Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:41:08 (16619): wrapper (7.7.26015): starting
04:41:08 (16619): wrapper: running run_atlas (--nthreads 8)
[2026-03-25 04:41:08] Arguments: --nthreads 8
[2026-03-25 04:41:08] Threads: 8
[2026-03-25 04:41:08] Checking for CVMFS
[2026-03-25 04:41:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 04:41:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 04:41:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 04:41:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 04:41:09] 2.11.0.0 7894 236490 120588 157668 2 188 2863200 4096001 4365 130560 4 33504666 99.804 14065004 374 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-25 04:41:09] CVMFS is ok
[2026-03-25 04:41:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 04:41:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 04:41:09] Further information can be found at the LHC@home message board.
[2026-03-25 04:41:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 04:41:09] Checking for apptainer binary...
[2026-03-25 04:41:09] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-25 04:41:09] apptainer is not installed, using version from CVMFS
[2026-03-25 04:41:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 04:41:09] WARNING: Environment variable TMPDIR already has value [/tmp/job_11389808/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node075
[2026-03-25 04:41:09] apptainer works
[2026-03-25 04:41:09] Set ATHENA_PROC_NUMBER=8
[2026-03-25 04:41:09] Set ATHENA_CORE_NUMBER=8
[2026-03-25 04:41:09] Starting ATLAS job with PandaID=7056976671
[2026-03-25 04:41:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11389808/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 06:48:44]  *** The last 200 lines of the pilot log: ***
[2026-03-25 06:48:44] 2026-03-25 05:48:12,556 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,556 | INFO     | log transfer has been attempted: DONE
[2026-03-25 06:48:44] 2026-03-25 05:48:12,556 | INFO     | job 7056976671 has finished - writing final server update
[2026-03-25 06:48:44] 2026-03-25 05:48:12,556 | INFO     | total number of processed events: 400 (read)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,573 | INFO     | using path: /tmp/job_11389808/atlas/pilot/slots/0/PanDA_Pilot-7056976671/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,574 | INFO     | extracted standard info from prmon json
[2026-03-25 06:48:44] 2026-03-25 05:48:12,574 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 06:48:44] 2026-03-25 05:48:12,574 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 06:48:44] 2026-03-25 05:48:12,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 06:48:44] 2026-03-25 05:48:12,574 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 06:48:44] 2026-03-25 05:48:12,575 | INFO     | fitting pss+swap vs Time
[2026-03-25 06:48:44] 2026-03-25 05:48:12,575 | INFO     | sum of square deviations: 605592750.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,575 | INFO     | sum of deviations: 15391471017.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,575 | INFO     | mean x: 1774413876.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,575 | INFO     | mean y: 2502739.608
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | intersect: -45095196571.71406
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | chi2: 1.1620448770372214
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | sum of square deviations: 535786790.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | sum of deviations: 14614997045.500002
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | mean x: 1774413723.5
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | mean y: 2501044.275
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | intersect: -48399310666.02707
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | chi2: 1.1633765773759681
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | current chi2=1.1633765773759681 (change=-0.1145997340603644 %)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | right removable region: 119
[2026-03-25 06:48:44] 2026-03-25 05:48:12,576 | INFO     | sum of square deviations: 535786790.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,577 | INFO     | sum of deviations: -592893434.4999999
[2026-03-25 06:48:44] 2026-03-25 05:48:12,577 | INFO     | mean x: 1774414028.5
[2026-03-25 06:48:44] 2026-03-25 05:48:12,577 | INFO     | mean y: 2537053.2916666665
[2026-03-25 06:48:44] 2026-03-25 05:48:12,577 | INFO     | intersect: 1966076370.0828583
[2026-03-25 06:48:44] 2026-03-25 05:48:12,577 | INFO     | chi2: 0.005312280988528145
[2026-03-25 06:48:44] 2026-03-25 05:48:12,577 | INFO     | current chi2=0.005312280988528145 (change=99.54285061674446 %)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,577 | INFO     | sum of square deviations: 471562330.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,577 | INFO     | sum of deviations: -1183552866.0000005
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | mean x: 1774414181.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | mean y: 2538433.8
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | intersect: 4456059963.803454
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | chi2: 0.0037277305134584397
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | current chi2=0.0037277305134584397 (change=29.828062154308803 %)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | sum of square deviations: 412686807.5
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | sum of deviations: -867544501.0000002
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | mean x: 1774414333.5
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | mean y: 2537604.581818182
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | intersect: 3732686883.7625093
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | chi2: 0.003528991876021329
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | current chi2=0.003528991876021329 (change=5.331357422957302 %)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,578 | INFO     | left removable region: 30
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | sum of square deviations: 218571540.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | sum of deviations: 400765669.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | mean x: 1774414608.0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | mean y: 2532373.595505618
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | intersect: -3250976557.432261
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | chi2: 0.0013609984925335224
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | current memory leak: 1.83 B/s (using 89 data points, chi2=0.00)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | could have reported an average CPU frequency of 2456 MHz (8 samples)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | ..............................
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | . Timing measurements:
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | . get job = 0 s
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | . initial setup = 2 s
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | . payload setup = 4 s
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | . stage-in = 0 s
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | . payload execution = 7594 s
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | . stage-out = 0 s
[2026-03-25 06:48:44] 2026-03-25 05:48:12,579 | INFO     | . log creation = 0 s
[2026-03-25 06:48:44] 2026-03-25 05:48:12,580 | INFO     | ..............................
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | 
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | job summary report
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | --------------------------------------------------
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | PanDA job id: 7056976671
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | task id: 49181660
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | errors: (none)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | pilot state: finished 
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | transexitcode: 0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | exeerrorcode: 0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | exeerrordiag: 
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | exitcode: 0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,626 | INFO     | exitmsg: OK
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | cpuconsumptiontime: 56011 s
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | nevents: 400
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | neventsw: 0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | pid: 25202
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | pgrp: 25202
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | corecount: 8
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | event service: False
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | sizes: {0: 2280430, 11: 2280430, 7601: 2308209, 7602: 2317237, 7604: 2317293, 7605: 2317487}
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | --------------------------------------------------
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | 
[2026-03-25 06:48:44] 2026-03-25 05:48:12,627 | INFO     | executing command: ls -lF /tmp/job_11389808/atlas/pilot/slots/0
[2026-03-25 06:48:44] 2026-03-25 05:48:12,636 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | job 7056976671 has completed (purged errors)
[2026-03-25 06:48:44] 2026-03-25 05:48:12,637 | INFO     | overall cleanup function is called
[2026-03-25 06:48:44] 2026-03-25 05:48:13,639 | INFO     | --- collectZombieJob: --- 10, [25202]
[2026-03-25 06:48:44] 2026-03-25 05:48:13,639 | INFO     | zombie collector waiting for pid 25202
[2026-03-25 06:48:44] 2026-03-25 05:48:13,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 06:48:44] 2026-03-25 05:48:13,639 | INFO     | collected zombie processes
[2026-03-25 06:48:44] 2026-03-25 05:48:13,639 | INFO     | will attempt to kill all subprocesses of pid=25202
[2026-03-25 06:48:44] 2026-03-25 05:48:13,732 | INFO     | process IDs to be killed: [25202] (in reverse order)
[2026-03-25 06:48:44] 2026-03-25 05:48:13,766 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 06:48:44] 2026-03-25 05:48:13,766 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 06:48:44] 2026-03-25 05:48:13,770 | INFO     | did not find any defunct processes belonging to 25202
[2026-03-25 06:48:44] 2026-03-25 05:48:13,773 | INFO     | did not find any defunct processes belonging to 25202
[2026-03-25 06:48:44] 2026-03-25 05:48:13,773 | INFO     | ready for new job
[2026-03-25 06:48:44] 2026-03-25 05:48:13,773 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 06:48:44] 2026-03-25 05:48:13,774 | INFO     | **************************************
[2026-03-25 06:48:44] 2026-03-25 05:48:13,774 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 06:48:44] 2026-03-25 05:48:13,774 | INFO     | **************************************
[2026-03-25 06:48:44] 2026-03-25 05:48:13,774 | INFO     | 
[2026-03-25 06:48:44] 2026-03-25 05:48:13,787 | INFO     | architecture information:
[2026-03-25 06:48:44] 2026-03-25 05:48:13,787 | INFO     | executing command: cat /etc/os-release
[2026-03-25 06:48:44] 2026-03-25 05:48:13,794 | INFO     | cat /etc/os-release:
[2026-03-25 06:48:44] NAME="CentOS Linux"
[2026-03-25 06:48:44] VERSION="7 (Core)"
[2026-03-25 06:48:44] ID="centos"
[2026-03-25 06:48:44] ID_LIKE="rhel fedora"
[2026-03-25 06:48:44] VERSION_ID="7"
[2026-03-25 06:48:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 06:48:44] ANSI_COLOR="0;31"
[2026-03-25 06:48:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 06:48:44] HOME_URL="https://www.centos.org/"
[2026-03-25 06:48:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 06:48:44] 
[2026-03-25 06:48:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 06:48:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 06:48:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 06:48:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 06:48:44] 
[2026-03-25 06:48:44] 2026-03-25 05:48:13,794 | INFO     | **************************************
[2026-03-25 06:48:44] 2026-03-25 05:48:14,297 | INFO     | executing command: df -mP /tmp/job_11389808/atlas/pilot/slots/0
[2026-03-25 06:48:44] 2026-03-25 05:48:14,303 | INFO     | sufficient remaining disk space (226508144640 B)
[2026-03-25 06:48:44] 2026-03-25 05:48:14,304 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 06:48:44] 2026-03-25 05:48:14,304 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 06:48:44] 2026-03-25 05:48:14,304 | INFO     | update_server=False
[2026-03-25 06:48:44] 2026-03-25 05:48:14,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 06:48:44] 2026-03-25 05:48:14,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 06:48:44] 2026-03-25 05:48:14,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 06:48:44] 2026-03-25 05:48:14,364 | INFO     | aborting loop
[2026-03-25 06:48:44] 2026-03-25 05:48:15,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 06:48:44] 2026-03-25 05:48:15,064 | INFO     | all data control threads have been joined
[2026-03-25 06:48:44] 2026-03-25 05:48:15,176 | INFO     | all payload control threads have been joined
[2026-03-25 06:48:44] 2026-03-25 05:48:15,309 | INFO     | [job] retrieve thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:15,309 | INFO     | [job] queue monitor thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:15,370 | INFO     | [job] job monitor thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:15,431 | INFO     | [data] copytool_in thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:15,655 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:15,948 | INFO     | all job control threads have been joined
[2026-03-25 06:48:44] 2026-03-25 05:48:16,069 | INFO     | [data] control thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:16,181 | INFO     | [payload] control thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:16,224 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:16,498 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:16,507 | INFO     | [payload] validate_post thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:16,559 | INFO     | [job] validate thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:16,609 | INFO     | [payload] failed_post thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:16,785 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:16,953 | INFO     | [job] control thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:17,066 | INFO     | [data] copytool_out thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:17,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 06:48:44] 2026-03-25 05:48:21,693 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 06:48:44] 2026-03-25 05:48:28,449 | INFO     | [monitor] cgroup control has ended
[2026-03-25 06:48:44] 2026-03-25 05:48:30,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-25 06:48:44] 2026-03-25 05:48:35,166 | INFO     | all workflow threads have been joined
[2026-03-25 06:48:44] 2026-03-25 05:48:35,166 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 06:48:44] 2026-03-25 05:48:35,166 | INFO     | traces error code: 0
[2026-03-25 06:48:44] 2026-03-25 05:48:35,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 06:48:44] 2026-03-25 05:48:44,007 | INFO     | PID=20478 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-25 06:48:44] 2026-03-25 05:48:44,007 | INFO     | .. there are 3 such processes running
[2026-03-25 06:48:44] 2026-03-25 05:48:44,007 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 06:48:44] 2026-03-25 05:48:44,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 06:48:44] 2026-03-25 05:48:44,007 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 06:48:44] 2026-03-25 05:48:44,007 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 06:48:44] 2026-03-25 05:48:44,007 | INFO     | [monitor] control thread has ended
[2026-03-25 06:48:44] 2026-03-25 05:48:44,059 [wrapper] ==== pilot stdout END ====
[2026-03-25 06:48:44] 2026-03-25 05:48:44,061 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 06:48:44] 2026-03-25 05:48:44,062 [wrapper] pilotpid: 20478
[2026-03-25 06:48:44] 2026-03-25 05:48:44,063 [wrapper] Pilot exit status: 0
[2026-03-25 06:48:44] 2026-03-25 05:48:44,067 [wrapper] pandaids: 7056976671
[2026-03-25 06:48:44] 2026-03-25 05:48:44,089 [wrapper] cleanup supervisor_pilot 17214 20479
[2026-03-25 06:48:44] 2026-03-25 05:48:44,090 [wrapper] Test setup, not cleaning
[2026-03-25 06:48:44] 2026-03-25 05:48:44,091 [wrapper] apfmon messages muted
[2026-03-25 06:48:44] 2026-03-25 05:48:44,092 [wrapper] ==== wrapper stdout END ====
[2026-03-25 06:48:44] 2026-03-25 05:48:44,094 [wrapper] ==== wrapper stderr END ====
[2026-03-25 06:48:44]  *** Error codes and diagnostics ***
[2026-03-25 06:48:44]     "exeErrorCode": 0,
[2026-03-25 06:48:44]     "exeErrorDiag": "",
[2026-03-25 06:48:44]     "pilotErrorCode": 0,
[2026-03-25 06:48:44]     "pilotErrorDiag": "",
[2026-03-25 06:48:44]  *** Listing of results directory ***
[2026-03-25 06:48:44] total 476628
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user    585013 Mar 16 18:24 pilot3.tar.gz
[2026-03-25 06:48:44] -rwx------ 1 mf493845 unix-user     36322 Mar 16 18:27 runpilot2-wrapper.sh
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user      5111 Mar 16 18:30 queuedata.json
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user       100 Mar 25 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 06:48:44] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 25 03:39 run_atlas
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user       105 Mar 25 03:39 job.xml
[2026-03-25 06:48:44] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 04:41 start_atlas.sh
[2026-03-25 06:48:44] drwxrwx--x 2 mf493845 unix-user       100 Mar 25 04:41 shared
[2026-03-25 06:48:44] -rw-r--r-- 2 mf493845 unix-user    597549 Mar 25 04:41 input.tar.gz
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user      6389 Mar 25 04:41 init_data.xml
[2026-03-25 06:48:44] -rw-r--r-- 2 mf493845 unix-user 243129267 Mar 25 04:41 EVNT.49135495._000016.pool.root.1
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user         0 Mar 25 04:41 boinc_setup_complete
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user      8192 Mar 25 04:41 boinc_mmap_file
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user         0 Mar 25 04:41 boinc_lockfile
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user      2618 Mar 25 04:41 pandaJob.out
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user   1010836 Mar 25 04:41 agis_schedconf.cvmfs.json
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user   1511579 Mar 25 04:41 agis_ddmendpoints.agis.ALL.json
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user       420 Mar 25 04:41 workernode_map.json
[2026-03-25 06:48:44] drwx------ 5 mf493845 unix-user       440 Mar 25 04:41 pilot3
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user 238035485 Mar 25 06:47 HITS.49181660._000392.pool.root.1
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user        95 Mar 25 06:48 pilot_heartbeat.json
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user      1016 Mar 25 06:48 memory_monitor_summary.json
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user    372061 Mar 25 06:48 log.49181660._000392.job.log.tgz.1
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user      6301 Mar 25 06:48 heartbeat.json
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user       820 Mar 25 06:48 pilotlog.txt
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user   1122354 Mar 25 06:48 log.49181660._000392.job.log.1
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user       357 Mar 25 06:48 output.list
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user       620 Mar 25 06:48 runtime_log
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user   1515520 Mar 25 06:48 result.tar.gz
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user       643 Mar 25 06:48 Y3wNDmbuQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQivLDm7Txdyn.diag
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user      9219 Mar 25 06:48 runtime_log.err
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user     21502 Mar 25 06:48 stderr.txt
[2026-03-25 06:48:44] HITS file was successfully produced:
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user 238035485 Mar 25 06:47 shared/HITS.pool.root.1
[2026-03-25 06:48:44]  *** Contents of shared directory: ***
[2026-03-25 06:48:44] total 471972
[2026-03-25 06:48:44] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 04:41 start_atlas.sh
[2026-03-25 06:48:44] -rw-r--r-- 2 mf493845 unix-user    597549 Mar 25 04:41 input.tar.gz
[2026-03-25 06:48:44] -rw-r--r-- 2 mf493845 unix-user 243129267 Mar 25 04:41 ATLAS.root_0
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user 238035485 Mar 25 06:47 HITS.pool.root.1
[2026-03-25 06:48:44] -rw------- 1 mf493845 unix-user   1515520 Mar 25 06:48 result.tar.gz
06:48:46 (16619): run_atlas exited; CPU time 56135.134242
06:48:46 (16619): called boinc_finish(0)

</stderr_txt>
]]>

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