Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:28:41 (21693): wrapper (7.7.26015): starting
04:28:41 (21693): wrapper: running run_atlas (--nthreads 8)
[2026-03-25 04:28:41] Arguments: --nthreads 8
[2026-03-25 04:28:41] Threads: 8
[2026-03-25 04:28:41] Checking for CVMFS
[2026-03-25 04:28:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 04:28:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 04:28:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 04:28:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 04:28:41] 2.11.0.0 6818 35976 79268 157668 0 228 3606509 4096000 3610 130560 1 7397053 99.828 2191715 272 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-25 04:28:41] CVMFS is ok
[2026-03-25 04:28:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 04:28:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 04:28:41] Further information can be found at the LHC@home message board.
[2026-03-25 04:28:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 04:28:41] Checking for apptainer binary...
[2026-03-25 04:28:41] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-25 04:28:41] apptainer is not installed, using version from CVMFS
[2026-03-25 04:28:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 04:28:41] WARNING: Environment variable TMPDIR already has value [/tmp/job_11389633/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node179
[2026-03-25 04:28:41] apptainer works
[2026-03-25 04:28:41] Set ATHENA_PROC_NUMBER=8
[2026-03-25 04:28:41] Set ATHENA_CORE_NUMBER=8
[2026-03-25 04:28:41] Starting ATLAS job with PandaID=7058446403
[2026-03-25 04:28:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11389633/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 06:32:17]  *** The last 200 lines of the pilot log: ***
[2026-03-25 06:32:17] 2026-03-25 05:31:45,737 | INFO     | extracted standard info from prmon json
[2026-03-25 06:32:17] 2026-03-25 05:31:45,737 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 06:32:17] 2026-03-25 05:31:45,738 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 06:32:17] 2026-03-25 05:31:45,738 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 06:32:17] 2026-03-25 05:31:45,738 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 06:32:17] 2026-03-25 05:31:45,739 | INFO     | fitting pss+swap vs Time
[2026-03-25 06:32:17] 2026-03-25 05:31:45,739 | INFO     | sum of square deviations: 549294020.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,739 | INFO     | sum of deviations: 11904680883.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,739 | INFO     | mean x: 1774413006.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,739 | INFO     | mean y: 2515252.9008264462
[2026-03-25 06:32:17] 2026-03-25 05:31:45,739 | INFO     | intersect: -38453793794.619415
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | chi2: 1.1449867244308434
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | sum of square deviations: 483971865.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | sum of deviations: 11268112241.500002
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | mean x: 1774412853.5
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | mean y: 2513765.6810344825
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | intersect: -41310390231.32775
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | chi2: 1.1464964670458697
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | current chi2=1.1464964670458697 (change=-0.13185677901871004 %)
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | right removable region: 115
[2026-03-25 06:32:17] 2026-03-25 05:31:45,740 | INFO     | sum of square deviations: 483971865.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | sum of deviations: -2315593763.5000005
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | mean x: 1774413158.5
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | mean y: 2547718.9051724137
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | intersect: 8492338842.80643
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | chi2: 0.007085411850883061
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | current chi2=0.007085411850883061 (change=99.38117956307266 %)
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | sum of square deviations: 424045160.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | sum of deviations: -2871204486.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | mean x: 1774413311.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | mean y: 2549113.954954955
[2026-03-25 06:32:17] 2026-03-25 05:31:45,741 | INFO     | intersect: 12017079496.901226
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | chi2: 0.004783489942841552
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | current chi2=0.004783489942841552 (change=32.48818779327017 %)
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | sum of square deviations: 369281342.5
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | sum of deviations: -2721946971.5
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | mean x: 1774413463.5
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | mean y: 2548694.5566037735
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | intersect: 13081626344.309925
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | chi2: 0.004618899411452985
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | current chi2=0.004618899411452985 (change=3.4408043782944695 %)
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | left removable region: 30
[2026-03-25 06:32:17] 2026-03-25 05:31:45,742 | INFO     | sum of square deviations: 190403570.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | sum of deviations: -1672309815.0000002
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | mean x: 1774413738.0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | mean y: 2544472.6705882354
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | intersect: 15587176157.508425
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | chi2: 0.003849963026340293
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | current memory leak: -8.78 B/s (using 85 data points, chi2=0.00)
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | could have reported an average CPU frequency of 2518 MHz (8 samples)
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | ..............................
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | . Timing measurements:
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | . get job = 0 s
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | . initial setup = 2 s
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | . payload setup = 3 s
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | . stage-in = 0 s
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | . payload execution = 7355 s
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | . stage-out = 0 s
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | . log creation = 0 s
[2026-03-25 06:32:17] 2026-03-25 05:31:45,743 | INFO     | ..............................
[2026-03-25 06:32:17] 2026-03-25 05:31:45,790 | INFO     | 
[2026-03-25 06:32:17] 2026-03-25 05:31:45,790 | INFO     | job summary report
[2026-03-25 06:32:17] 2026-03-25 05:31:45,790 | INFO     | --------------------------------------------------
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | PanDA job id: 7058446403
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | task id: 49176089
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | errors: (none)
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | pilot state: finished 
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | transexitcode: 0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | exeerrorcode: 0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | exeerrordiag: 
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | exitcode: 0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | exitmsg: OK
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | cpuconsumptiontime: 54637 s
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | nevents: 400
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | neventsw: 0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | pid: 32343
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | pgrp: 32343
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | corecount: 8
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | event service: False
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | sizes: {0: 2280434, 11: 2280434, 7363: 2308002, 7364: 2317030, 7366: 2317280}
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | --------------------------------------------------
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | 
[2026-03-25 06:32:17] 2026-03-25 05:31:45,791 | INFO     | executing command: ls -lF /tmp/job_11389633/atlas/pilot/slots/0
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,801 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 06:32:17] 2026-03-25 05:31:45,802 | INFO     | job 7058446403 has completed (purged errors)
[2026-03-25 06:32:17] 2026-03-25 05:31:45,802 | INFO     | overall cleanup function is called
[2026-03-25 06:32:17] 2026-03-25 05:31:46,807 | INFO     | --- collectZombieJob: --- 10, [32343]
[2026-03-25 06:32:17] 2026-03-25 05:31:46,808 | INFO     | zombie collector waiting for pid 32343
[2026-03-25 06:32:17] 2026-03-25 05:31:46,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 06:32:17] 2026-03-25 05:31:46,808 | INFO     | collected zombie processes
[2026-03-25 06:32:17] 2026-03-25 05:31:46,808 | INFO     | will attempt to kill all subprocesses of pid=32343
[2026-03-25 06:32:17] 2026-03-25 05:31:46,897 | INFO     | process IDs to be killed: [32343] (in reverse order)
[2026-03-25 06:32:17] 2026-03-25 05:31:46,929 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 06:32:17] 2026-03-25 05:31:46,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 06:32:17] 2026-03-25 05:31:46,936 | INFO     | did not find any defunct processes belonging to 32343
[2026-03-25 06:32:17] 2026-03-25 05:31:46,942 | INFO     | did not find any defunct processes belonging to 32343
[2026-03-25 06:32:17] 2026-03-25 05:31:46,942 | INFO     | ready for new job
[2026-03-25 06:32:17] 2026-03-25 05:31:46,942 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 06:32:17] 2026-03-25 05:31:46,943 | INFO     | **************************************
[2026-03-25 06:32:17] 2026-03-25 05:31:46,943 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 06:32:17] 2026-03-25 05:31:46,943 | INFO     | **************************************
[2026-03-25 06:32:17] 2026-03-25 05:31:46,943 | INFO     | 
[2026-03-25 06:32:17] 2026-03-25 05:31:46,956 | INFO     | architecture information:
[2026-03-25 06:32:17] 2026-03-25 05:31:46,957 | INFO     | executing command: cat /etc/os-release
[2026-03-25 06:32:17] 2026-03-25 05:31:46,963 | INFO     | cat /etc/os-release:
[2026-03-25 06:32:17] NAME="CentOS Linux"
[2026-03-25 06:32:17] VERSION="7 (Core)"
[2026-03-25 06:32:17] ID="centos"
[2026-03-25 06:32:17] ID_LIKE="rhel fedora"
[2026-03-25 06:32:17] VERSION_ID="7"
[2026-03-25 06:32:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 06:32:17] ANSI_COLOR="0;31"
[2026-03-25 06:32:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 06:32:17] HOME_URL="https://www.centos.org/"
[2026-03-25 06:32:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 06:32:17] 
[2026-03-25 06:32:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 06:32:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 06:32:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 06:32:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 06:32:17] 
[2026-03-25 06:32:17] 2026-03-25 05:31:46,963 | INFO     | **************************************
[2026-03-25 06:32:17] 2026-03-25 05:31:47,012 | WARNING  | process 32343 can no longer be monitored (due to stat problems) - aborting
[2026-03-25 06:32:17] 2026-03-25 05:31:47,084 | INFO     | using path: /tmp/job_11389633/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 06:32:17] 2026-03-25 05:31:47,168 | INFO     | number of running child processes to parent process 32343: 1
[2026-03-25 06:32:17] 2026-03-25 05:31:47,168 | INFO     | maximum number of monitored processes: 6
[2026-03-25 06:32:17] 2026-03-25 05:31:47,168 | INFO     | aborting job monitoring since job object (job id=7058446403) has expired
[2026-03-25 06:32:17] 2026-03-25 05:31:47,466 | INFO     | executing command: df -mP /tmp/job_11389633/atlas/pilot/slots/0
[2026-03-25 06:32:17] 2026-03-25 05:31:47,473 | INFO     | sufficient remaining disk space (226463055872 B)
[2026-03-25 06:32:17] 2026-03-25 05:31:47,473 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 06:32:17] 2026-03-25 05:31:47,473 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 06:32:17] 2026-03-25 05:31:47,473 | INFO     | update_server=False
[2026-03-25 06:32:17] 2026-03-25 05:31:47,473 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 06:32:17] 2026-03-25 05:31:47,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 06:32:17] 2026-03-25 05:31:47,473 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 06:32:17] 2026-03-25 05:31:47,473 | INFO     | will abort loop
[2026-03-25 06:32:17] 2026-03-25 05:31:47,473 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 06:32:17] 2026-03-25 05:31:47,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 06:32:17] 2026-03-25 05:31:47,768 | INFO     | all data control threads have been joined
[2026-03-25 06:32:17] 2026-03-25 05:31:48,029 | INFO     | all job control threads have been joined
[2026-03-25 06:32:17] 2026-03-25 05:31:48,211 | INFO     | all payload control threads have been joined
[2026-03-25 06:32:17] 2026-03-25 05:31:48,478 | INFO     | [job] retrieve thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:48,478 | INFO     | [job] job monitor thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:48,479 | INFO     | [job] queue monitor thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:48,539 | INFO     | [payload] failed_post thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:48,745 | INFO     | [payload] validate_post thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:48,773 | INFO     | [data] control thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:49,035 | INFO     | [job] control thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:49,059 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:49,070 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:49,162 | INFO     | [data] copytool_in thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:49,216 | INFO     | [payload] control thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:49,341 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:49,478 | INFO     | [data] copytool_out thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:49,796 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:49,939 | INFO     | [job] validate thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:31:51,479 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 06:32:17] 2026-03-25 05:32:00,349 | INFO     | [monitor] cgroup control has ended
[2026-03-25 06:32:17] 2026-03-25 05:32:01,974 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-03-25 06:32:17] 2026-03-25 05:32:06,999 | INFO     | all workflow threads have been joined
[2026-03-25 06:32:17] 2026-03-25 05:32:06,999 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 06:32:17] 2026-03-25 05:32:06,999 | INFO     | traces error code: 0
[2026-03-25 06:32:17] 2026-03-25 05:32:06,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 06:32:17] 2026-03-25 05:32:17,653 | INFO     | PID=26584 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-25 06:32:17] 2026-03-25 05:32:17,654 | INFO     | .. there are 2 such processes running
[2026-03-25 06:32:17] 2026-03-25 05:32:17,654 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 06:32:17] 2026-03-25 05:32:17,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 06:32:17] 2026-03-25 05:32:17,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 06:32:17] 2026-03-25 05:32:17,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 06:32:17] 2026-03-25 05:32:17,654 | INFO     | [monitor] control thread has ended
[2026-03-25 06:32:17] 2026-03-25 05:32:17,704 [wrapper] ==== pilot stdout END ====
[2026-03-25 06:32:17] 2026-03-25 05:32:17,705 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 06:32:17] 2026-03-25 05:32:17,706 [wrapper] pilotpid: 26584
[2026-03-25 06:32:17] 2026-03-25 05:32:17,708 [wrapper] Pilot exit status: 0
[2026-03-25 06:32:17] 2026-03-25 05:32:17,712 [wrapper] pandaids: 7058446403
[2026-03-25 06:32:17] 2026-03-25 05:32:17,731 [wrapper] cleanup supervisor_pilot 21143 26586
[2026-03-25 06:32:17] 2026-03-25 05:32:17,733 [wrapper] Test setup, not cleaning
[2026-03-25 06:32:17] 2026-03-25 05:32:17,734 [wrapper] apfmon messages muted
[2026-03-25 06:32:17] 2026-03-25 05:32:17,735 [wrapper] ==== wrapper stdout END ====
[2026-03-25 06:32:17] 2026-03-25 05:32:17,736 [wrapper] ==== wrapper stderr END ====
[2026-03-25 06:32:17]  *** Error codes and diagnostics ***
[2026-03-25 06:32:17]     "exeErrorCode": 0,
[2026-03-25 06:32:17]     "exeErrorDiag": "",
[2026-03-25 06:32:17]     "pilotErrorCode": 0,
[2026-03-25 06:32:17]     "pilotErrorDiag": "",
[2026-03-25 06:32:17]  *** Listing of results directory ***
[2026-03-25 06:32:17] total 467972
[2026-03-25 06:32:17] -rwx------ 1 mf493845 unix-user     36322 Mar 22 05:28 runpilot2-wrapper.sh
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user    585013 Mar 23 23:57 pilot3.tar.gz
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user      5111 Mar 24 00:02 queuedata.json
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user       100 Mar 25 03:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 06:32:17] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 25 03:27 run_atlas
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user       105 Mar 25 03:27 job.xml
[2026-03-25 06:32:17] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 04:28 start_atlas.sh
[2026-03-25 06:32:17] drwxrwx--x 2 mf493845 unix-user       100 Mar 25 04:28 shared
[2026-03-25 06:32:17] -rw-r--r-- 2 mf493845 unix-user    597547 Mar 25 04:28 input.tar.gz
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user      6390 Mar 25 04:28 init_data.xml
[2026-03-25 06:32:17] -rw-r--r-- 2 mf493845 unix-user 241415281 Mar 25 04:28 EVNT.49132503._000006.pool.root.1
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user         0 Mar 25 04:28 boinc_setup_complete
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user      8192 Mar 25 04:28 boinc_mmap_file
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user         0 Mar 25 04:28 boinc_lockfile
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user      2619 Mar 25 04:28 pandaJob.out
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user   1010836 Mar 25 04:28 agis_schedconf.cvmfs.json
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user   1511579 Mar 25 04:28 agis_ddmendpoints.agis.ALL.json
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user       412 Mar 25 04:28 workernode_map.json
[2026-03-25 06:32:17] drwx------ 5 mf493845 unix-user       440 Mar 25 04:28 pilot3
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user 230963990 Mar 25 06:31 HITS.49176089._000142.pool.root.1
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user        95 Mar 25 06:31 pilot_heartbeat.json
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user      1017 Mar 25 06:31 memory_monitor_summary.json
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user    370618 Mar 25 06:31 log.49176089._000142.job.log.tgz.1
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user      6294 Mar 25 06:31 heartbeat.json
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user       820 Mar 25 06:32 pilotlog.txt
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user   1087701 Mar 25 06:32 log.49176089._000142.job.log.1
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user       357 Mar 25 06:32 output.list
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user       620 Mar 25 06:32 runtime_log
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user   1474560 Mar 25 06:32 result.tar.gz
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user      9219 Mar 25 06:32 runtime_log.err
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user       643 Mar 25 06:32 dgOLDmTbPO9n9Rq4apOajLDm4fhM0noT9bVooX4SDmtT0LDmdfeAgm.diag
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user     21515 Mar 25 06:32 stderr.txt
[2026-03-25 06:32:17] HITS file was successfully produced:
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user 230963990 Mar 25 06:31 shared/HITS.pool.root.1
[2026-03-25 06:32:17]  *** Contents of shared directory: ***
[2026-03-25 06:32:17] total 463352
[2026-03-25 06:32:17] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 04:28 start_atlas.sh
[2026-03-25 06:32:17] -rw-r--r-- 2 mf493845 unix-user    597547 Mar 25 04:28 input.tar.gz
[2026-03-25 06:32:17] -rw-r--r-- 2 mf493845 unix-user 241415281 Mar 25 04:28 ATLAS.root_0
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user 230963990 Mar 25 06:31 HITS.pool.root.1
[2026-03-25 06:32:17] -rw------- 1 mf493845 unix-user   1474560 Mar 25 06:32 result.tar.gz
06:32:19 (21693): run_atlas exited; CPU time 54750.905665
06:32:19 (21693): called boinc_finish(0)

</stderr_txt>
]]>

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