Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:04:57 (559409): wrapper (7.7.26015): starting
12:04:57 (559409): wrapper: running run_atlas (--nthreads 3)
[2026-03-26 12:04:57] Arguments: --nthreads 3
[2026-03-26 12:04:57] Threads: 3
[2026-03-26 12:04:57] Checking for CVMFS
[2026-03-26 12:04:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 12:04:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 12:05:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 12:05:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 12:05:19] 2.9.2.0 72862 5472 80156 157716 2 50 32176620 36864000 0 130560 0 1642107 99.978 184454 15224 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-26 12:05:19] CVMFS is ok
[2026-03-26 12:05:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 12:05:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 12:05:19] Further information can be found at the LHC@home message board.
[2026-03-26 12:05:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 12:05:19] Checking for apptainer binary...
[2026-03-26 12:05:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 12:05:19] Running /usr/bin/apptainer --version
[2026-03-26 12:05:19] apptainer version 1.4.1-1.1
[2026-03-26 12:05:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 12:05:20] thA312a
[2026-03-26 12:05:20] apptainer works
[2026-03-26 12:05:20] Set ATHENA_PROC_NUMBER=3
[2026-03-26 12:05:20] Set ATHENA_CORE_NUMBER=3
[2026-03-26 12:05:20] Starting ATLAS job with PandaID=7041827711
[2026-03-26 12:05:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 13:23:55]  *** The last 200 lines of the pilot log: ***
[2026-03-26 13:23:55] 2026-03-26 12:23:23,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-26 13:23:55] 2026-03-26 12:23:23,572 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-26 13:23:55] 2026-03-26 12:23:23,572 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-26 13:23:55] 2026-03-26 12:23:23,572 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-26 13:23:55] 2026-03-26 12:23:23,572 | INFO     | job 7041827711 has completed (purged errors)
[2026-03-26 13:23:55] 2026-03-26 12:23:23,572 | INFO     | overall cleanup function is called
[2026-03-26 13:23:55] 2026-03-26 12:23:24,579 | INFO     | --- collectZombieJob: --- 10, [567905]
[2026-03-26 13:23:55] 2026-03-26 12:23:24,579 | INFO     | zombie collector waiting for pid 567905
[2026-03-26 13:23:55] 2026-03-26 12:23:24,579 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-26 13:23:55] 2026-03-26 12:23:24,579 | INFO     | collected zombie processes
[2026-03-26 13:23:55] 2026-03-26 12:23:24,579 | INFO     | will attempt to kill all subprocesses of pid=567905
[2026-03-26 13:23:55] 2026-03-26 12:23:24,628 | INFO     | process IDs to be killed: [567905] (in reverse order)
[2026-03-26 13:23:55] 2026-03-26 12:23:24,656 | WARNING  | found no corresponding commands to process id(s)
[2026-03-26 13:23:55] 2026-03-26 12:23:24,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-26 13:23:55] 2026-03-26 12:23:24,657 | INFO     | did not find any defunct processes belonging to 567905
[2026-03-26 13:23:55] 2026-03-26 12:23:24,658 | INFO     | did not find any defunct processes belonging to 567905
[2026-03-26 13:23:55] 2026-03-26 12:23:24,658 | INFO     | ready for new job
[2026-03-26 13:23:55] 2026-03-26 12:23:24,658 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-26 13:23:55] 2026-03-26 12:23:24,659 | INFO     | **************************************
[2026-03-26 13:23:55] 2026-03-26 12:23:24,659 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-26 13:23:55] 2026-03-26 12:23:24,659 | INFO     | **************************************
[2026-03-26 13:23:55] 2026-03-26 12:23:24,659 | INFO     | 
[2026-03-26 13:23:55] 2026-03-26 12:23:24,660 | INFO     | architecture information:
[2026-03-26 13:23:55] 2026-03-26 12:23:24,660 | INFO     | executing command: cat /etc/os-release
[2026-03-26 13:23:55] 2026-03-26 12:23:24,669 | INFO     | cat /etc/os-release:
[2026-03-26 13:23:55] NAME="CentOS Linux"
[2026-03-26 13:23:55] VERSION="7 (Core)"
[2026-03-26 13:23:55] ID="centos"
[2026-03-26 13:23:55] ID_LIKE="rhel fedora"
[2026-03-26 13:23:55] VERSION_ID="7"
[2026-03-26 13:23:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-26 13:23:55] ANSI_COLOR="0;31"
[2026-03-26 13:23:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-26 13:23:55] HOME_URL="https://www.centos.org/"
[2026-03-26 13:23:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-26 13:23:55] 
[2026-03-26 13:23:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-26 13:23:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-26 13:23:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-26 13:23:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-26 13:23:55] 
[2026-03-26 13:23:55] 2026-03-26 12:23:24,669 | INFO     | **************************************
[2026-03-26 13:23:55] 2026-03-26 12:23:25,171 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-26 13:23:55] 2026-03-26 12:23:25,183 | INFO     | sufficient remaining disk space (269721010176 B)
[2026-03-26 13:23:55] 2026-03-26 12:23:25,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-26 13:23:55] 2026-03-26 12:23:25,184 | INFO     | current server update state: UPDATING_FINAL
[2026-03-26 13:23:55] 2026-03-26 12:23:25,184 | INFO     | update_server=False
[2026-03-26 13:23:55] 2026-03-26 12:23:25,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-26 13:23:55] 2026-03-26 12:23:25,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-26 13:23:55] 2026-03-26 12:23:25,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 13:23:55] 2026-03-26 12:23:25,184 | INFO     | aborting loop
[2026-03-26 13:23:55] 2026-03-26 12:23:25,184 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-26 13:23:55] 2026-03-26 12:23:25,722 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-26 13:23:55] 2026-03-26 12:23:26,190 | INFO     | [job] job monitor thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:26,190 | INFO     | [job] queue monitor thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:26,190 | INFO     | [job] retrieve thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:26,278 | INFO     | all data control threads have been joined
[2026-03-26 13:23:55] 2026-03-26 12:23:26,304 | INFO     | [payload] validate_post thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:26,379 | INFO     | all job control threads have been joined
[2026-03-26 13:23:55] 2026-03-26 12:23:26,648 | INFO     | [payload] failed_post thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:26,678 | INFO     | all payload control threads have been joined
[2026-03-26 13:23:55] 2026-03-26 12:23:27,070 | INFO     | [job] validate thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:27,155 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:27,172 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:27,284 | INFO     | [data] control thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:27,325 | INFO     | [data] copytool_in thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:27,378 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:27,384 | INFO     | [job] control thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:27,396 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:27,684 | INFO     | [payload] control thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:27,729 | INFO     | [data] copytool_out thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:29,191 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 13:23:55] 2026-03-26 12:23:36,076 | INFO     | [monitor] cgroup control has ended
[2026-03-26 13:23:55] 2026-03-26 12:23:37,808 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140306764064576)>', '<ExcThread(monitor, started 140305810568960)>']
[2026-03-26 13:23:55] 2026-03-26 12:23:42,824 | INFO     | all workflow threads have been joined
[2026-03-26 13:23:55] 2026-03-26 12:23:42,824 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 13:23:55] 2026-03-26 12:23:42,824 | INFO     | traces error code: 0
[2026-03-26 13:23:55] 2026-03-26 12:23:42,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 13:23:55] 2026-03-26 12:23:55,798 | INFO     | PID=563468 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-26 13:23:55] 2026-03-26 12:23:55,798 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 13:23:55] 2026-03-26 12:23:55,798 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 13:23:55] 2026-03-26 12:23:55,798 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 13:23:55] 2026-03-26 12:23:55,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 13:23:55] 2026-03-26 12:23:55,799 | INFO     | [monitor] control thread has ended
[2026-03-26 13:23:55] 2026-03-26 12:23:55,844 [wrapper] ==== pilot stdout END ====
[2026-03-26 13:23:55] 2026-03-26 12:23:55,847 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 13:23:55] 2026-03-26 12:23:55,849 [wrapper] pilotpid: 563468
[2026-03-26 13:23:55] 2026-03-26 12:23:55,852 [wrapper] Pilot exit status: 0
[2026-03-26 13:23:55] 2026-03-26 12:23:55,860 [wrapper] pandaids: 7041827711
[2026-03-26 13:23:55] 2026-03-26 12:23:55,878 [wrapper] cleanup supervisor_pilot  573721 563469
[2026-03-26 13:23:55] 2026-03-26 12:23:55,880 [wrapper] Test setup, not cleaning
[2026-03-26 13:23:55] 2026-03-26 12:23:55,883 [wrapper] apfmon messages muted
[2026-03-26 13:23:55] 2026-03-26 12:23:55,885 [wrapper] ==== wrapper stdout END ====
[2026-03-26 13:23:55] 2026-03-26 12:23:55,888 [wrapper] ==== wrapper stderr END ====
[2026-03-26 13:23:55]  *** Error codes and diagnostics ***
[2026-03-26 13:23:55]     "exeErrorCode": 0,
[2026-03-26 13:23:55]     "exeErrorDiag": "",
[2026-03-26 13:23:55]     "pilotErrorCode": 0,
[2026-03-26 13:23:55]     "pilotErrorDiag": "",
[2026-03-26 13:23:55]  *** Listing of results directory ***
[2026-03-26 13:23:55] total 615872
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc    584627 Mar 10 04:18 pilot3.tar.gz
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc      5111 Mar 10 04:54 queuedata.json
[2026-03-26 13:23:55] -rwx------ 1 boinc boinc     36322 Mar 10 04:54 runpilot2-wrapper.sh
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc       100 Mar 26 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 13:23:55] -rwxr-xr-x 1 boinc boinc      7986 Mar 26 12:04 run_atlas
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc       105 Mar 26 12:04 job.xml
[2026-03-26 13:23:55] -rw-r--r-- 2 boinc boinc 435641653 Mar 26 12:04 EVNT.46701403._000769.pool.root.1
[2026-03-26 13:23:55] -rw-r--r-- 2 boinc boinc    597959 Mar 26 12:04 input.tar.gz
[2026-03-26 13:23:55] -rw-r--r-- 2 boinc boinc     15845 Mar 26 12:04 start_atlas.sh
[2026-03-26 13:23:55] drwxrwx--x 2 boinc boinc      4096 Mar 26 12:04 shared
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc         0 Mar 26 12:04 boinc_setup_complete
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc      6446 Mar 26 12:04 init_data.xml
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc         0 Mar 26 12:04 boinc_lockfile
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc      2565 Mar 26 12:05 pandaJob.out
[2026-03-26 13:23:55] -rw------- 1 boinc boinc   1012192 Mar 26 12:05 agis_schedconf.cvmfs.json
[2026-03-26 13:23:55] -rw------- 1 boinc boinc   1511579 Mar 26 12:05 agis_ddmendpoints.agis.ALL.json
[2026-03-26 13:23:55] -rw------- 1 boinc boinc       424 Mar 26 12:05 workernode_map.json
[2026-03-26 13:23:55] drwx------ 5 boinc boinc      4096 Mar 26 12:05 pilot3
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc       530 Mar 26 13:22 boinc_task_state.xml
[2026-03-26 13:23:55] -rw------- 1 boinc boinc 189130216 Mar 26 13:23 HITS.48955006._038539.pool.root.1
[2026-03-26 13:23:55] -rw------- 1 boinc boinc      1012 Mar 26 13:23 memory_monitor_summary.json
[2026-03-26 13:23:55] -rw------- 1 boinc boinc    289528 Mar 26 13:23 log.48955006._038539.job.log.tgz.1
[2026-03-26 13:23:55] -rw------- 1 boinc boinc      6294 Mar 26 13:23 heartbeat.json
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc      8192 Mar 26 13:23 boinc_mmap_file
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc        27 Mar 26 13:23 wrapper_checkpoint.txt
[2026-03-26 13:23:55] -rw------- 1 boinc boinc       746 Mar 26 13:23 pilotlog.txt
[2026-03-26 13:23:55] -rw------- 1 boinc boinc        95 Mar 26 13:23 pilot_heartbeat.json
[2026-03-26 13:23:55] -rw------- 1 boinc boinc    687689 Mar 26 13:23 log.48955006._038539.job.log.1
[2026-03-26 13:23:55] -rw------- 1 boinc boinc       357 Mar 26 13:23 output.list
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc       620 Mar 26 13:23 runtime_log
[2026-03-26 13:23:55] -rw------- 1 boinc boinc    993280 Mar 26 13:23 result.tar.gz
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc      8901 Mar 26 13:23 runtime_log.err
[2026-03-26 13:23:55] -rw------- 1 boinc boinc       658 Mar 26 13:23 FJRNDmIM3J9n9Rq4apOajLDm4fhM0noT9bVooX4SDmy5bLDmKN5yHm.diag
[2026-03-26 13:23:55] -rw-r--r-- 1 boinc boinc     11199 Mar 26 13:23 stderr.txt
[2026-03-26 13:23:55] HITS file was successfully produced:
[2026-03-26 13:23:55] -rw------- 1 boinc boinc 189130216 Mar 26 13:23 shared/HITS.pool.root.1
[2026-03-26 13:23:55]  *** Contents of shared directory: ***
[2026-03-26 13:23:55] total 611712
[2026-03-26 13:23:55] -rw-r--r-- 2 boinc boinc 435641653 Mar 26 12:04 ATLAS.root_0
[2026-03-26 13:23:55] -rw-r--r-- 2 boinc boinc    597959 Mar 26 12:04 input.tar.gz
[2026-03-26 13:23:55] -rw-r--r-- 2 boinc boinc     15845 Mar 26 12:04 start_atlas.sh
[2026-03-26 13:23:55] -rw------- 1 boinc boinc 189130216 Mar 26 13:23 HITS.pool.root.1
[2026-03-26 13:23:55] -rw------- 1 boinc boinc    993280 Mar 26 13:23 result.tar.gz
13:23:57 (559409): run_atlas exited; CPU time 13014.320527
13:23:57 (559409): called boinc_finish(0)

</stderr_txt>
]]>

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