 20162072640.856148
[2026-03-25 15:02:56] 2026-03-25 15:01:46,720 | INFO     | chi2: 0.8726453027487173
[2026-03-25 15:02:56] 2026-03-25 15:01:46,720 | INFO     | current chi2=0.8726453027487173 (change=15.017026804512348 %)
[2026-03-25 15:02:56] 2026-03-25 15:01:46,720 | INFO     | left removable region: 20
[2026-03-25 15:02:56] 2026-03-25 15:01:46,721 | INFO     | sum of square deviations: 241429643.0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,721 | INFO     | sum of deviations: 1511821529.4999998
[2026-03-25 15:02:56] 2026-03-25 15:01:46,721 | INFO     | mean x: 1774447425.5
[2026-03-25 15:02:56] 2026-03-25 15:01:46,721 | INFO     | mean y: 2693881.5108695654
[2026-03-25 15:02:56] 2026-03-25 15:01:46,721 | INFO     | intersect: -11108815821.697973
[2026-03-25 15:02:56] 2026-03-25 15:01:46,722 | INFO     | chi2: 0.00032238989739512253
[2026-03-25 15:02:56] 2026-03-25 15:01:46,722 | INFO     | current memory leak: 6.26 B/s (using 92 data points, chi2=0.00)
[2026-03-25 15:02:56] 2026-03-25 15:01:46,722 | INFO     | could have reported an average CPU frequency of 2281 MHz (8 samples)
[2026-03-25 15:02:56] 2026-03-25 15:01:46,723 | INFO     | ..............................
[2026-03-25 15:02:56] 2026-03-25 15:01:46,723 | INFO     | . Timing measurements:
[2026-03-25 15:02:56] 2026-03-25 15:01:46,723 | INFO     | . get job = 0 s
[2026-03-25 15:02:56] 2026-03-25 15:01:46,723 | INFO     | . initial setup = 8 s
[2026-03-25 15:02:56] 2026-03-25 15:01:46,723 | INFO     | . payload setup = 13 s
[2026-03-25 15:02:56] 2026-03-25 15:01:46,723 | INFO     | . stage-in = 0 s
[2026-03-25 15:02:56] 2026-03-25 15:01:46,723 | INFO     | . payload execution = 7474 s
[2026-03-25 15:02:56] 2026-03-25 15:01:46,723 | INFO     | . stage-out = 0 s
[2026-03-25 15:02:56] 2026-03-25 15:01:46,724 | INFO     | . log creation = 0 s
[2026-03-25 15:02:56] 2026-03-25 15:01:46,724 | INFO     | ..............................
[2026-03-25 15:02:56] 2026-03-25 15:01:46,817 | INFO     | 
[2026-03-25 15:02:56] 2026-03-25 15:01:46,817 | INFO     | job summary report
[2026-03-25 15:02:56] 2026-03-25 15:01:46,818 | INFO     | --------------------------------------------------
[2026-03-25 15:02:56] 2026-03-25 15:01:46,818 | INFO     | PanDA job id: 7057088790
[2026-03-25 15:02:56] 2026-03-25 15:01:46,818 | INFO     | task id: 49176627
[2026-03-25 15:02:56] 2026-03-25 15:01:46,818 | INFO     | errors: (none)
[2026-03-25 15:02:56] 2026-03-25 15:01:46,818 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 15:02:56] 2026-03-25 15:01:46,818 | INFO     | pilot state: finished 
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | transexitcode: 0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | exeerrorcode: 0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | exeerrordiag: 
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | exitcode: 0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | exitmsg: OK
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | cpuconsumptiontime: 81356 s
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | nevents: 400
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | neventsw: 0
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | pid: 3686035
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | pgrp: 3686035
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | corecount: 12
[2026-03-25 15:02:56] 2026-03-25 15:01:46,819 | INFO     | event service: False
[2026-03-25 15:02:56] 2026-03-25 15:01:46,820 | INFO     | sizes: {0: 2280063, 1: 2280325, 11: 2280353, 7491: 2308174, 7492: 2308173, 7494: 2317413, 7497: 2317551}
[2026-03-25 15:02:56] 2026-03-25 15:01:46,820 | INFO     | --------------------------------------------------
[2026-03-25 15:02:56] 2026-03-25 15:01:46,820 | INFO     | 
[2026-03-25 15:02:56] 2026-03-25 15:01:46,820 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-03-25 15:02:56] 2026-03-25 15:01:46,853 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,853 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,853 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,854 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,854 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,854 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,854 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,854 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,854 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,854 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,855 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,855 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,855 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,855 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,856 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 15:02:56] 2026-03-25 15:01:46,856 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,856 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 15:02:56] 2026-03-25 15:01:46,856 | INFO     | job 7057088790 has completed (purged errors)
[2026-03-25 15:02:56] 2026-03-25 15:01:46,856 | INFO     | overall cleanup function is called
[2026-03-25 15:02:56] 2026-03-25 15:01:46,901 | WARNING  | process 3686035 can no longer be monitored (due to stat problems) - aborting
[2026-03-25 15:02:56] 2026-03-25 15:01:47,583 | INFO     | using path: /var/lib/boinc/slots/16/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 15:02:56] 2026-03-25 15:01:47,867 | INFO     | --- collectZombieJob: --- 10, [3686035]
[2026-03-25 15:02:56] 2026-03-25 15:01:47,867 | INFO     | zombie collector waiting for pid 3686035
[2026-03-25 15:02:56] 2026-03-25 15:01:47,868 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 15:02:56] 2026-03-25 15:01:47,868 | INFO     | collected zombie processes
[2026-03-25 15:02:56] 2026-03-25 15:01:47,868 | INFO     | will attempt to kill all subprocesses of pid=3686035
[2026-03-25 15:02:56] 2026-03-25 15:01:49,228 | INFO     | number of running child processes to parent process 3686035: 1
[2026-03-25 15:02:56] 2026-03-25 15:01:49,229 | INFO     | maximum number of monitored processes: 6
[2026-03-25 15:02:56] 2026-03-25 15:01:49,229 | INFO     | aborting job monitoring since job object (job id=7057088790) has expired
[2026-03-25 15:02:56] 2026-03-25 15:01:49,474 | INFO     | process IDs to be killed: [3686035] (in reverse order)
[2026-03-25 15:02:56] 2026-03-25 15:01:49,750 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 15:02:56] 2026-03-25 15:01:49,751 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 15:02:56] 2026-03-25 15:01:49,778 | INFO     | did not find any defunct processes belonging to 3686035
[2026-03-25 15:02:56] 2026-03-25 15:01:49,804 | INFO     | did not find any defunct processes belonging to 3686035
[2026-03-25 15:02:56] 2026-03-25 15:01:49,804 | INFO     | ready for new job
[2026-03-25 15:02:56] 2026-03-25 15:01:49,804 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 15:02:56] 2026-03-25 15:01:49,807 | INFO     | **************************************
[2026-03-25 15:02:56] 2026-03-25 15:01:49,807 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 15:02:56] 2026-03-25 15:01:49,807 | INFO     | **************************************
[2026-03-25 15:02:56] 2026-03-25 15:01:49,807 | INFO     | 
[2026-03-25 15:02:56] 2026-03-25 15:01:49,844 | INFO     | architecture information:
[2026-03-25 15:02:56] 2026-03-25 15:01:49,845 | INFO     | executing command: cat /etc/os-release
[2026-03-25 15:02:56] 2026-03-25 15:01:49,869 | INFO     | cat /etc/os-release:
[2026-03-25 15:02:56] NAME="CentOS Linux"
[2026-03-25 15:02:56] VERSION="7 (Core)"
[2026-03-25 15:02:56] ID="centos"
[2026-03-25 15:02:56] ID_LIKE="rhel fedora"
[2026-03-25 15:02:56] VERSION_ID="7"
[2026-03-25 15:02:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 15:02:56] ANSI_COLOR="0;31"
[2026-03-25 15:02:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 15:02:56] HOME_URL="https://www.centos.org/"
[2026-03-25 15:02:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 15:02:56] 
[2026-03-25 15:02:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 15:02:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 15:02:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 15:02:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 15:02:56] 
[2026-03-25 15:02:56] 2026-03-25 15:01:49,869 | INFO     | **************************************
[2026-03-25 15:02:56] 2026-03-25 15:01:50,370 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-03-25 15:02:56] 2026-03-25 15:01:50,398 | INFO     | sufficient remaining disk space (1716088995840 B)
[2026-03-25 15:02:56] 2026-03-25 15:01:50,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 15:02:56] 2026-03-25 15:01:50,399 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 15:02:56] 2026-03-25 15:01:50,399 | INFO     | update_server=False
[2026-03-25 15:02:56] 2026-03-25 15:01:50,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 15:02:56] 2026-03-25 15:01:50,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 15:02:56] 2026-03-25 15:01:50,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 15:02:56] 2026-03-25 15:01:50,401 | INFO     | aborting loop
[2026-03-25 15:02:56] 2026-03-25 15:01:50,534 | INFO     | all data control threads have been joined
[2026-03-25 15:02:56] 2026-03-25 15:01:50,778 | INFO     | all payload control threads have been joined
[2026-03-25 15:02:56] 2026-03-25 15:01:51,165 | INFO     | all job control threads have been joined
[2026-03-25 15:02:56] 2026-03-25 15:01:51,405 | INFO     | [job] retrieve thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:51,406 | INFO     | [job] job monitor thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:51,538 | INFO     | [data] control thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:51,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 15:02:56] 2026-03-25 15:01:51,782 | INFO     | [payload] control thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:51,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 15:02:56] 2026-03-25 15:01:51,920 | INFO     | [payload] validate_post thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:51,957 | INFO     | [data] copytool_in thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:52,171 | INFO     | [job] control thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:52,510 | INFO     | [job] validate thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:52,598 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:52,604 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:52,738 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:52,833 | INFO     | [job] queue monitor thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:52,838 | INFO     | [payload] failed_post thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:53,760 | INFO     | [data] copytool_out thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:01:54,407 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:02:01,016 | INFO     | job.realtimelogging is not enabled
[2026-03-25 15:02:56] 2026-03-25 15:02:02,021 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 15:02:56] 2026-03-25 15:02:19,579 | INFO     | PID=3680436 has CPU usage=16.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-25 15:02:56] 2026-03-25 15:02:19,579 | INFO     | .. there are 15 such processes running
[2026-03-25 15:02:56] 2026-03-25 15:02:19,579 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 15:02:56] 2026-03-25 15:02:19,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 15:02:56] 2026-03-25 15:02:19,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 15:02:56] 2026-03-25 15:02:49,622 | INFO     | [monitor] cgroup control has ended
[2026-03-25 15:02:56] 2026-03-25 15:02:50,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139805770393408)>', '<ExcThread(monitor, started 139805170050816)>']
[2026-03-25 15:02:56] 2026-03-25 15:02:51,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 15:02:56] 2026-03-25 15:02:51,723 | INFO     | [monitor] control thread has ended
[2026-03-25 15:02:56] 2026-03-25 15:02:55,934 | INFO     | all workflow threads have been joined
[2026-03-25 15:02:56] 2026-03-25 15:02:55,934 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 15:02:56] 2026-03-25 15:02:55,934 | INFO     | traces error code: 0
[2026-03-25 15:02:56] 2026-03-25 15:02:55,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 15:02:56] 2026-03-25 15:02:56,098 [wrapper] ==== pilot stdout END ====
[2026-03-25 15:02:56] 2026-03-25 15:02:56,103 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 15:02:56] 2026-03-25 15:02:56,107 [wrapper] pilotpid: 3680436
[2026-03-25 15:02:56] 2026-03-25 15:02:56,110 [wrapper] Pilot exit status: 0
[2026-03-25 15:02:56] 2026-03-25 15:02:56,125 [wrapper] pandaids: 7057088790
[2026-03-25 15:02:56] 2026-03-25 15:02:56,306 [wrapper] cleanup supervisor_pilot 3906235 3680437
[2026-03-25 15:02:56] 2026-03-25 15:02:56,311 [wrapper] Test setup, not cleaning
[2026-03-25 15:02:56] 2026-03-25 15:02:56,315 [wrapper] apfmon messages muted
[2026-03-25 15:02:56] 2026-03-25 15:02:56,319 [wrapper] ==== wrapper stdout END ====
[2026-03-25 15:02:56] 2026-03-25 15:02:56,322 [wrapper] ==== wrapper stderr END ====
[2026-03-25 15:02:56]  *** Error codes and diagnostics ***
[2026-03-25 15:02:56]     "exeErrorCode": 0,
[2026-03-25 15:02:56]     "exeErrorDiag": "",
[2026-03-25 15:02:56]     "pilotErrorCode": 0,
[2026-03-25 15:02:56]     "pilotErrorDiag": "",
[2026-03-25 15:02:56]  *** Listing of results directory ***
[2026-03-25 15:02:56] total 482024
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc    585013 Mar 17 00:55 pilot3.tar.gz
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc      5111 Mar 17 00:56 queuedata.json
[2026-03-25 15:02:56] -rwx------ 1 boinc boinc     36322 Mar 17 00:57 runpilot2-wrapper.sh
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc       100 Mar 25 12:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 15:02:56] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 12:56 run_atlas
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc       105 Mar 25 12:56 job.xml
[2026-03-25 15:02:56] -rw-r--r-- 2 boinc boinc     15845 Mar 25 12:56 start_atlas.sh
[2026-03-25 15:02:56] drwxrwx--x 2 boinc boinc      4096 Mar 25 12:56 shared
[2026-03-25 15:02:56] -rw-r--r-- 2 boinc boinc    597543 Mar 25 12:56 input.tar.gz
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc      9415 Mar 25 12:56 init_data.xml
[2026-03-25 15:02:56] -rw-r--r-- 2 boinc boinc 242147460 Mar 25 12:56 EVNT.49134598._000005.pool.root.1
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc         0 Mar 25 12:56 boinc_setup_complete
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc         0 Mar 25 12:56 boinc_lockfile
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc      2631 Mar 25 12:56 pandaJob.out
[2026-03-25 15:02:56] -rw------- 1 boinc boinc   1011913 Mar 25 12:56 agis_schedconf.cvmfs.json
[2026-03-25 15:02:56] -rw------- 1 boinc boinc   1511579 Mar 25 12:56 agis_ddmendpoints.agis.ALL.json
[2026-03-25 15:02:56] -rw------- 1 boinc boinc       420 Mar 25 12:56 workernode_map.json
[2026-03-25 15:02:56] drwx------ 5 boinc boinc      4096 Mar 25 12:56 pilot3
[2026-03-25 15:02:56] -rw------- 1 boinc boinc 244538892 Mar 25 15:00 HITS.49176627._000119.pool.root.1
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc       529 Mar 25 15:01 boinc_task_state.xml
[2026-03-25 15:02:56] -rw------- 1 boinc boinc        95 Mar 25 15:01 pilot_heartbeat.json
[2026-03-25 15:02:56] -rw------- 1 boinc boinc      1021 Mar 25 15:01 memory_monitor_summary.json
[2026-03-25 15:02:56] -rw------- 1 boinc boinc    432956 Mar 25 15:01 log.49176627._000119.job.log.tgz.1
[2026-03-25 15:02:56] -rw------- 1 boinc boinc      6274 Mar 25 15:01 heartbeat.json
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc      8192 Mar 25 15:02 boinc_mmap_file
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc        27 Mar 25 15:02 wrapper_checkpoint.txt
[2026-03-25 15:02:56] -rw------- 1 boinc boinc      4896 Mar 25 15:02 pilotlog.txt
[2026-03-25 15:02:56] -rw------- 1 boinc boinc   1047233 Mar 25 15:02 log.49176627._000119.job.log.1
[2026-03-25 15:02:56] -rw------- 1 boinc boinc       357 Mar 25 15:02 output.list
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc       620 Mar 25 15:02 runtime_log
[2026-03-25 15:02:56] -rw------- 1 boinc boinc   1495040 Mar 25 15:02 result.tar.gz
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc      8787 Mar 25 15:02 runtime_log.err
[2026-03-25 15:02:56] -rw------- 1 boinc boinc       644 Mar 25 15:02 6UCODm8uXM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm0YzLDmDjfsKm.diag
[2026-03-25 15:02:56] -rw-r--r-- 1 boinc boinc     20768 Mar 25 15:02 stderr.txt
[2026-03-25 15:02:56] HITS file was successfully produced:
[2026-03-25 15:02:56] -rw------- 1 boinc boinc 244538892 Mar 25 15:00 shared/HITS.pool.root.1
[2026-03-25 15:02:56]  *** Contents of shared directory: ***
[2026-03-25 15:02:56] total 477352
[2026-03-25 15:02:56] -rw-r--r-- 2 boinc boinc     15845 Mar 25 12:56 start_atlas.sh
[2026-03-25 15:02:56] -rw-r--r-- 2 boinc boinc    597543 Mar 25 12:56 input.tar.gz
[2026-03-25 15:02:56] -rw-r--r-- 2 boinc boinc 242147460 Mar 25 12:56 ATLAS.root_0
[2026-03-25 15:02:56] -rw------- 1 boinc boinc 244538892 Mar 25 15:00 HITS.pool.root.1
[2026-03-25 15:02:56] -rw------- 1 boinc boinc   1495040 Mar 25 15:02 result.tar.gz
15:02:57 (3675700): run_atlas exited; CPU time 81928.302650
15:02:57 (3675700): called boinc_finish(0)

</stderr_txt>
]]>

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