Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:53:48 (579841): wrapper (7.7.26015): starting
01:53:48 (579841): wrapper: running run_atlas (--nthreads 3)
[2026-03-26 01:53:48] Arguments: --nthreads 3
[2026-03-26 01:53:48] Threads: 3
[2026-03-26 01:53:48] Checking for CVMFS
[2026-03-26 01:53:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 01:53:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 01:53:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 01:53:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 01:53:50] 2.9.2.0 179687 4701 84636 157702 3 50 32959575 36864001 0 130560 0 1501381 99.978 165049 12914 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-26 01:53:50] CVMFS is ok
[2026-03-26 01:53:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 01:53:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 01:53:50] Further information can be found at the LHC@home message board.
[2026-03-26 01:53:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 01:53:50] Checking for apptainer binary...
[2026-03-26 01:53:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 01:53:50] Running /usr/bin/apptainer --version
[2026-03-26 01:53:50] apptainer version 1.4.1-1.1
[2026-03-26 01:53:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 01:53:50] magicA161
[2026-03-26 01:53:50] apptainer works
[2026-03-26 01:53:50] Set ATHENA_PROC_NUMBER=3
[2026-03-26 01:53:50] Set ATHENA_CORE_NUMBER=3
[2026-03-26 01:53:50] Starting ATLAS job with PandaID=7056977221
[2026-03-26 01:53:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 05:22:25]  *** The last 200 lines of the pilot log: ***
[2026-03-26 05:22:25] 2026-03-26 04:21:43,553 | INFO     | [job] retrieve thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:43,693 | INFO     | all payload control threads have been joined
[2026-03-26 05:22:25] 2026-03-26 04:21:44,023 | INFO     | all job control threads have been joined
[2026-03-26 05:22:25] 2026-03-26 04:21:44,193 | INFO     | [payload] failed_post thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:44,520 | INFO     | [data] control thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:44,546 | INFO     | job.realtimelogging is not enabled
[2026-03-26 05:22:25] 2026-03-26 04:21:44,699 | INFO     | [payload] control thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:44,736 | INFO     | [job] validate thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:44,750 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:44,808 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:44,821 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:44,938 | INFO     | [data] copytool_in thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:45,029 | INFO     | [job] control thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:45,079 | INFO     | [payload] validate_post thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:45,155 | INFO     | [data] copytool_out thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:45,549 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:45,949 | WARNING  | process 588328 can no longer be monitored (due to stat problems) - aborting
[2026-03-26 05:22:25] 2026-03-26 04:21:45,977 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-26 05:22:25] 2026-03-26 04:21:46,011 | INFO     | number of running child processes to parent process 588328: 1
[2026-03-26 05:22:25] 2026-03-26 04:21:46,011 | INFO     | maximum number of monitored processes: 6
[2026-03-26 05:22:25] 2026-03-26 04:21:46,011 | INFO     | aborting job monitoring since job object (job id=7056977221) has expired
[2026-03-26 05:22:25] 2026-03-26 04:21:46,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 05:22:25] 2026-03-26 04:21:46,012 | INFO     | will abort loop
[2026-03-26 05:22:25] 2026-03-26 04:21:46,554 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:21:47,017 | INFO     | [job] job monitor thread has finished
[2026-03-26 05:22:25] 2026-03-26 04:22:12,972 | INFO     | PID=583895 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-26 05:22:25] 2026-03-26 04:22:12,973 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 05:22:25] 2026-03-26 04:22:12,973 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 05:22:25] 2026-03-26 04:22:12,973 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 05:22:25] 2026-03-26 04:22:18,323 | INFO     | [monitor] cgroup control has ended
[2026-03-26 05:22:25] 2026-03-26 04:22:20,365 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140030148515648)>', '<ExcThread(monitor, started 140029775025920)>']
[2026-03-26 05:22:25] 2026-03-26 04:22:21,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 05:22:25] 2026-03-26 04:22:21,016 | INFO     | [monitor] control thread has ended
[2026-03-26 05:22:25] 2026-03-26 04:22:25,391 | INFO     | all workflow threads have been joined
[2026-03-26 05:22:25] 2026-03-26 04:22:25,391 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 05:22:25] 2026-03-26 04:22:25,391 | INFO     | traces error code: 0
[2026-03-26 05:22:25] 2026-03-26 04:22:25,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 05:22:25] 2026-03-26 04:22:25,440 [wrapper] ==== pilot stdout END ====
[2026-03-26 05:22:25] 2026-03-26 04:22:25,442 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 05:22:25] 2026-03-26 04:22:25,445 [wrapper] pilotpid: 583895
[2026-03-26 05:22:25] 2026-03-26 04:22:25,447 [wrapper] Pilot exit status: 0
[2026-03-26 05:22:25] 2026-03-26 04:22:25,455 [wrapper] pandaids: 7056977221
[2026-03-26 05:22:25] 2026-03-26 04:22:25,472 [wrapper] cleanup supervisor_pilot  595076 583896
[2026-03-26 05:22:25] 2026-03-26 04:22:25,474 [wrapper] Test setup, not cleaning
[2026-03-26 05:22:25] 2026-03-26 04:22:25,477 [wrapper] apfmon messages muted
[2026-03-26 05:22:25] 2026-03-26 04:22:25,479 [wrapper] ==== wrapper stdout END ====
[2026-03-26 05:22:25] 2026-03-26 04:22:25,482 [wrapper] ==== wrapper stderr END ====
[2026-03-26 05:22:25]  *** Error codes and diagnostics ***
[2026-03-26 05:22:25]     "exeErrorCode": 0,
[2026-03-26 05:22:25]     "exeErrorDiag": "",
[2026-03-26 05:22:25]     "pilotErrorCode": 0,
[2026-03-26 05:22:25]     "pilotErrorDiag": "",
[2026-03-26 05:22:25]  *** Listing of results directory ***
[2026-03-26 05:22:25] total 484216
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc    585013 Mar 16 18:24 pilot3.tar.gz
[2026-03-26 05:22:25] -rwx------ 1 boinc boinc     36322 Mar 16 18:27 runpilot2-wrapper.sh
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc      5111 Mar 16 18:30 queuedata.json
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc       100 Mar 26 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 05:22:25] -rwxr-xr-x 1 boinc boinc      7986 Mar 26 01:53 run_atlas
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc       105 Mar 26 01:53 job.xml
[2026-03-26 05:22:25] -rw-r--r-- 2 boinc boinc 245337218 Mar 26 01:53 EVNT.49135495._000029.pool.root.1
[2026-03-26 05:22:25] -rw-r--r-- 2 boinc boinc    597548 Mar 26 01:53 input.tar.gz
[2026-03-26 05:22:25] -rw-r--r-- 2 boinc boinc     15845 Mar 26 01:53 start_atlas.sh
[2026-03-26 05:22:25] drwxrwx--x 2 boinc boinc      4096 Mar 26 01:53 shared
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc         0 Mar 26 01:53 boinc_setup_complete
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc      6448 Mar 26 01:53 init_data.xml
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc         0 Mar 26 01:53 boinc_lockfile
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc      2618 Mar 26 01:53 pandaJob.out
[2026-03-26 05:22:25] -rw------- 1 boinc boinc   1012171 Mar 26 01:53 agis_schedconf.cvmfs.json
[2026-03-26 05:22:25] -rw------- 1 boinc boinc       426 Mar 26 01:54 workernode_map.json
[2026-03-26 05:22:25] drwx------ 5 boinc boinc      4096 Mar 26 01:54 pilot3
[2026-03-26 05:22:25] -rw------- 1 boinc boinc 242310581 Mar 26 05:21 HITS.49181660._000725.pool.root.1
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc       531 Mar 26 05:21 boinc_task_state.xml
[2026-03-26 05:22:25] -rw------- 1 boinc boinc      1015 Mar 26 05:21 memory_monitor_summary.json
[2026-03-26 05:22:25] -rw------- 1 boinc boinc   1511579 Mar 26 05:21 agis_ddmendpoints.agis.ALL.json
[2026-03-26 05:22:25] -rw------- 1 boinc boinc    374043 Mar 26 05:21 log.49181660._000725.job.log.tgz.1
[2026-03-26 05:22:25] -rw------- 1 boinc boinc      6299 Mar 26 05:21 heartbeat.json
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc      8192 Mar 26 05:21 boinc_mmap_file
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc        28 Mar 26 05:21 wrapper_checkpoint.txt
[2026-03-26 05:22:25] -rw------- 1 boinc boinc        95 Mar 26 05:22 pilot_heartbeat.json
[2026-03-26 05:22:25] -rw------- 1 boinc boinc      5341 Mar 26 05:22 pilotlog.txt
[2026-03-26 05:22:25] -rw------- 1 boinc boinc   1756709 Mar 26 05:22 log.49181660._000725.job.log.1
[2026-03-26 05:22:25] -rw------- 1 boinc boinc       357 Mar 26 05:22 output.list
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc       620 Mar 26 05:22 runtime_log
[2026-03-26 05:22:25] -rw------- 1 boinc boinc   2150400 Mar 26 05:22 result.tar.gz
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc      8912 Mar 26 05:22 runtime_log.err
[2026-03-26 05:22:25] -rw------- 1 boinc boinc       663 Mar 26 05:22 e43LDmcuQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmpjvLDmt6DY9n.diag
[2026-03-26 05:22:25] -rw-r--r-- 1 boinc boinc      7329 Mar 26 05:22 stderr.txt
[2026-03-26 05:22:25] HITS file was successfully produced:
[2026-03-26 05:22:25] -rw------- 1 boinc boinc 242310581 Mar 26 05:21 shared/HITS.pool.root.1
[2026-03-26 05:22:25]  *** Contents of shared directory: ***
[2026-03-26 05:22:25] total 478928
[2026-03-26 05:22:25] -rw-r--r-- 2 boinc boinc 245337218 Mar 26 01:53 ATLAS.root_0
[2026-03-26 05:22:25] -rw-r--r-- 2 boinc boinc    597548 Mar 26 01:53 input.tar.gz
[2026-03-26 05:22:25] -rw-r--r-- 2 boinc boinc     15845 Mar 26 01:53 start_atlas.sh
[2026-03-26 05:22:25] -rw------- 1 boinc boinc 242310581 Mar 26 05:21 HITS.pool.root.1
[2026-03-26 05:22:25] -rw------- 1 boinc boinc   2150400 Mar 26 05:22 result.tar.gz
05:22:27 (579841): run_atlas exited; CPU time 36357.089955
05:22:27 (579841): called boinc_finish(0)

</stderr_txt>
]]>

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