Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:09:16 (1997414): wrapper (7.7.26015): starting
05:09:16 (1997414): wrapper: running run_atlas (--nthreads 4)
[2026-03-26 05:09:16] Arguments: --nthreads 4
[2026-03-26 05:09:16] Threads: 4
[2026-03-26 05:09:16] Checking for CVMFS
[2026-03-26 05:09:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 05:09:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 05:09:16] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 05:09:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 05:09:16] 2.9.2.0 1434237 4905 94284 157706 0 50 32178760 36864001 0 130560 0 2115604 99.984 171427 6904 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-26 05:09:16] CVMFS is ok
[2026-03-26 05:09:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 05:09:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 05:09:16] Further information can be found at the LHC@home message board.
[2026-03-26 05:09:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 05:09:16] Checking for apptainer binary...
[2026-03-26 05:09:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 05:09:16] Running /usr/bin/apptainer --version
[2026-03-26 05:09:16] apptainer version 1.4.1-1.1
[2026-03-26 05:09:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 05:09:16] magicA244a
[2026-03-26 05:09:16] apptainer works
[2026-03-26 05:09:16] Set ATHENA_PROC_NUMBER=4
[2026-03-26 05:09:16] Set ATHENA_CORE_NUMBER=4
[2026-03-26 05:09:16] Starting ATLAS job with PandaID=7056979997
[2026-03-26 05:09:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 07:39:10]  *** The last 200 lines of the pilot log: ***
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,337 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-26 07:39:10] 2026-03-26 06:38:38,338 | INFO     | job 7056979997 has completed (purged errors)
[2026-03-26 07:39:10] 2026-03-26 06:38:38,338 | INFO     | overall cleanup function is called
[2026-03-26 07:39:10] 2026-03-26 06:38:39,344 | INFO     | --- collectZombieJob: --- 10, [2006051]
[2026-03-26 07:39:10] 2026-03-26 06:38:39,345 | INFO     | zombie collector waiting for pid 2006051
[2026-03-26 07:39:10] 2026-03-26 06:38:39,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-26 07:39:10] 2026-03-26 06:38:39,345 | INFO     | collected zombie processes
[2026-03-26 07:39:10] 2026-03-26 06:38:39,345 | INFO     | will attempt to kill all subprocesses of pid=2006051
[2026-03-26 07:39:10] 2026-03-26 06:38:39,387 | INFO     | process IDs to be killed: [2006051] (in reverse order)
[2026-03-26 07:39:10] 2026-03-26 06:38:39,414 | WARNING  | found no corresponding commands to process id(s)
[2026-03-26 07:39:10] 2026-03-26 06:38:39,414 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-26 07:39:10] 2026-03-26 06:38:39,416 | INFO     | did not find any defunct processes belonging to 2006051
[2026-03-26 07:39:10] 2026-03-26 06:38:39,417 | INFO     | did not find any defunct processes belonging to 2006051
[2026-03-26 07:39:10] 2026-03-26 06:38:39,417 | INFO     | ready for new job
[2026-03-26 07:39:10] 2026-03-26 06:38:39,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-26 07:39:10] 2026-03-26 06:38:39,418 | INFO     | **************************************
[2026-03-26 07:39:10] 2026-03-26 06:38:39,418 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-26 07:39:10] 2026-03-26 06:38:39,418 | INFO     | **************************************
[2026-03-26 07:39:10] 2026-03-26 06:38:39,418 | INFO     | 
[2026-03-26 07:39:10] 2026-03-26 06:38:39,418 | INFO     | architecture information:
[2026-03-26 07:39:10] 2026-03-26 06:38:39,418 | INFO     | executing command: cat /etc/os-release
[2026-03-26 07:39:10] 2026-03-26 06:38:39,429 | INFO     | cat /etc/os-release:
[2026-03-26 07:39:10] NAME="CentOS Linux"
[2026-03-26 07:39:10] VERSION="7 (Core)"
[2026-03-26 07:39:10] ID="centos"
[2026-03-26 07:39:10] ID_LIKE="rhel fedora"
[2026-03-26 07:39:10] VERSION_ID="7"
[2026-03-26 07:39:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-26 07:39:10] ANSI_COLOR="0;31"
[2026-03-26 07:39:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-26 07:39:10] HOME_URL="https://www.centos.org/"
[2026-03-26 07:39:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-26 07:39:10] 
[2026-03-26 07:39:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-26 07:39:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-26 07:39:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-26 07:39:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-26 07:39:10] 
[2026-03-26 07:39:10] 2026-03-26 06:38:39,429 | INFO     | **************************************
[2026-03-26 07:39:10] 2026-03-26 06:38:39,932 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-26 07:39:10] 2026-03-26 06:38:39,946 | INFO     | sufficient remaining disk space (324724064256 B)
[2026-03-26 07:39:10] 2026-03-26 06:38:39,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-26 07:39:10] 2026-03-26 06:38:39,947 | INFO     | current server update state: UPDATING_FINAL
[2026-03-26 07:39:10] 2026-03-26 06:38:39,947 | INFO     | update_server=False
[2026-03-26 07:39:10] 2026-03-26 06:38:39,947 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-26 07:39:10] 2026-03-26 06:38:39,947 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 07:39:10] 2026-03-26 06:38:39,947 | INFO     | aborting loop
[2026-03-26 07:39:10] 2026-03-26 06:38:39,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-26 07:39:10] 2026-03-26 06:38:39,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-26 07:39:10] 2026-03-26 06:38:40,044 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-26 07:39:10] 2026-03-26 06:38:40,094 | INFO     | all data control threads have been joined
[2026-03-26 07:39:10] 2026-03-26 06:38:40,586 | INFO     | all payload control threads have been joined
[2026-03-26 07:39:10] 2026-03-26 06:38:40,659 | INFO     | [monitor] cgroup control has ended
[2026-03-26 07:39:10] 2026-03-26 06:38:40,952 | INFO     | [job] retrieve thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:40,953 | INFO     | [job] job monitor thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:40,953 | INFO     | [job] queue monitor thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:40,971 | INFO     | [data] copytool_in thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:40,990 | INFO     | [payload] failed_post thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:41,100 | INFO     | [data] control thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:41,176 | INFO     | all job control threads have been joined
[2026-03-26 07:39:10] 2026-03-26 06:38:41,465 | INFO     | [payload] validate_post thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:41,591 | INFO     | [payload] control thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:42,050 | INFO     | [data] copytool_out thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:42,087 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:42,130 | INFO     | [job] validate thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:42,156 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:42,182 | INFO     | [job] control thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:42,227 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:43,954 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:50,050 | INFO     | job.realtimelogging is not enabled
[2026-03-26 07:39:10] 2026-03-26 06:38:51,056 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 07:39:10] 2026-03-26 06:38:52,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139651377657664)>', '<ExcThread(monitor, started 139651012597504)>']
[2026-03-26 07:39:10] 2026-03-26 06:38:57,445 | INFO     | all workflow threads have been joined
[2026-03-26 07:39:10] 2026-03-26 06:38:57,445 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 07:39:10] 2026-03-26 06:38:57,445 | INFO     | traces error code: 0
[2026-03-26 07:39:10] 2026-03-26 06:38:57,445 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 07:39:10] 2026-03-26 06:39:10,186 | INFO     | PID=2001534 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-26 07:39:10] 2026-03-26 06:39:10,186 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 07:39:10] 2026-03-26 06:39:10,186 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 07:39:10] 2026-03-26 06:39:10,186 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 07:39:10] 2026-03-26 06:39:10,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 07:39:10] 2026-03-26 06:39:10,186 | INFO     | [monitor] control thread has ended
[2026-03-26 07:39:10] 2026-03-26 06:39:10,236 [wrapper] ==== pilot stdout END ====
[2026-03-26 07:39:10] 2026-03-26 06:39:10,238 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 07:39:10] 2026-03-26 06:39:10,241 [wrapper] pilotpid: 2001534
[2026-03-26 07:39:10] 2026-03-26 06:39:10,244 [wrapper] Pilot exit status: 0
[2026-03-26 07:39:10] 2026-03-26 06:39:10,252 [wrapper] pandaids: 7056979997
[2026-03-26 07:39:10] 2026-03-26 06:39:10,270 [wrapper] cleanup supervisor_pilot 2012012 2001535
[2026-03-26 07:39:10] 2026-03-26 06:39:10,272 [wrapper] Test setup, not cleaning
[2026-03-26 07:39:10] 2026-03-26 06:39:10,275 [wrapper] apfmon messages muted
[2026-03-26 07:39:10] 2026-03-26 06:39:10,278 [wrapper] ==== wrapper stdout END ====
[2026-03-26 07:39:10] 2026-03-26 06:39:10,280 [wrapper] ==== wrapper stderr END ====
[2026-03-26 07:39:10]  *** Error codes and diagnostics ***
[2026-03-26 07:39:10]     "exeErrorCode": 0,
[2026-03-26 07:39:10]     "exeErrorDiag": "",
[2026-03-26 07:39:10]     "pilotErrorCode": 0,
[2026-03-26 07:39:10]     "pilotErrorDiag": "",
[2026-03-26 07:39:10]  *** Listing of results directory ***
[2026-03-26 07:39:10] total 462708
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc    585013 Mar 16 20:43 pilot3.tar.gz
[2026-03-26 07:39:10] -rwx------ 1 boinc boinc     36322 Mar 16 20:44 runpilot2-wrapper.sh
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc      5111 Mar 16 20:47 queuedata.json
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc       100 Mar 26 05:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 07:39:10] -rwxr-xr-x 1 boinc boinc      7986 Mar 26 05:09 run_atlas
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc       105 Mar 26 05:09 job.xml
[2026-03-26 07:39:10] -rw-r--r-- 2 boinc boinc 234270294 Mar 26 05:09 EVNT.49136439._000022.pool.root.1
[2026-03-26 07:39:10] -rw-r--r-- 2 boinc boinc    597544 Mar 26 05:09 input.tar.gz
[2026-03-26 07:39:10] -rw-r--r-- 2 boinc boinc     15845 Mar 26 05:09 start_atlas.sh
[2026-03-26 07:39:10] drwxrwx--x 2 boinc boinc      4096 Mar 26 05:09 shared
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc         0 Mar 26 05:09 boinc_setup_complete
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc      6437 Mar 26 05:09 init_data.xml
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc         0 Mar 26 05:09 boinc_lockfile
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc      2607 Mar 26 05:09 pandaJob.out
[2026-03-26 07:39:10] -rw------- 1 boinc boinc   1012182 Mar 26 05:09 agis_schedconf.cvmfs.json
[2026-03-26 07:39:10] -rw------- 1 boinc boinc   1511579 Mar 26 05:09 agis_ddmendpoints.agis.ALL.json
[2026-03-26 07:39:10] -rw------- 1 boinc boinc       427 Mar 26 05:09 workernode_map.json
[2026-03-26 07:39:10] drwx------ 5 boinc boinc      4096 Mar 26 05:09 pilot3
[2026-03-26 07:39:10] -rw------- 1 boinc boinc        95 Mar 26 07:38 pilot_heartbeat.json
[2026-03-26 07:39:10] -rw------- 1 boinc boinc 232391284 Mar 26 07:38 HITS.49182169._000542.pool.root.1
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc       529 Mar 26 07:38 boinc_task_state.xml
[2026-03-26 07:39:10] -rw------- 1 boinc boinc      1014 Mar 26 07:38 memory_monitor_summary.json
[2026-03-26 07:39:10] -rw------- 1 boinc boinc    332581 Mar 26 07:38 log.49182169._000542.job.log.tgz.1
[2026-03-26 07:39:10] -rw------- 1 boinc boinc      6293 Mar 26 07:38 heartbeat.json
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc      8192 Mar 26 07:38 boinc_mmap_file
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc        27 Mar 26 07:38 wrapper_checkpoint.txt
[2026-03-26 07:39:10] -rw------- 1 boinc boinc       747 Mar 26 07:39 pilotlog.txt
[2026-03-26 07:39:10] -rw------- 1 boinc boinc   1276423 Mar 26 07:39 log.49182169._000542.job.log.1
[2026-03-26 07:39:10] -rw------- 1 boinc boinc       357 Mar 26 07:39 output.list
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc       620 Mar 26 07:39 runtime_log
[2026-03-26 07:39:10] -rw------- 1 boinc boinc   1628160 Mar 26 07:39 result.tar.gz
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc      8916 Mar 26 07:39 runtime_log.err
[2026-03-26 07:39:10] -rw------- 1 boinc boinc       662 Mar 26 07:39 UWrLDmo2SM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmEvvLDmh6BKgm.diag
[2026-03-26 07:39:10] -rw-r--r-- 1 boinc boinc     12642 Mar 26 07:39 stderr.txt
[2026-03-26 07:39:10] HITS file was successfully produced:
[2026-03-26 07:39:10] -rw------- 1 boinc boinc 232391284 Mar 26 07:38 shared/HITS.pool.root.1
[2026-03-26 07:39:10]  *** Contents of shared directory: ***
[2026-03-26 07:39:10] total 457924
[2026-03-26 07:39:10] -rw-r--r-- 2 boinc boinc 234270294 Mar 26 05:09 ATLAS.root_0
[2026-03-26 07:39:10] -rw-r--r-- 2 boinc boinc    597544 Mar 26 05:09 input.tar.gz
[2026-03-26 07:39:10] -rw-r--r-- 2 boinc boinc     15845 Mar 26 05:09 start_atlas.sh
[2026-03-26 07:39:10] -rw------- 1 boinc boinc 232391284 Mar 26 07:38 HITS.pool.root.1
[2026-03-26 07:39:10] -rw------- 1 boinc boinc   1628160 Mar 26 07:39 result.tar.gz
07:39:11 (1997414): run_atlas exited; CPU time 34185.120545
07:39:11 (1997414): called boinc_finish(0)

</stderr_txt>
]]>

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