Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:06:13 (3104674): wrapper (7.7.26015): starting
21:06:13 (3104674): wrapper: running run_atlas (--nthreads 2)
[2026-03-25 21:06:13] Arguments: --nthreads 2
[2026-03-25 21:06:13] Threads: 2
[2026-03-25 21:06:13] Checking for CVMFS
[2026-03-25 21:06:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 21:06:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 21:06:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 21:06:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 21:06:14] 2.9.2.0 2868420 4482 59372 157694 0 50 18641196 36864001 0 130560 0 929375 99.970 148246 14756 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-25 21:06:14] CVMFS is ok
[2026-03-25 21:06:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 21:06:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 21:06:14] Further information can be found at the LHC@home message board.
[2026-03-25 21:06:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 21:06:14] Checking for apptainer binary...
[2026-03-25 21:06:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 21:06:14] Running /usr/bin/apptainer --version
[2026-03-25 21:06:14] apptainer version 1.4.1-1.1
[2026-03-25 21:06:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 21:06:14] magicA244
[2026-03-25 21:06:14] apptainer works
[2026-03-25 21:06:14] Set ATHENA_PROC_NUMBER=2
[2026-03-25 21:06:14] Set ATHENA_CORE_NUMBER=2
[2026-03-25 21:06:14] Starting ATLAS job with PandaID=7056977207
[2026-03-25 21:06:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 02:41:32]  *** The last 200 lines of the pilot log: ***
[2026-03-26 02:41:32] 2026-03-26 01:41:00,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | job 7056977207 has completed (purged errors)
[2026-03-26 02:41:32] 2026-03-26 01:41:00,982 | INFO     | overall cleanup function is called
[2026-03-26 02:41:32] 2026-03-26 01:41:01,988 | INFO     | --- collectZombieJob: --- 10, [3113111]
[2026-03-26 02:41:32] 2026-03-26 01:41:01,988 | INFO     | zombie collector waiting for pid 3113111
[2026-03-26 02:41:32] 2026-03-26 01:41:01,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-26 02:41:32] 2026-03-26 01:41:01,989 | INFO     | collected zombie processes
[2026-03-26 02:41:32] 2026-03-26 01:41:01,989 | INFO     | will attempt to kill all subprocesses of pid=3113111
[2026-03-26 02:41:32] 2026-03-26 01:41:02,018 | INFO     | process IDs to be killed: [3113111] (in reverse order)
[2026-03-26 02:41:32] 2026-03-26 01:41:02,041 | WARNING  | found no corresponding commands to process id(s)
[2026-03-26 02:41:32] 2026-03-26 01:41:02,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-26 02:41:32] 2026-03-26 01:41:02,045 | INFO     | did not find any defunct processes belonging to 3113111
[2026-03-26 02:41:32] 2026-03-26 01:41:02,048 | INFO     | did not find any defunct processes belonging to 3113111
[2026-03-26 02:41:32] 2026-03-26 01:41:02,048 | INFO     | ready for new job
[2026-03-26 02:41:32] 2026-03-26 01:41:02,049 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-26 02:41:32] 2026-03-26 01:41:02,052 | INFO     | **************************************
[2026-03-26 02:41:32] 2026-03-26 01:41:02,052 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-26 02:41:32] 2026-03-26 01:41:02,052 | INFO     | **************************************
[2026-03-26 02:41:32] 2026-03-26 01:41:02,052 | INFO     | 
[2026-03-26 02:41:32] 2026-03-26 01:41:02,053 | INFO     | architecture information:
[2026-03-26 02:41:32] 2026-03-26 01:41:02,054 | INFO     | executing command: cat /etc/os-release
[2026-03-26 02:41:32] 2026-03-26 01:41:02,085 | INFO     | cat /etc/os-release:
[2026-03-26 02:41:32] NAME="CentOS Linux"
[2026-03-26 02:41:32] VERSION="7 (Core)"
[2026-03-26 02:41:32] ID="centos"
[2026-03-26 02:41:32] ID_LIKE="rhel fedora"
[2026-03-26 02:41:32] VERSION_ID="7"
[2026-03-26 02:41:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-26 02:41:32] ANSI_COLOR="0;31"
[2026-03-26 02:41:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-26 02:41:32] HOME_URL="https://www.centos.org/"
[2026-03-26 02:41:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-26 02:41:32] 
[2026-03-26 02:41:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-26 02:41:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-26 02:41:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-26 02:41:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-26 02:41:32] 
[2026-03-26 02:41:32] 2026-03-26 01:41:02,086 | INFO     | **************************************
[2026-03-26 02:41:32] 2026-03-26 01:41:02,590 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-26 02:41:32] 2026-03-26 01:41:02,602 | INFO     | sufficient remaining disk space (504876761088 B)
[2026-03-26 02:41:32] 2026-03-26 01:41:02,602 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-26 02:41:32] 2026-03-26 01:41:02,603 | INFO     | current server update state: UPDATING_FINAL
[2026-03-26 02:41:32] 2026-03-26 01:41:02,603 | INFO     | update_server=False
[2026-03-26 02:41:32] 2026-03-26 01:41:02,603 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-26 02:41:32] 2026-03-26 01:41:02,603 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-26 02:41:32] 2026-03-26 01:41:02,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-26 02:41:32] 2026-03-26 01:41:03,246 | INFO     | all data control threads have been joined
[2026-03-26 02:41:32] 2026-03-26 01:41:03,304 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 02:41:32] 2026-03-26 01:41:03,304 | INFO     | aborting loop
[2026-03-26 02:41:32] 2026-03-26 01:41:03,608 | INFO     | [job] retrieve thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:03,609 | INFO     | [job] queue monitor thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:03,626 | INFO     | all payload control threads have been joined
[2026-03-26 02:41:32] 2026-03-26 01:41:03,649 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:03,704 | INFO     | [payload] validate_post thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:04,234 | INFO     | all job control threads have been joined
[2026-03-26 02:41:32] 2026-03-26 01:41:04,252 | INFO     | [data] control thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:04,310 | INFO     | [job] job monitor thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:04,499 | INFO     | [payload] failed_post thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:04,609 | INFO     | [data] copytool_out thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:04,632 | INFO     | [payload] control thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:04,680 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:04,743 | INFO     | [data] copytool_in thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:04,792 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:04,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-26 02:41:32] 2026-03-26 01:41:05,011 | INFO     | [job] validate thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:05,242 | INFO     | [job] control thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:05,260 | INFO     | [monitor] cgroup control has ended
[2026-03-26 02:41:32] 2026-03-26 01:41:08,826 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:13,347 | INFO     | job.realtimelogging is not enabled
[2026-03-26 02:41:32] 2026-03-26 01:41:14,353 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 02:41:32] 2026-03-26 01:41:14,564 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140127150040896)>', '<ExcThread(monitor, started 140126487291648)>']
[2026-03-26 02:41:32] 2026-03-26 01:41:19,579 | INFO     | all workflow threads have been joined
[2026-03-26 02:41:32] 2026-03-26 01:41:19,579 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 02:41:32] 2026-03-26 01:41:19,580 | INFO     | traces error code: 0
[2026-03-26 02:41:32] 2026-03-26 01:41:19,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 02:41:32] 2026-03-26 01:41:32,367 | INFO     | PID=3108700 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-26 02:41:32] 2026-03-26 01:41:32,367 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 02:41:32] 2026-03-26 01:41:32,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 02:41:32] 2026-03-26 01:41:32,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 02:41:32] 2026-03-26 01:41:32,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 02:41:32] 2026-03-26 01:41:32,367 | INFO     | [monitor] control thread has ended
[2026-03-26 02:41:32] 2026-03-26 01:41:32,406 [wrapper] ==== pilot stdout END ====
[2026-03-26 02:41:32] 2026-03-26 01:41:32,409 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 02:41:32] 2026-03-26 01:41:32,411 [wrapper] pilotpid: 3108700
[2026-03-26 02:41:32] 2026-03-26 01:41:32,413 [wrapper] Pilot exit status: 0
[2026-03-26 02:41:32] 2026-03-26 01:41:32,420 [wrapper] pandaids: 7056977207
[2026-03-26 02:41:32] 2026-03-26 01:41:32,432 [wrapper] cleanup supervisor_pilot 3119332 3108701
[2026-03-26 02:41:32] 2026-03-26 01:41:32,434 [wrapper] Test setup, not cleaning
[2026-03-26 02:41:32] 2026-03-26 01:41:32,437 [wrapper] apfmon messages muted
[2026-03-26 02:41:32] 2026-03-26 01:41:32,439 [wrapper] ==== wrapper stdout END ====
[2026-03-26 02:41:32] 2026-03-26 01:41:32,442 [wrapper] ==== wrapper stderr END ====
[2026-03-26 02:41:32]  *** Error codes and diagnostics ***
[2026-03-26 02:41:32]     "exeErrorCode": 0,
[2026-03-26 02:41:32]     "exeErrorDiag": "",
[2026-03-26 02:41:32]     "pilotErrorCode": 0,
[2026-03-26 02:41:32]     "pilotErrorDiag": "",
[2026-03-26 02:41:32]  *** Listing of results directory ***
[2026-03-26 02:41:32] total 486908
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc    585013 Mar 16 18:24 pilot3.tar.gz
[2026-03-26 02:41:32] -rwx------ 1 boinc boinc     36322 Mar 16 18:24 runpilot2-wrapper.sh
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc      5111 Mar 16 18:25 queuedata.json
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc       100 Mar 25 21:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 02:41:32] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 21:06 run_atlas
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc       105 Mar 25 21:06 job.xml
[2026-03-26 02:41:32] -rw-r--r-- 2 boinc boinc 245337218 Mar 25 21:06 EVNT.49135495._000029.pool.root.1
[2026-03-26 02:41:32] -rw-r--r-- 2 boinc boinc    597545 Mar 25 21:06 input.tar.gz
[2026-03-26 02:41:32] -rw-r--r-- 2 boinc boinc     15845 Mar 25 21:06 start_atlas.sh
[2026-03-26 02:41:32] drwxrwx--x 2 boinc boinc      4096 Mar 25 21:06 shared
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc         0 Mar 25 21:06 boinc_setup_complete
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc      6208 Mar 25 21:06 init_data.xml
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc         0 Mar 25 21:06 boinc_lockfile
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc      2618 Mar 25 21:06 pandaJob.out
[2026-03-26 02:41:32] -rw------- 1 boinc boinc   1012179 Mar 25 21:06 agis_schedconf.cvmfs.json
[2026-03-26 02:41:32] -rw------- 1 boinc boinc       428 Mar 25 21:06 workernode_map.json
[2026-03-26 02:41:32] drwx------ 5 boinc boinc      4096 Mar 25 21:06 pilot3
[2026-03-26 02:41:32] -rw------- 1 boinc boinc 242806263 Mar 26 02:40 HITS.49181660._000711.pool.root.1
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc       530 Mar 26 02:40 boinc_task_state.xml
[2026-03-26 02:41:32] -rw------- 1 boinc boinc      1016 Mar 26 02:40 memory_monitor_summary.json
[2026-03-26 02:41:32] -rw------- 1 boinc boinc   1511579 Mar 26 02:40 agis_ddmendpoints.agis.ALL.json
[2026-03-26 02:41:32] -rw------- 1 boinc boinc    445878 Mar 26 02:40 log.49181660._000711.job.log.tgz.1
[2026-03-26 02:41:32] -rw------- 1 boinc boinc      6305 Mar 26 02:41 heartbeat.json
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc      8192 Mar 26 02:41 boinc_mmap_file
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc        28 Mar 26 02:41 wrapper_checkpoint.txt
[2026-03-26 02:41:32] -rw------- 1 boinc boinc       747 Mar 26 02:41 pilotlog.txt
[2026-03-26 02:41:32] -rw------- 1 boinc boinc        95 Mar 26 02:41 pilot_heartbeat.json
[2026-03-26 02:41:32] -rw------- 1 boinc boinc   2816680 Mar 26 02:41 log.49181660._000711.job.log.1
[2026-03-26 02:41:32] -rw------- 1 boinc boinc       357 Mar 26 02:41 output.list
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc       620 Mar 26 02:41 runtime_log
[2026-03-26 02:41:32] -rw------- 1 boinc boinc   3276800 Mar 26 02:41 result.tar.gz
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc      8912 Mar 26 02:41 runtime_log.err
[2026-03-26 02:41:32] -rw------- 1 boinc boinc       664 Mar 26 02:41 fo5KDmUrQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmPZvLDmJHgj8n.diag
[2026-03-26 02:41:32] -rw-r--r-- 1 boinc boinc     12442 Mar 26 02:41 stderr.txt
[2026-03-26 02:41:32] HITS file was successfully produced:
[2026-03-26 02:41:32] -rw------- 1 boinc boinc 242806263 Mar 26 02:40 shared/HITS.pool.root.1
[2026-03-26 02:41:32]  *** Contents of shared directory: ***
[2026-03-26 02:41:32] total 480512
[2026-03-26 02:41:32] -rw-r--r-- 2 boinc boinc 245337218 Mar 25 21:06 ATLAS.root_0
[2026-03-26 02:41:32] -rw-r--r-- 2 boinc boinc    597545 Mar 25 21:06 input.tar.gz
[2026-03-26 02:41:32] -rw-r--r-- 2 boinc boinc     15845 Mar 25 21:06 start_atlas.sh
[2026-03-26 02:41:32] -rw------- 1 boinc boinc 242806263 Mar 26 02:40 HITS.pool.root.1
[2026-03-26 02:41:32] -rw------- 1 boinc boinc   3276800 Mar 26 02:41 result.tar.gz
02:41:34 (3104674): run_atlas exited; CPU time 39522.518815
02:41:34 (3104674): called boinc_finish(0)

</stderr_txt>
]]>

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