Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:51 (25334): wrapper (7.7.26015): starting
00:00:51 (25334): wrapper: running run_atlas (--nthreads 8)
[2026-03-25 00:00:51] Arguments: --nthreads 8
[2026-03-25 00:00:51] Threads: 8
[2026-03-25 00:00:51] Checking for CVMFS
[2026-03-25 00:00:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 00:00:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 00:00:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 00:00:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 00:00:52] 2.11.2.0 4329 137195 262592 157668 2 50 13528857 18432000 1833 130560 0 71338702 99.958 6121868 19914 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-25 00:00:52] CVMFS is ok
[2026-03-25 00:00:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 00:00:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 00:00:52] Further information can be found at the LHC@home message board.
[2026-03-25 00:00:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 00:00:52] Checking for apptainer binary...
[2026-03-25 00:00:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 00:00:52] Running /usr/bin/apptainer --version
[2026-03-25 00:00:52] apptainer version 1.3.2-1.el7
[2026-03-25 00:00:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 00:00:53] c-206-17.aglt2.org
[2026-03-25 00:00:53] apptainer works
[2026-03-25 00:00:53] Set ATHENA_PROC_NUMBER=8
[2026-03-25 00:00:53] Set ATHENA_CORE_NUMBER=8
[2026-03-25 00:00:53] Starting ATLAS job with PandaID=7056979968
[2026-03-25 00:00:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:00:04 (25334): BOINC client no longer exists - exiting
04:00:04 (25334): timer handler: client dead, exiting
04:10:36 (32277): wrapper (7.7.26015): starting
04:10:36 (32277): wrapper: running run_atlas (--nthreads 8)
[2026-03-25 04:10:36] Arguments: --nthreads 8
[2026-03-25 04:10:36] Threads: 8
[2026-03-25 04:10:36] This job has been restarted, cleaning up previous attempt
[2026-03-25 04:10:36] Checking for CVMFS
[2026-03-25 04:10:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 04:10:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 04:10:36] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 04:10:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 04:10:36] 2.11.2.0 4329 137445 265916 157675 0 188 13579634 18432001 1 130560 0 71545821 99.959 6132885 19926 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-25 04:10:36] CVMFS is ok
[2026-03-25 04:10:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 04:10:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 04:10:36] Further information can be found at the LHC@home message board.
[2026-03-25 04:10:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 04:10:36] Checking for apptainer binary...
[2026-03-25 04:10:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 04:10:36] Running /usr/bin/apptainer --version
[2026-03-25 04:10:36] apptainer version 1.3.2-1.el7
[2026-03-25 04:10:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 04:10:37] c-206-17.aglt2.org
[2026-03-25 04:10:37] apptainer works
[2026-03-25 04:10:37] Set ATHENA_PROC_NUMBER=8
[2026-03-25 04:10:37] Set ATHENA_CORE_NUMBER=8
[2026-03-25 04:10:37] Starting ATLAS job with PandaID=7056979968
[2026-03-25 04:10:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 11:55:48]  *** The last 200 lines of the pilot log: ***
[2026-03-25 11:55:48] 2026-03-25 15:55:15,257 | INFO     | total number of processed events: 400 (read)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,259 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7056979968/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,260 | INFO     | extracted standard info from prmon json
[2026-03-25 11:55:48] 2026-03-25 15:55:15,260 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 11:55:48] 2026-03-25 15:55:15,260 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 11:55:48] 2026-03-25 15:55:15,260 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 11:55:48] 2026-03-25 15:55:15,260 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 11:55:48] 2026-03-25 15:55:15,266 | INFO     | fitting pss+swap vs Time
[2026-03-25 11:55:48] 2026-03-25 15:55:15,267 | INFO     | sum of square deviations: 29595449788.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,271 | INFO     | sum of deviations: 97330115443.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,271 | INFO     | mean x: 1774440185.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,271 | INFO     | mean y: 2501285.3435448576
[2026-03-25 11:55:48] 2026-03-25 15:55:15,271 | INFO     | intersect: -5833073753.72125
[2026-03-25 11:55:48] 2026-03-25 15:55:15,272 | INFO     | chi2: 2.211345150796201
[2026-03-25 11:55:48] 2026-03-25 15:55:15,272 | INFO     | sum of square deviations: 28634631773.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,276 | INFO     | sum of deviations: 126702652138.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,276 | INFO     | mean x: 1774440032.5
[2026-03-25 11:55:48] 2026-03-25 15:55:15,276 | INFO     | mean y: 2505904.296460177
[2026-03-25 11:55:48] 2026-03-25 15:55:15,276 | INFO     | intersect: -7849044622.348719
[2026-03-25 11:55:48] 2026-03-25 15:55:15,277 | INFO     | chi2: 1.4351897006648795
[2026-03-25 11:55:48] 2026-03-25 15:55:15,277 | INFO     | current chi2=1.4351897006648795 (change=35.09879268968322 %)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,278 | INFO     | sum of square deviations: 27694837408.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,281 | INFO     | sum of deviations: 125040310150.00003
[2026-03-25 11:55:48] 2026-03-25 15:55:15,282 | INFO     | mean x: 1774439880.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,282 | INFO     | mean y: 2505634.536912752
[2026-03-25 11:55:48] 2026-03-25 15:55:15,282 | INFO     | intersect: -8008969922.045956
[2026-03-25 11:55:48] 2026-03-25 15:55:15,282 | INFO     | chi2: 1.4349777892161706
[2026-03-25 11:55:48] 2026-03-25 15:55:15,282 | INFO     | current chi2=1.4349777892161706 (change=0.014765396421862581 %)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,282 | INFO     | right removable region: 446
[2026-03-25 11:55:48] 2026-03-25 15:55:15,283 | INFO     | sum of square deviations: 28634631773.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,287 | INFO     | sum of deviations: 24974378866.999992
[2026-03-25 11:55:48] 2026-03-25 15:55:15,287 | INFO     | mean x: 1774440337.5
[2026-03-25 11:55:48] 2026-03-25 15:55:15,287 | INFO     | mean y: 2512720.1194690266
[2026-03-25 11:55:48] 2026-03-25 15:55:15,287 | INFO     | intersect: -1545107854.0482802
[2026-03-25 11:55:48] 2026-03-25 15:55:15,288 | INFO     | chi2: 0.8389535989455933
[2026-03-25 11:55:48] 2026-03-25 15:55:15,288 | INFO     | current chi2=0.8389535989455933 (change=62.061390613603415 %)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,288 | INFO     | sum of square deviations: 27694837408.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,292 | INFO     | sum of deviations: 10140824158.999989
[2026-03-25 11:55:48] 2026-03-25 15:55:15,292 | INFO     | mean x: 1774440490.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,292 | INFO     | mean y: 2515118.192393736
[2026-03-25 11:55:48] 2026-03-25 15:55:15,293 | INFO     | intersect: -647219297.0925972
[2026-03-25 11:55:48] 2026-03-25 15:55:15,293 | INFO     | chi2: 0.7902951992902603
[2026-03-25 11:55:48] 2026-03-25 15:55:15,293 | INFO     | current chi2=0.7902951992902603 (change=5.7998916407877 %)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,293 | INFO     | left removable region: 20
[2026-03-25 11:55:48] 2026-03-25 15:55:15,294 | INFO     | sum of square deviations: 23972030862.5
[2026-03-25 11:55:48] 2026-03-25 15:55:15,297 | INFO     | sum of deviations: 30245402470.0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,298 | INFO     | mean x: 1774440459.5
[2026-03-25 11:55:48] 2026-03-25 15:55:15,298 | INFO     | mean y: 2521403.629107981
[2026-03-25 11:55:48] 2026-03-25 15:55:15,298 | INFO     | intersect: -2236282065.483072
[2026-03-25 11:55:48] 2026-03-25 15:55:15,298 | INFO     | chi2: 0.0022679376041368758
[2026-03-25 11:55:48] 2026-03-25 15:55:15,298 | INFO     | current memory leak: 1.26 B/s (using 426 data points, chi2=0.00)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,299 | INFO     | could have reported an average CPU frequency of 2378 MHz (19 samples)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,299 | INFO     | ..............................
[2026-03-25 11:55:48] 2026-03-25 15:55:15,299 | INFO     | . Timing measurements:
[2026-03-25 11:55:48] 2026-03-25 15:55:15,299 | INFO     | . get job = 0 s
[2026-03-25 11:55:48] 2026-03-25 15:55:15,299 | INFO     | . initial setup = 2 s
[2026-03-25 11:55:48] 2026-03-25 15:55:15,300 | INFO     | . payload setup = 9 s
[2026-03-25 11:55:48] 2026-03-25 15:55:15,300 | INFO     | . stage-in = 0 s
[2026-03-25 11:55:48] 2026-03-25 15:55:15,300 | INFO     | . payload execution = 27833 s
[2026-03-25 11:55:48] 2026-03-25 15:55:15,300 | INFO     | . stage-out = 2 s
[2026-03-25 11:55:48] 2026-03-25 15:55:15,300 | INFO     | . log creation = 0 s
[2026-03-25 11:55:48] 2026-03-25 15:55:15,300 | INFO     | ..............................
[2026-03-25 11:55:48] 2026-03-25 15:55:15,437 | INFO     | 
[2026-03-25 11:55:48] 2026-03-25 15:55:15,437 | INFO     | job summary report
[2026-03-25 11:55:48] 2026-03-25 15:55:15,437 | INFO     | --------------------------------------------------
[2026-03-25 11:55:48] 2026-03-25 15:55:15,437 | INFO     | PanDA job id: 7056979968
[2026-03-25 11:55:48] 2026-03-25 15:55:15,437 | INFO     | task id: 49182169
[2026-03-25 11:55:48] 2026-03-25 15:55:15,438 | INFO     | errors: (none)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,438 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 11:55:48] 2026-03-25 15:55:15,438 | INFO     | pilot state: finished 
[2026-03-25 11:55:48] 2026-03-25 15:55:15,438 | INFO     | transexitcode: 0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,438 | INFO     | exeerrorcode: 0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,438 | INFO     | exeerrordiag: 
[2026-03-25 11:55:48] 2026-03-25 15:55:15,439 | INFO     | exitcode: 0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,439 | INFO     | exitmsg: OK
[2026-03-25 11:55:48] 2026-03-25 15:55:15,439 | INFO     | cpuconsumptiontime: 215511 s
[2026-03-25 11:55:48] 2026-03-25 15:55:15,439 | INFO     | nevents: 400
[2026-03-25 11:55:48] 2026-03-25 15:55:15,439 | INFO     | neventsw: 0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,439 | INFO     | pid: 18990
[2026-03-25 11:55:48] 2026-03-25 15:55:15,440 | INFO     | pgrp: 18990
[2026-03-25 11:55:48] 2026-03-25 15:55:15,440 | INFO     | corecount: 8
[2026-03-25 11:55:48] 2026-03-25 15:55:15,440 | INFO     | event service: False
[2026-03-25 11:55:48] 2026-03-25 15:55:15,440 | INFO     | sizes: {0: 2280293, 11: 2280293, 27847: 2317021, 27849: 2326019, 27852: 2326269}
[2026-03-25 11:55:48] 2026-03-25 15:55:15,440 | INFO     | --------------------------------------------------
[2026-03-25 11:55:48] 2026-03-25 15:55:15,441 | INFO     | 
[2026-03-25 11:55:48] 2026-03-25 15:55:15,441 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-25 11:55:48] 2026-03-25 15:55:15,461 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,462 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,462 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,462 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,462 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,462 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,462 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,463 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,463 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,463 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,463 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,463 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,464 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,464 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,465 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,465 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 11:55:48] 2026-03-25 15:55:15,465 | INFO     | job 7056979968 has completed (purged errors)
[2026-03-25 11:55:48] 2026-03-25 15:55:15,465 | INFO     | overall cleanup function is called
[2026-03-25 11:55:48] 2026-03-25 15:55:16,474 | INFO     | --- collectZombieJob: --- 10, [18990]
[2026-03-25 11:55:48] 2026-03-25 15:55:16,474 | INFO     | zombie collector waiting for pid 18990
[2026-03-25 11:55:48] 2026-03-25 15:55:16,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 11:55:48] 2026-03-25 15:55:16,474 | INFO     | collected zombie processes
[2026-03-25 11:55:48] 2026-03-25 15:55:16,474 | INFO     | will attempt to kill all subprocesses of pid=18990
[2026-03-25 11:55:48] 2026-03-25 15:55:16,633 | INFO     | process IDs to be killed: [18990] (in reverse order)
[2026-03-25 11:55:48] 2026-03-25 15:55:16,687 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 11:55:48] 2026-03-25 15:55:16,688 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 11:55:48] 2026-03-25 15:55:16,693 | INFO     | did not find any defunct processes belonging to 18990
[2026-03-25 11:55:48] 2026-03-25 15:55:16,697 | INFO     | did not find any defunct processes belonging to 18990
[2026-03-25 11:55:48] 2026-03-25 15:55:16,698 | INFO     | ready for new job
[2026-03-25 11:55:48] 2026-03-25 15:55:16,698 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 11:55:48] 2026-03-25 15:55:16,700 | INFO     | **************************************
[2026-03-25 11:55:48] 2026-03-25 15:55:16,701 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 11:55:48] 2026-03-25 15:55:16,701 | INFO     | **************************************
[2026-03-25 11:55:48] 2026-03-25 15:55:16,701 | INFO     | 
[2026-03-25 11:55:48] 2026-03-25 15:55:16,702 | INFO     | architecture information:
[2026-03-25 11:55:48] 2026-03-25 15:55:16,703 | INFO     | executing command: cat /etc/os-release
[2026-03-25 11:55:48] 2026-03-25 15:55:16,719 | INFO     | cat /etc/os-release:
[2026-03-25 11:55:48] NAME="CentOS Linux"
[2026-03-25 11:55:48] VERSION="7 (Core)"
[2026-03-25 11:55:48] ID="centos"
[2026-03-25 11:55:48] ID_LIKE="rhel fedora"
[2026-03-25 11:55:48] VERSION_ID="7"
[2026-03-25 11:55:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 11:55:48] ANSI_COLOR="0;31"
[2026-03-25 11:55:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 11:55:48] HOME_URL="https://www.centos.org/"
[2026-03-25 11:55:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 11:55:48] 
[2026-03-25 11:55:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 11:55:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 11:55:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 11:55:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 11:55:48] 
[2026-03-25 11:55:48] 2026-03-25 15:55:16,720 | INFO     | **************************************
[2026-03-25 11:55:48] 2026-03-25 15:55:17,223 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-25 11:55:48] 2026-03-25 15:55:17,238 | INFO     | sufficient remaining disk space (27785166848 B)
[2026-03-25 11:55:48] 2026-03-25 15:55:17,239 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 11:55:48] 2026-03-25 15:55:17,239 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 11:55:48] 2026-03-25 15:55:17,239 | INFO     | update_server=False
[2026-03-25 11:55:48] 2026-03-25 15:55:17,239 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 11:55:48] 2026-03-25 15:55:17,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 11:55:48] 2026-03-25 15:55:17,240 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 11:55:48] 2026-03-25 15:55:17,275 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-25 11:55:48] 2026-03-25 15:55:17,276 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-25 11:55:48] 2026-03-25 15:55:17,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 11:55:48] 2026-03-25 15:55:17,276 | INFO     | will abort loop
[2026-03-25 11:55:48] 2026-03-25 15:55:17,611 | INFO     | all payload control threads have been joined
[2026-03-25 11:55:48] 2026-03-25 15:55:17,711 | INFO     | all job control threads have been joined
[2026-03-25 11:55:48] 2026-03-25 15:55:18,222 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 11:55:48] 2026-03-25 15:55:18,241 | INFO     | [job] retrieve thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:18,245 | INFO     | [job] queue monitor thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:18,282 | INFO     | [job] job monitor thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:18,313 | INFO     | all data control threads have been joined
[2026-03-25 11:55:48] 2026-03-25 15:55:18,550 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:18,616 | INFO     | [payload] control thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:18,670 | INFO     | [payload] failed_post thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:18,716 | INFO     | [job] control thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:19,318 | INFO     | [data] control thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:19,378 | INFO     | [payload] validate_post thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:19,501 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:19,536 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:19,544 | INFO     | [data] copytool_in thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:19,548 | INFO     | [job] validate thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:20,227 | INFO     | [data] copytool_out thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:21,246 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:27,850 | INFO     | job.realtimelogging is not enabled
[2026-03-25 11:55:48] 2026-03-25 15:55:28,855 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 11:55:48] 2026-03-25 15:55:37,781 | INFO     | [monitor] cgroup control has ended
[2026-03-25 11:55:48] 2026-03-25 15:55:37,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140034630068032)>', '<ExcThread(monitor, started 140033902237440)>']
[2026-03-25 11:55:48] 2026-03-25 15:55:43,001 | INFO     | all workflow threads have been joined
[2026-03-25 11:55:48] 2026-03-25 15:55:43,001 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 11:55:48] 2026-03-25 15:55:43,001 | INFO     | traces error code: 0
[2026-03-25 11:55:48] 2026-03-25 15:55:43,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 11:55:48] 2026-03-25 15:55:48,251 | INFO     | PID=11032 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-25 11:55:48] 2026-03-25 15:55:48,252 | INFO     | .. there are 3 such processes running
[2026-03-25 11:55:48] 2026-03-25 15:55:48,252 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 11:55:48] 2026-03-25 15:55:48,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 11:55:48] 2026-03-25 15:55:48,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 11:55:48] 2026-03-25 15:55:48,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 11:55:48] 2026-03-25 15:55:48,253 | INFO     | [monitor] control thread has ended
[2026-03-25 11:55:48] 2026-03-25 15:55:48,366 [wrapper] ==== pilot stdout END ====
[2026-03-25 11:55:48] 2026-03-25 15:55:48,368 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 11:55:48] 2026-03-25 15:55:48,369 [wrapper] pilotpid: 11032
[2026-03-25 11:55:48] 2026-03-25 15:55:48,371 [wrapper] Pilot exit status: 0
[2026-03-25 11:55:48] 2026-03-25 15:55:48,377 [wrapper] pandaids: 7056979968 7056979968
[2026-03-25 11:55:48] 2026-03-25 15:55:48,401 [wrapper] cleanup supervisor_pilot 31694 11033
[2026-03-25 11:55:48] 2026-03-25 15:55:48,403 [wrapper] Test setup, not cleaning
[2026-03-25 11:55:48] 2026-03-25 15:55:48,406 [wrapper] apfmon messages muted
[2026-03-25 11:55:48] 2026-03-25 15:55:48,407 [wrapper] ==== wrapper stdout END ====
[2026-03-25 11:55:48] 2026-03-25 15:55:48,409 [wrapper] ==== wrapper stderr END ====
[2026-03-25 11:55:48]  *** Error codes and diagnostics ***
[2026-03-25 11:55:48]     "exeErrorCode": 0,
[2026-03-25 11:55:48]     "exeErrorDiag": "",
[2026-03-25 11:55:48]     "pilotErrorCode": 0,
[2026-03-25 11:55:48]     "pilotErrorDiag": "",
[2026-03-25 11:55:48]  *** Listing of results directory ***
[2026-03-25 11:55:48] total 715448
[2026-03-25 11:55:48] drwx------ 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas    585013 Mar 16 15:43 pilot3.tar.gz
[2026-03-25 11:55:48] -rwx------ 1 boincer umatlas     36322 Mar 16 15:44 runpilot2-wrapper.sh
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas      5111 Mar 16 15:47 queuedata.json
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas       100 Mar 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 11:55:48] -rwxr-xr-x 1 boincer umatlas      7986 Mar 25 00:00 run_atlas
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas       105 Mar 25 00:00 job.xml
[2026-03-25 11:55:48] -rw-r--r-- 3 boincer umatlas 237569615 Mar 25 00:00 EVNT.49136439._000021.pool.root.1
[2026-03-25 11:55:48] -rw-r--r-- 3 boincer umatlas 237569615 Mar 25 00:00 ATLAS.root_0
[2026-03-25 11:55:48] -rw-r--r-- 2 boincer umatlas     15845 Mar 25 00:00 start_atlas.sh
[2026-03-25 11:55:48] drwxrwx--x 2 boincer umatlas      4096 Mar 25 00:00 shared
[2026-03-25 11:55:48] -rw-r--r-- 2 boincer umatlas    597546 Mar 25 00:00 input.tar.gz
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas         0 Mar 25 00:00 boinc_lockfile
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas      2607 Mar 25 04:10 pandaJob.out
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas        57 Mar 25 04:10 setup.sh.local
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas   1010852 Mar 25 04:10 agis_schedconf.cvmfs.json
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas       445 Mar 25 04:10 workernode_map.json
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas 244434579 Mar 25 11:54 HITS.49182169._000513.pool.root.1
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas       531 Mar 25 11:54 boinc_task_state.xml
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas      5953 Mar 25 11:54 init_data.xml
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas      1051 Mar 25 11:55 memory_monitor_summary.json
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas        96 Mar 25 11:55 pilot_heartbeat.json
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas   1511579 Mar 25 11:55 agis_ddmendpoints.agis.ALL.json
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas    660439 Mar 25 11:55 log.49182169._000513.job.log.tgz.1
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas      6417 Mar 25 11:55 heartbeat.json
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas      8192 Mar 25 11:55 boinc_mmap_file
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas        29 Mar 25 11:55 wrapper_checkpoint.txt
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas       820 Mar 25 11:55 pilotlog.txt
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas   3887082 Mar 25 11:55 log.49182169._000513.job.log.1
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas       357 Mar 25 11:55 output.list
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas       620 Mar 25 11:55 runtime_log
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas   4567040 Mar 25 11:55 result.tar.gz
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas      9427 Mar 25 11:55 runtime_log.err
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas       788 Mar 25 11:55 jOWLDmo2SM9n9Rq4apOajLDm4fhM0noT9bVooX4SDm5uvLDm21Hxln.diag
[2026-03-25 11:55:48] -rw-r--r-- 1 boincer umatlas     23256 Mar 25 11:55 stderr.txt
[2026-03-25 11:55:48] HITS file was successfully produced:
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas 244434579 Mar 25 11:54 shared/HITS.pool.root.1
[2026-03-25 11:55:48]  *** Contents of shared directory: ***
[2026-03-25 11:55:48] total 475780
[2026-03-25 11:55:48] -rw-r--r-- 3 boincer umatlas 237569615 Mar 25 00:00 ATLAS.root_0
[2026-03-25 11:55:48] -rw-r--r-- 2 boincer umatlas     15845 Mar 25 00:00 start_atlas.sh
[2026-03-25 11:55:48] -rw-r--r-- 2 boincer umatlas    597546 Mar 25 00:00 input.tar.gz
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas 244434579 Mar 25 11:54 HITS.pool.root.1
[2026-03-25 11:55:48] -rw------- 1 boincer umatlas   4567040 Mar 25 11:55 result.tar.gz
11:55:49 (32277): run_atlas exited; CPU time 215974.601341
11:55:49 (32277): called boinc_finish(0)

</stderr_txt>
]]>

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