Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:35:16 (12323): wrapper (7.7.26015): starting
09:35:16 (12323): wrapper: running run_atlas (--nthreads 8)
[2026-03-25 09:35:16] Arguments: --nthreads 8
[2026-03-25 09:35:16] Threads: 8
[2026-03-25 09:35:16] Checking for CVMFS
[2026-03-25 09:35:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 09:35:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 09:35:16] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 09:35:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 09:35:16] 2.11.0.0 6383 159841 87772 157676 2 1 2201794 4096000 0 130560 1 15892426 99.758 8329347 319 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-25 09:35:16] CVMFS is ok
[2026-03-25 09:35:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 09:35:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 09:35:16] Further information can be found at the LHC@home message board.
[2026-03-25 09:35:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 09:35:16] Checking for apptainer binary...
[2026-03-25 09:35:16] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-25 09:35:16] apptainer is not installed, using version from CVMFS
[2026-03-25 09:35:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 09:35:17] WARNING: Environment variable TMPDIR already has value [/tmp/job_11392731/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node029
[2026-03-25 09:35:17] apptainer works
[2026-03-25 09:35:17] Set ATHENA_PROC_NUMBER=8
[2026-03-25 09:35:17] Set ATHENA_CORE_NUMBER=8
[2026-03-25 09:35:17] Starting ATLAS job with PandaID=7057001209
[2026-03-25 09:35:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11392731/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 11:25:41]  *** The last 200 lines of the pilot log: ***
[2026-03-25 11:25:41] 2026-03-25 10:24:58,372 | INFO     | using path: /tmp/job_11392731/atlas/pilot/slots/0/PanDA_Pilot-7057001209/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,372 | INFO     | extracted standard info from prmon json
[2026-03-25 11:25:41] 2026-03-25 10:24:58,373 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 11:25:41] 2026-03-25 10:24:58,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 11:25:41] 2026-03-25 10:24:58,373 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 11:25:41] 2026-03-25 10:24:58,373 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 11:25:41] 2026-03-25 10:24:58,374 | INFO     | fitting pss+swap vs Time
[2026-03-25 11:25:41] 2026-03-25 10:24:58,374 | INFO     | sum of square deviations: 390582207.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,374 | INFO     | sum of deviations: 10821234751.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,374 | INFO     | mean x: 1774431004.5
[2026-03-25 11:25:41] 2026-03-25 10:24:58,374 | INFO     | mean y: 2514941.4444444445
[2026-03-25 11:25:41] 2026-03-25 10:24:58,374 | INFO     | intersect: -49158798874.2339
[2026-03-25 11:25:41] 2026-03-25 10:24:58,374 | INFO     | chi2: 1.1412950513098592
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | sum of square deviations: 338804492.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | sum of deviations: 10335105743.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | mean x: 1774430852.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | mean y: 2513510.067961165
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | intersect: -54125843468.92269
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | chi2: 1.1430259504759777
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | current chi2=1.1430259504759777 (change=-0.1516609718172277 %)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | right removable region: 102
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | sum of square deviations: 338804492.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,375 | INFO     | sum of deviations: -1853303403.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | mean x: 1774431157.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | mean y: 2551352.6019417476
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | intersect: 9708914105.48223
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | chi2: 0.005849409741934374
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | current chi2=0.005849409741934374 (change=99.48747611450509 %)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | sum of square deviations: 291817564.5
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | sum of deviations: -2236368671.4999995
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | mean x: 1774431309.5
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | mean y: 2552576.5204081633
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | intersect: 13601057509.19563
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | chi2: 0.0041424603526892655
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | current chi2=0.0041424603526892655 (change=29.18156642383934 %)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,376 | INFO     | sum of square deviations: 249388862.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | sum of deviations: -2087978515.9999998
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | mean x: 1774431462.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | mean y: 2552035.376344086
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | intersect: 14858767910.688652
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | chi2: 0.003990799639065701
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | current chi2=0.003990799639065701 (change=3.6611264975682145 %)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | left removable region: 30
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | sum of square deviations: 115715658.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | sum of deviations: -727310991.0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | mean x: 1774431736.5
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | mean y: 2545999.777777778
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | intersect: 11155433405.349684
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | chi2: 0.002908791350458161
[2026-03-25 11:25:41] 2026-03-25 10:24:58,377 | INFO     | current memory leak: -6.29 B/s (using 72 data points, chi2=0.00)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | could have reported an average CPU frequency of 2365 MHz (7 samples)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | ..............................
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | . Timing measurements:
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | . get job = 0 s
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | . initial setup = 2 s
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | . payload setup = 3 s
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | . stage-in = 0 s
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | . payload execution = 6554 s
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | . stage-out = 0 s
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | . log creation = 0 s
[2026-03-25 11:25:41] 2026-03-25 10:24:58,378 | INFO     | ..............................
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | 
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | job summary report
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | --------------------------------------------------
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | PanDA job id: 7057001209
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | task id: 49176688
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | errors: (none)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | pilot state: finished 
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | transexitcode: 0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | exeerrorcode: 0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,424 | INFO     | exeerrordiag: 
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | exitcode: 0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | exitmsg: OK
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | cpuconsumptiontime: 49081 s
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | nevents: 400
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | neventsw: 0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | pid: 22834
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | pgrp: 22834
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | corecount: 8
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | event service: False
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | sizes: {0: 2280432, 11: 2280432, 6560: 2307719, 6561: 2307718, 6562: 2316802, 6563: 2317180}
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | --------------------------------------------------
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | 
[2026-03-25 11:25:41] 2026-03-25 10:24:58,425 | INFO     | executing command: ls -lF /tmp/job_11392731/atlas/pilot/slots/0
[2026-03-25 11:25:41] 2026-03-25 10:24:58,434 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | job 7057001209 has completed (purged errors)
[2026-03-25 11:25:41] 2026-03-25 10:24:58,435 | INFO     | overall cleanup function is called
[2026-03-25 11:25:41] 2026-03-25 10:24:59,441 | INFO     | --- collectZombieJob: --- 10, [22834]
[2026-03-25 11:25:41] 2026-03-25 10:24:59,441 | INFO     | zombie collector waiting for pid 22834
[2026-03-25 11:25:41] 2026-03-25 10:24:59,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 11:25:41] 2026-03-25 10:24:59,442 | INFO     | collected zombie processes
[2026-03-25 11:25:41] 2026-03-25 10:24:59,442 | INFO     | will attempt to kill all subprocesses of pid=22834
[2026-03-25 11:25:41] 2026-03-25 10:24:59,551 | INFO     | process IDs to be killed: [22834] (in reverse order)
[2026-03-25 11:25:41] 2026-03-25 10:24:59,592 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 11:25:41] 2026-03-25 10:24:59,592 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 11:25:41] 2026-03-25 10:24:59,597 | INFO     | did not find any defunct processes belonging to 22834
[2026-03-25 11:25:41] 2026-03-25 10:24:59,601 | INFO     | did not find any defunct processes belonging to 22834
[2026-03-25 11:25:41] 2026-03-25 10:24:59,601 | INFO     | ready for new job
[2026-03-25 11:25:41] 2026-03-25 10:24:59,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 11:25:41] 2026-03-25 10:24:59,602 | INFO     | **************************************
[2026-03-25 11:25:41] 2026-03-25 10:24:59,602 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 11:25:41] 2026-03-25 10:24:59,602 | INFO     | **************************************
[2026-03-25 11:25:41] 2026-03-25 10:24:59,602 | INFO     | 
[2026-03-25 11:25:41] 2026-03-25 10:24:59,616 | INFO     | architecture information:
[2026-03-25 11:25:41] 2026-03-25 10:24:59,616 | INFO     | executing command: cat /etc/os-release
[2026-03-25 11:25:41] 2026-03-25 10:24:59,622 | INFO     | cat /etc/os-release:
[2026-03-25 11:25:41] NAME="CentOS Linux"
[2026-03-25 11:25:41] VERSION="7 (Core)"
[2026-03-25 11:25:41] ID="centos"
[2026-03-25 11:25:41] ID_LIKE="rhel fedora"
[2026-03-25 11:25:41] VERSION_ID="7"
[2026-03-25 11:25:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 11:25:41] ANSI_COLOR="0;31"
[2026-03-25 11:25:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 11:25:41] HOME_URL="https://www.centos.org/"
[2026-03-25 11:25:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 11:25:41] 
[2026-03-25 11:25:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 11:25:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 11:25:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 11:25:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 11:25:41] 
[2026-03-25 11:25:41] 2026-03-25 10:24:59,622 | INFO     | **************************************
[2026-03-25 11:25:41] 2026-03-25 10:25:00,125 | INFO     | executing command: df -mP /tmp/job_11392731/atlas/pilot/slots/0
[2026-03-25 11:25:41] 2026-03-25 10:25:00,132 | INFO     | sufficient remaining disk space (224070205440 B)
[2026-03-25 11:25:41] 2026-03-25 10:25:00,132 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 11:25:41] 2026-03-25 10:25:00,132 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 11:25:41] 2026-03-25 10:25:00,132 | INFO     | update_server=False
[2026-03-25 11:25:41] 2026-03-25 10:25:00,132 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 11:25:41] 2026-03-25 10:25:00,132 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 11:25:41] 2026-03-25 10:25:00,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 11:25:41] 2026-03-25 10:25:00,608 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-25 11:25:41] 2026-03-25 10:25:00,608 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-25 11:25:41] 2026-03-25 10:25:00,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 11:25:41] 2026-03-25 10:25:00,609 | INFO     | will abort loop
[2026-03-25 11:25:41] 2026-03-25 10:25:00,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 11:25:41] 2026-03-25 10:25:00,804 | INFO     | all data control threads have been joined
[2026-03-25 11:25:41] 2026-03-25 10:25:00,859 | INFO     | all job control threads have been joined
[2026-03-25 11:25:41] 2026-03-25 10:25:01,137 | INFO     | [job] retrieve thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:01,137 | INFO     | [job] queue monitor thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:01,177 | INFO     | [data] copytool_in thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:01,368 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:01,606 | INFO     | all payload control threads have been joined
[2026-03-25 11:25:41] 2026-03-25 10:25:01,614 | INFO     | [job] job monitor thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:01,718 | INFO     | [payload] validate_post thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:01,809 | INFO     | [data] control thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:01,864 | INFO     | [job] control thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:02,113 | INFO     | job.realtimelogging is not enabled
[2026-03-25 11:25:41] 2026-03-25 10:25:02,140 | INFO     | [job] validate thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:02,262 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:02,377 | INFO     | [payload] failed_post thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:02,451 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:02,611 | INFO     | [payload] control thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:02,705 | INFO     | [data] copytool_out thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:03,118 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:04,137 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 11:25:41] 2026-03-25 10:25:28,971 | INFO     | 6577s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-25 11:25:41] 2026-03-25 10:25:30,110 | INFO     | PID=17210 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-25 11:25:41] 2026-03-25 10:25:30,110 | INFO     | .. there are 7 such processes running
[2026-03-25 11:25:41] 2026-03-25 10:25:30,110 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 11:25:41] 2026-03-25 10:25:30,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 11:25:41] 2026-03-25 10:25:30,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 11:25:41] 2026-03-25 10:25:34,512 | INFO     | [monitor] cgroup control has ended
[2026-03-25 11:25:41] 2026-03-25 10:25:36,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-03-25 11:25:41] 2026-03-25 10:25:37,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 11:25:41] 2026-03-25 10:25:37,145 | INFO     | [monitor] control thread has ended
[2026-03-25 11:25:41] 2026-03-25 10:25:41,370 | INFO     | all workflow threads have been joined
[2026-03-25 11:25:41] 2026-03-25 10:25:41,370 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 11:25:41] 2026-03-25 10:25:41,370 | INFO     | traces error code: 0
[2026-03-25 11:25:41] 2026-03-25 10:25:41,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 11:25:41] 2026-03-25 10:25:41,423 [wrapper] ==== pilot stdout END ====
[2026-03-25 11:25:41] 2026-03-25 10:25:41,425 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 11:25:41] 2026-03-25 10:25:41,426 [wrapper] pilotpid: 17210
[2026-03-25 11:25:41] 2026-03-25 10:25:41,427 [wrapper] Pilot exit status: 0
[2026-03-25 11:25:41] 2026-03-25 10:25:41,432 [wrapper] pandaids: 7057001209
[2026-03-25 11:25:41] 2026-03-25 10:25:41,455 [wrapper] cleanup supervisor_pilot  4283 17211
[2026-03-25 11:25:41] 2026-03-25 10:25:41,456 [wrapper] Test setup, not cleaning
[2026-03-25 11:25:41] 2026-03-25 10:25:41,457 [wrapper] apfmon messages muted
[2026-03-25 11:25:41] 2026-03-25 10:25:41,458 [wrapper] ==== wrapper stdout END ====
[2026-03-25 11:25:41] 2026-03-25 10:25:41,459 [wrapper] ==== wrapper stderr END ====
[2026-03-25 11:25:41]  *** Error codes and diagnostics ***
[2026-03-25 11:25:41]     "exeErrorCode": 0,
[2026-03-25 11:25:41]     "exeErrorDiag": "",
[2026-03-25 11:25:41]     "pilotErrorCode": 0,
[2026-03-25 11:25:41]     "pilotErrorDiag": "",
[2026-03-25 11:25:41]  *** Listing of results directory ***
[2026-03-25 11:25:41] total 461884
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user    585013 Mar 17 01:33 pilot3.tar.gz
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user      5111 Mar 17 01:33 queuedata.json
[2026-03-25 11:25:41] -rwx------ 1 mf493845 unix-user     36322 Mar 17 01:34 runpilot2-wrapper.sh
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user       100 Mar 25 08:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 11:25:41] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 25 08:34 run_atlas
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user       105 Mar 25 08:34 job.xml
[2026-03-25 11:25:41] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 09:35 start_atlas.sh
[2026-03-25 11:25:41] drwxrwx--x 2 mf493845 unix-user       100 Mar 25 09:35 shared
[2026-03-25 11:25:41] -rw-r--r-- 2 mf493845 unix-user    597531 Mar 25 09:35 input.tar.gz
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user      6390 Mar 25 09:35 init_data.xml
[2026-03-25 11:25:41] -rw-r--r-- 2 mf493845 unix-user 238842911 Mar 25 09:35 EVNT.49134869._000003.pool.root.1
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user         0 Mar 25 09:35 boinc_setup_complete
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user      8192 Mar 25 09:35 boinc_mmap_file
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user         0 Mar 25 09:35 boinc_lockfile
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user      2619 Mar 25 09:35 pandaJob.out
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user   1010820 Mar 25 09:35 agis_schedconf.cvmfs.json
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user   1511579 Mar 25 09:35 agis_ddmendpoints.agis.ALL.json
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user       415 Mar 25 09:35 workernode_map.json
[2026-03-25 11:25:41] drwx------ 5 mf493845 unix-user       440 Mar 25 09:35 pilot3
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user 227563229 Mar 25 11:24 HITS.49176688._000060.pool.root.1
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user      1016 Mar 25 11:24 memory_monitor_summary.json
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user        95 Mar 25 11:24 pilot_heartbeat.json
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user    349366 Mar 25 11:24 log.49176688._000060.job.log.tgz.1
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user      6300 Mar 25 11:24 heartbeat.json
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user      5204 Mar 25 11:25 pilotlog.txt
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user    974365 Mar 25 11:25 log.49176688._000060.job.log.1
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user       357 Mar 25 11:25 output.list
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user       620 Mar 25 11:25 runtime_log
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user   1341440 Mar 25 11:25 result.tar.gz
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user      9219 Mar 25 11:25 runtime_log.err
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user       646 Mar 25 11:25 CoiMDm0YXM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmhGzLDmoyrmam.diag
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user     21513 Mar 25 11:25 stderr.txt
[2026-03-25 11:25:41] HITS file was successfully produced:
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user 227563229 Mar 25 11:24 shared/HITS.pool.root.1
[2026-03-25 11:25:41]  *** Contents of shared directory: ***
[2026-03-25 11:25:41] total 457392
[2026-03-25 11:25:41] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 09:35 start_atlas.sh
[2026-03-25 11:25:41] -rw-r--r-- 2 mf493845 unix-user    597531 Mar 25 09:35 input.tar.gz
[2026-03-25 11:25:41] -rw-r--r-- 2 mf493845 unix-user 238842911 Mar 25 09:35 ATLAS.root_0
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user 227563229 Mar 25 11:24 HITS.pool.root.1
[2026-03-25 11:25:41] -rw------- 1 mf493845 unix-user   1341440 Mar 25 11:25 result.tar.gz
11:25:43 (12323): run_atlas exited; CPU time 49186.829384
11:25:43 (12323): called boinc_finish(0)

</stderr_txt>
]]>

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