Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:34:13 (1747358): wrapper (7.7.26015): starting
06:34:13 (1747358): wrapper: running run_atlas (--nthreads 4)
[2026-03-26 06:34:13] Arguments: --nthreads 4
[2026-03-26 06:34:13] Threads: 4
[2026-03-26 06:34:13] Checking for CVMFS
[2026-03-26 06:34:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 06:34:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 06:34:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 06:34:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 06:34:14] 2.9.2.0 1229985 4970 95752 157709 0 49 32493083 36864000 0 130560 0 2042061 99.983 173715 13693 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-26 06:34:14] CVMFS is ok
[2026-03-26 06:34:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 06:34:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 06:34:14] Further information can be found at the LHC@home message board.
[2026-03-26 06:34:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 06:34:14] Checking for apptainer binary...
[2026-03-26 06:34:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 06:34:14] Running /usr/bin/apptainer --version
[2026-03-26 06:34:14] apptainer version 1.4.1-1.1
[2026-03-26 06:34:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 06:34:14] thA369a
[2026-03-26 06:34:14] apptainer works
[2026-03-26 06:34:14] Set ATHENA_PROC_NUMBER=4
[2026-03-26 06:34:14] Set ATHENA_CORE_NUMBER=4
[2026-03-26 06:34:14] Starting ATLAS job with PandaID=7056980580
[2026-03-26 06:34:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 08:57:43]  *** The last 200 lines of the pilot log: ***
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-26 08:57:43] 2026-03-26 07:56:47,282 | INFO     | job 7056980580 has completed (purged errors)
[2026-03-26 08:57:43] 2026-03-26 07:56:47,283 | INFO     | overall cleanup function is called
[2026-03-26 08:57:43] 2026-03-26 07:56:48,289 | INFO     | --- collectZombieJob: --- 10, [1755975]
[2026-03-26 08:57:43] 2026-03-26 07:56:48,289 | INFO     | zombie collector waiting for pid 1755975
[2026-03-26 08:57:43] 2026-03-26 07:56:48,289 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-26 08:57:43] 2026-03-26 07:56:48,290 | INFO     | collected zombie processes
[2026-03-26 08:57:43] 2026-03-26 07:56:48,290 | INFO     | will attempt to kill all subprocesses of pid=1755975
[2026-03-26 08:57:43] 2026-03-26 07:56:48,333 | INFO     | process IDs to be killed: [1755975] (in reverse order)
[2026-03-26 08:57:43] 2026-03-26 07:56:48,360 | WARNING  | found no corresponding commands to process id(s)
[2026-03-26 08:57:43] 2026-03-26 07:56:48,361 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-26 08:57:43] 2026-03-26 07:56:48,362 | INFO     | did not find any defunct processes belonging to 1755975
[2026-03-26 08:57:43] 2026-03-26 07:56:48,363 | INFO     | did not find any defunct processes belonging to 1755975
[2026-03-26 08:57:43] 2026-03-26 07:56:48,363 | INFO     | ready for new job
[2026-03-26 08:57:43] 2026-03-26 07:56:48,363 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-26 08:57:43] 2026-03-26 07:56:48,364 | INFO     | **************************************
[2026-03-26 08:57:43] 2026-03-26 07:56:48,364 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-26 08:57:43] 2026-03-26 07:56:48,364 | INFO     | **************************************
[2026-03-26 08:57:43] 2026-03-26 07:56:48,364 | INFO     | 
[2026-03-26 08:57:43] 2026-03-26 07:56:48,365 | INFO     | architecture information:
[2026-03-26 08:57:43] 2026-03-26 07:56:48,365 | INFO     | executing command: cat /etc/os-release
[2026-03-26 08:57:43] 2026-03-26 07:56:48,374 | INFO     | cat /etc/os-release:
[2026-03-26 08:57:43] NAME="CentOS Linux"
[2026-03-26 08:57:43] VERSION="7 (Core)"
[2026-03-26 08:57:43] ID="centos"
[2026-03-26 08:57:43] ID_LIKE="rhel fedora"
[2026-03-26 08:57:43] VERSION_ID="7"
[2026-03-26 08:57:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-26 08:57:43] ANSI_COLOR="0;31"
[2026-03-26 08:57:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-26 08:57:43] HOME_URL="https://www.centos.org/"
[2026-03-26 08:57:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-26 08:57:43] 
[2026-03-26 08:57:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-26 08:57:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-26 08:57:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-26 08:57:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-26 08:57:43] 
[2026-03-26 08:57:43] 2026-03-26 07:56:48,374 | INFO     | **************************************
[2026-03-26 08:57:43] 2026-03-26 07:56:48,878 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-26 08:57:43] 2026-03-26 07:56:48,892 | INFO     | sufficient remaining disk space (224302989312 B)
[2026-03-26 08:57:43] 2026-03-26 07:56:48,892 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-26 08:57:43] 2026-03-26 07:56:48,892 | INFO     | current server update state: UPDATING_FINAL
[2026-03-26 08:57:43] 2026-03-26 07:56:48,892 | INFO     | update_server=False
[2026-03-26 08:57:43] 2026-03-26 07:56:48,892 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-26 08:57:43] 2026-03-26 07:56:48,892 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-26 08:57:43] 2026-03-26 07:56:49,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 08:57:43] 2026-03-26 07:56:49,157 | INFO     | aborting loop
[2026-03-26 08:57:43] 2026-03-26 07:56:49,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-26 08:57:43] 2026-03-26 07:56:49,824 | INFO     | all payload control threads have been joined
[2026-03-26 08:57:43] 2026-03-26 07:56:49,853 | INFO     | all data control threads have been joined
[2026-03-26 08:57:43] 2026-03-26 07:56:49,898 | INFO     | [job] queue monitor thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:49,898 | INFO     | [job] retrieve thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:50,159 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:50,163 | INFO     | [job] job monitor thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:50,269 | INFO     | [payload] validate_post thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:50,572 | INFO     | all job control threads have been joined
[2026-03-26 08:57:43] 2026-03-26 07:56:50,780 | INFO     | [job] validate thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:50,829 | INFO     | [payload] control thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:50,858 | INFO     | [data] control thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:50,938 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:50,941 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:51,124 | INFO     | [payload] failed_post thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:51,137 | INFO     | [data] copytool_in thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:51,346 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:51,455 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-26 08:57:43] 2026-03-26 07:56:51,478 | INFO     | [data] copytool_out thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:51,577 | INFO     | [job] control thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:56:55,462 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 08:57:43] 2026-03-26 07:57:19,484 | INFO     | PID=1751472 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-26 08:57:43] 2026-03-26 07:57:19,485 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 08:57:43] 2026-03-26 07:57:19,485 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 08:57:43] 2026-03-26 07:57:19,485 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 08:57:43] 2026-03-26 07:57:38,170 | INFO     | [monitor] cgroup control has ended
[2026-03-26 08:57:43] 2026-03-26 07:57:38,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140250560943936)>', '<ExcThread(monitor, started 140249405585152)>']
[2026-03-26 08:57:43] 2026-03-26 07:57:39,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 08:57:43] 2026-03-26 07:57:39,589 | INFO     | [monitor] control thread has ended
[2026-03-26 08:57:43] 2026-03-26 07:57:43,801 | INFO     | all workflow threads have been joined
[2026-03-26 08:57:43] 2026-03-26 07:57:43,802 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 08:57:43] 2026-03-26 07:57:43,802 | INFO     | traces error code: 0
[2026-03-26 08:57:43] 2026-03-26 07:57:43,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 08:57:43] 2026-03-26 07:57:43,856 [wrapper] ==== pilot stdout END ====
[2026-03-26 08:57:43] 2026-03-26 07:57:43,859 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 08:57:43] 2026-03-26 07:57:43,862 [wrapper] pilotpid: 1751472
[2026-03-26 08:57:43] 2026-03-26 07:57:43,864 [wrapper] Pilot exit status: 0
[2026-03-26 08:57:43] 2026-03-26 07:57:43,873 [wrapper] pandaids: 7056980580
[2026-03-26 08:57:43] 2026-03-26 07:57:43,892 [wrapper] cleanup supervisor_pilot 1761297 1751473
[2026-03-26 08:57:43] 2026-03-26 07:57:43,894 [wrapper] Test setup, not cleaning
[2026-03-26 08:57:43] 2026-03-26 07:57:43,897 [wrapper] apfmon messages muted
[2026-03-26 08:57:43] 2026-03-26 07:57:43,899 [wrapper] ==== wrapper stdout END ====
[2026-03-26 08:57:43] 2026-03-26 07:57:43,902 [wrapper] ==== wrapper stderr END ====
[2026-03-26 08:57:43]  *** Error codes and diagnostics ***
[2026-03-26 08:57:43]     "exeErrorCode": 0,
[2026-03-26 08:57:43]     "exeErrorDiag": "",
[2026-03-26 08:57:43]     "pilotErrorCode": 0,
[2026-03-26 08:57:43]     "pilotErrorDiag": "",
[2026-03-26 08:57:43]  *** Listing of results directory ***
[2026-03-26 08:57:43] total 464128
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc    585013 Mar 16 20:40 pilot3.tar.gz
[2026-03-26 08:57:43] -rwx------ 1 boinc boinc     36322 Mar 16 20:41 runpilot2-wrapper.sh
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc      5111 Mar 16 20:42 queuedata.json
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc       100 Mar 26 06:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 08:57:43] -rwxr-xr-x 1 boinc boinc      7986 Mar 26 06:34 run_atlas
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc       105 Mar 26 06:34 job.xml
[2026-03-26 08:57:43] -rw-r--r-- 2 boinc boinc 235877590 Mar 26 06:34 EVNT.49136609._000004.pool.root.1
[2026-03-26 08:57:43] -rw-r--r-- 2 boinc boinc    597549 Mar 26 06:34 input.tar.gz
[2026-03-26 08:57:43] -rw-r--r-- 2 boinc boinc     15845 Mar 26 06:34 start_atlas.sh
[2026-03-26 08:57:43] drwxrwx--x 2 boinc boinc      4096 Mar 26 06:34 shared
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc         0 Mar 26 06:34 boinc_setup_complete
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc      6442 Mar 26 06:34 init_data.xml
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc         0 Mar 26 06:34 boinc_lockfile
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc      2653 Mar 26 06:34 pandaJob.out
[2026-03-26 08:57:43] -rw------- 1 boinc boinc   1012182 Mar 26 06:34 agis_schedconf.cvmfs.json
[2026-03-26 08:57:43] -rw------- 1 boinc boinc   1511579 Mar 26 06:34 agis_ddmendpoints.agis.ALL.json
[2026-03-26 08:57:43] -rw------- 1 boinc boinc       424 Mar 26 06:34 workernode_map.json
[2026-03-26 08:57:43] drwx------ 5 boinc boinc      4096 Mar 26 06:34 pilot3
[2026-03-26 08:57:43] -rw------- 1 boinc boinc 232371380 Mar 26 08:56 HITS.49182269._000093.pool.root.1
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc       529 Mar 26 08:56 boinc_task_state.xml
[2026-03-26 08:57:43] -rw------- 1 boinc boinc      1016 Mar 26 08:56 memory_monitor_summary.json
[2026-03-26 08:57:43] -rw------- 1 boinc boinc    324156 Mar 26 08:56 log.49182269._000093.job.log.tgz.1
[2026-03-26 08:57:43] -rw------- 1 boinc boinc      6289 Mar 26 08:56 heartbeat.json
[2026-03-26 08:57:43] -rw------- 1 boinc boinc        95 Mar 26 08:57 pilot_heartbeat.json
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc        27 Mar 26 08:57 wrapper_checkpoint.txt
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc      8192 Mar 26 08:57 boinc_mmap_file
[2026-03-26 08:57:43] -rw------- 1 boinc boinc      4748 Mar 26 08:57 pilotlog.txt
[2026-03-26 08:57:43] -rw------- 1 boinc boinc   1219422 Mar 26 08:57 log.49182269._000093.job.log.1
[2026-03-26 08:57:43] -rw------- 1 boinc boinc       357 Mar 26 08:57 output.list
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc       620 Mar 26 08:57 runtime_log
[2026-03-26 08:57:43] -rw------- 1 boinc boinc   1556480 Mar 26 08:57 result.tar.gz
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc      8901 Mar 26 08:57 runtime_log.err
[2026-03-26 08:57:43] -rw------- 1 boinc boinc       659 Mar 26 08:57 Fn0KDm6zSM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmexyLDm8AsJTn.diag
[2026-03-26 08:57:43] -rw-r--r-- 1 boinc boinc     12139 Mar 26 08:57 stderr.txt
[2026-03-26 08:57:43] HITS file was successfully produced:
[2026-03-26 08:57:43] -rw------- 1 boinc boinc 232371380 Mar 26 08:56 shared/HITS.pool.root.1
[2026-03-26 08:57:43]  *** Contents of shared directory: ***
[2026-03-26 08:57:43] total 459408
[2026-03-26 08:57:43] -rw-r--r-- 2 boinc boinc 235877590 Mar 26 06:34 ATLAS.root_0
[2026-03-26 08:57:43] -rw-r--r-- 2 boinc boinc    597549 Mar 26 06:34 input.tar.gz
[2026-03-26 08:57:43] -rw-r--r-- 2 boinc boinc     15845 Mar 26 06:34 start_atlas.sh
[2026-03-26 08:57:43] -rw------- 1 boinc boinc 232371380 Mar 26 08:56 HITS.pool.root.1
[2026-03-26 08:57:43] -rw------- 1 boinc boinc   1556480 Mar 26 08:57 result.tar.gz
08:57:44 (1747358): run_atlas exited; CPU time 32573.153970
08:57:44 (1747358): called boinc_finish(0)

</stderr_txt>
]]>

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