Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:12:07 (1019559): wrapper (7.7.26015): starting
21:12:07 (1019559): wrapper: running run_atlas (--nthreads 3)
[2026-03-26 21:12:07] Arguments: --nthreads 3
[2026-03-26 21:12:07] Threads: 3
[2026-03-26 21:12:07] Checking for CVMFS
[2026-03-26 21:12:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 21:12:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 21:12:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 21:12:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 21:12:07] 2.9.2.0 1002207 197 51304 157732 2 57 27869015 36864001 0 130560 0 66559 99.974 7222 6442 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-26 21:12:07] CVMFS is ok
[2026-03-26 21:12:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 21:12:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 21:12:07] Further information can be found at the LHC@home message board.
[2026-03-26 21:12:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 21:12:07] Checking for apptainer binary...
[2026-03-26 21:12:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 21:12:07] Running /usr/bin/apptainer --version
[2026-03-26 21:12:07] apptainer version 1.4.1-1.1
[2026-03-26 21:12:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 21:12:07] atlasA115
[2026-03-26 21:12:07] apptainer works
[2026-03-26 21:12:07] Set ATHENA_PROC_NUMBER=3
[2026-03-26 21:12:07] Set ATHENA_CORE_NUMBER=3
[2026-03-26 21:12:08] Starting ATLAS job with PandaID=7056974103
[2026-03-26 21:12:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 00:43:38]  *** The last 200 lines of the pilot log: ***
[2026-03-27 00:43:38] 2026-03-26 23:43:06,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-27 00:43:38] 2026-03-26 23:43:06,982 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-27 00:43:38] 2026-03-26 23:43:06,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-27 00:43:38] 2026-03-26 23:43:06,982 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 00:43:38] 2026-03-26 23:43:06,982 | INFO     | job 7056974103 has completed (purged errors)
[2026-03-27 00:43:38] 2026-03-26 23:43:06,982 | INFO     | overall cleanup function is called
[2026-03-27 00:43:38] 2026-03-26 23:43:07,453 | WARNING  | process 1027717 can no longer be monitored (due to stat problems) - aborting
[2026-03-27 00:43:38] 2026-03-26 23:43:07,481 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-27 00:43:38] 2026-03-26 23:43:07,517 | INFO     | number of running child processes to parent process 1027717: 1
[2026-03-27 00:43:38] 2026-03-26 23:43:07,517 | INFO     | maximum number of monitored processes: 6
[2026-03-27 00:43:38] 2026-03-26 23:43:07,517 | INFO     | aborting job monitoring since job object (job id=7056974103) has expired
[2026-03-27 00:43:38] 2026-03-26 23:43:07,988 | INFO     | --- collectZombieJob: --- 10, [1027717]
[2026-03-27 00:43:38] 2026-03-26 23:43:07,989 | INFO     | zombie collector waiting for pid 1027717
[2026-03-27 00:43:38] 2026-03-26 23:43:07,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 00:43:38] 2026-03-26 23:43:07,989 | INFO     | collected zombie processes
[2026-03-27 00:43:38] 2026-03-26 23:43:07,989 | INFO     | will attempt to kill all subprocesses of pid=1027717
[2026-03-27 00:43:38] 2026-03-26 23:43:08,029 | INFO     | process IDs to be killed: [1027717] (in reverse order)
[2026-03-27 00:43:38] 2026-03-26 23:43:08,053 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 00:43:38] 2026-03-26 23:43:08,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 00:43:38] 2026-03-26 23:43:08,054 | INFO     | did not find any defunct processes belonging to 1027717
[2026-03-27 00:43:38] 2026-03-26 23:43:08,055 | INFO     | did not find any defunct processes belonging to 1027717
[2026-03-27 00:43:38] 2026-03-26 23:43:08,055 | INFO     | ready for new job
[2026-03-27 00:43:38] 2026-03-26 23:43:08,055 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 00:43:38] 2026-03-26 23:43:08,056 | INFO     | **************************************
[2026-03-27 00:43:38] 2026-03-26 23:43:08,056 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 00:43:38] 2026-03-26 23:43:08,056 | INFO     | **************************************
[2026-03-27 00:43:38] 2026-03-26 23:43:08,056 | INFO     | 
[2026-03-27 00:43:38] 2026-03-26 23:43:08,056 | INFO     | architecture information:
[2026-03-27 00:43:38] 2026-03-26 23:43:08,056 | INFO     | executing command: cat /etc/os-release
[2026-03-27 00:43:38] 2026-03-26 23:43:08,066 | INFO     | cat /etc/os-release:
[2026-03-27 00:43:38] NAME="CentOS Linux"
[2026-03-27 00:43:38] VERSION="7 (Core)"
[2026-03-27 00:43:38] ID="centos"
[2026-03-27 00:43:38] ID_LIKE="rhel fedora"
[2026-03-27 00:43:38] VERSION_ID="7"
[2026-03-27 00:43:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 00:43:38] ANSI_COLOR="0;31"
[2026-03-27 00:43:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 00:43:38] HOME_URL="https://www.centos.org/"
[2026-03-27 00:43:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 00:43:38] 
[2026-03-27 00:43:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 00:43:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 00:43:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 00:43:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 00:43:38] 
[2026-03-27 00:43:38] 2026-03-26 23:43:08,066 | INFO     | **************************************
[2026-03-27 00:43:38] 2026-03-26 23:43:08,569 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-27 00:43:38] 2026-03-26 23:43:08,582 | INFO     | sufficient remaining disk space (331487379456 B)
[2026-03-27 00:43:38] 2026-03-26 23:43:08,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 00:43:38] 2026-03-26 23:43:08,583 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 00:43:38] 2026-03-26 23:43:08,583 | INFO     | update_server=False
[2026-03-27 00:43:38] 2026-03-26 23:43:08,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 00:43:38] 2026-03-26 23:43:08,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 00:43:38] 2026-03-26 23:43:08,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 00:43:38] 2026-03-26 23:43:08,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 00:43:38] 2026-03-26 23:43:08,583 | INFO     | aborting loop
[2026-03-27 00:43:38] 2026-03-26 23:43:08,679 | INFO     | all data control threads have been joined
[2026-03-27 00:43:38] 2026-03-26 23:43:09,283 | INFO     | job.realtimelogging is not enabled
[2026-03-27 00:43:38] 2026-03-26 23:43:09,588 | INFO     | [job] queue monitor thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:09,589 | INFO     | [job] retrieve thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:09,589 | INFO     | [job] job monitor thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:09,681 | INFO     | [data] control thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:09,711 | INFO     | [payload] failed_post thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:09,711 | INFO     | all payload control threads have been joined
[2026-03-27 00:43:38] 2026-03-26 23:43:09,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 00:43:38] 2026-03-26 23:43:10,132 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:10,257 | INFO     | all job control threads have been joined
[2026-03-27 00:43:38] 2026-03-26 23:43:10,288 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:10,325 | INFO     | [job] validate thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:10,359 | INFO     | [payload] validate_post thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:10,463 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:10,492 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:10,574 | INFO     | [data] copytool_in thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:10,717 | INFO     | [payload] control thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:11,263 | INFO     | [job] control thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:11,921 | INFO     | [data] copytool_out thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:12,590 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 00:43:38] 2026-03-26 23:43:29,410 | INFO     | [monitor] cgroup control has ended
[2026-03-27 00:43:38] 2026-03-26 23:43:30,950 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140173973821248)>', '<ExcThread(monitor, started 140173354456832)>']
[2026-03-27 00:43:38] 2026-03-26 23:43:35,975 | INFO     | all workflow threads have been joined
[2026-03-27 00:43:38] 2026-03-26 23:43:35,976 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 00:43:38] 2026-03-26 23:43:35,976 | INFO     | traces error code: 0
[2026-03-27 00:43:38] 2026-03-26 23:43:35,976 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 00:43:38] 2026-03-26 23:43:38,300 | INFO     | PID=1023295 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-27 00:43:38] 2026-03-26 23:43:38,301 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 00:43:38] 2026-03-26 23:43:38,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 00:43:38] 2026-03-26 23:43:38,301 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 00:43:38] 2026-03-26 23:43:38,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 00:43:38] 2026-03-26 23:43:38,301 | INFO     | [monitor] control thread has ended
[2026-03-27 00:43:38] 2026-03-26 23:43:38,348 [wrapper] ==== pilot stdout END ====
[2026-03-27 00:43:38] 2026-03-26 23:43:38,351 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 00:43:38] 2026-03-26 23:43:38,353 [wrapper] pilotpid: 1023295
[2026-03-27 00:43:38] 2026-03-26 23:43:38,355 [wrapper] Pilot exit status: 0
[2026-03-27 00:43:38] 2026-03-26 23:43:38,362 [wrapper] pandaids: 7056974103
[2026-03-27 00:43:38] 2026-03-26 23:43:38,378 [wrapper] cleanup supervisor_pilot 1034608 1023296
[2026-03-27 00:43:38] 2026-03-26 23:43:38,380 [wrapper] Test setup, not cleaning
[2026-03-27 00:43:38] 2026-03-26 23:43:38,383 [wrapper] apfmon messages muted
[2026-03-27 00:43:38] 2026-03-26 23:43:38,385 [wrapper] ==== wrapper stdout END ====
[2026-03-27 00:43:38] 2026-03-26 23:43:38,388 [wrapper] ==== wrapper stderr END ====
[2026-03-27 00:43:38]  *** Error codes and diagnostics ***
[2026-03-27 00:43:38]     "exeErrorCode": 0,
[2026-03-27 00:43:38]     "exeErrorDiag": "",
[2026-03-27 00:43:38]     "pilotErrorCode": 0,
[2026-03-27 00:43:38]     "pilotErrorDiag": "",
[2026-03-27 00:43:38]  *** Listing of results directory ***
[2026-03-27 00:43:38] total 482412
[2026-03-27 00:43:38] -rwx------ 1 boinc boinc     36322 Mar 16 17:43 runpilot2-wrapper.sh
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc    585013 Mar 16 17:45 pilot3.tar.gz
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc      5111 Mar 16 17:45 queuedata.json
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc       100 Mar 26 21:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 00:43:38] -rwxr-xr-x 1 boinc boinc      7986 Mar 26 21:12 run_atlas
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc       105 Mar 26 21:12 job.xml
[2026-03-27 00:43:38] -rw-r--r-- 2 boinc boinc 245871230 Mar 26 21:12 EVNT.49134557._000004.pool.root.1
[2026-03-27 00:43:38] drwxrwx--x 2 boinc boinc      4096 Mar 26 21:12 shared
[2026-03-27 00:43:38] -rw-r--r-- 2 boinc boinc    597543 Mar 26 21:12 input.tar.gz
[2026-03-27 00:43:38] -rw-r--r-- 2 boinc boinc     15845 Mar 26 21:12 start_atlas.sh
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc         0 Mar 26 21:12 boinc_setup_complete
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc      6441 Mar 26 21:12 init_data.xml
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc         0 Mar 26 21:12 boinc_lockfile
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc      2611 Mar 26 21:12 pandaJob.out
[2026-03-27 00:43:38] -rw------- 1 boinc boinc   1012344 Mar 26 21:12 agis_schedconf.cvmfs.json
[2026-03-27 00:43:38] -rw------- 1 boinc boinc       422 Mar 26 21:12 workernode_map.json
[2026-03-27 00:43:38] drwx------ 5 boinc boinc      4096 Mar 26 21:12 pilot3
[2026-03-27 00:43:38] -rw------- 1 boinc boinc 239921887 Mar 27 00:42 HITS.49181154._000079.pool.root.1
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc       530 Mar 27 00:42 boinc_task_state.xml
[2026-03-27 00:43:38] -rw------- 1 boinc boinc      1020 Mar 27 00:43 memory_monitor_summary.json
[2026-03-27 00:43:38] -rw------- 1 boinc boinc   1511579 Mar 27 00:43 agis_ddmendpoints.agis.ALL.json
[2026-03-27 00:43:38] -rw------- 1 boinc boinc    349867 Mar 27 00:43 log.49181154._000079.job.log.tgz.1
[2026-03-27 00:43:38] -rw------- 1 boinc boinc      6307 Mar 27 00:43 heartbeat.json
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc        28 Mar 27 00:43 wrapper_checkpoint.txt
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc      8192 Mar 27 00:43 boinc_mmap_file
[2026-03-27 00:43:38] -rw------- 1 boinc boinc       747 Mar 27 00:43 pilotlog.txt
[2026-03-27 00:43:38] -rw------- 1 boinc boinc        95 Mar 27 00:43 pilot_heartbeat.json
[2026-03-27 00:43:38] -rw------- 1 boinc boinc   1785037 Mar 27 00:43 log.49181154._000079.job.log.1
[2026-03-27 00:43:38] -rw------- 1 boinc boinc       357 Mar 27 00:43 output.list
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc       620 Mar 27 00:43 runtime_log
[2026-03-27 00:43:38] -rw------- 1 boinc boinc   2150400 Mar 27 00:43 result.tar.gz
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc      8912 Mar 27 00:43 runtime_log.err
[2026-03-27 00:43:38] -rw------- 1 boinc boinc       663 Mar 27 00:43 qHzNDm8CQM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUdyLDm817Pnm.diag
[2026-03-27 00:43:38] -rw-r--r-- 1 boinc boinc     11933 Mar 27 00:43 stderr.txt
[2026-03-27 00:43:38] HITS file was successfully produced:
[2026-03-27 00:43:38] -rw------- 1 boinc boinc 239921887 Mar 27 00:42 shared/HITS.pool.root.1
[2026-03-27 00:43:38]  *** Contents of shared directory: ***
[2026-03-27 00:43:38] total 477120
[2026-03-27 00:43:38] -rw-r--r-- 2 boinc boinc 245871230 Mar 26 21:12 ATLAS.root_0
[2026-03-27 00:43:38] -rw-r--r-- 2 boinc boinc    597543 Mar 26 21:12 input.tar.gz
[2026-03-27 00:43:38] -rw-r--r-- 2 boinc boinc     15845 Mar 26 21:12 start_atlas.sh
[2026-03-27 00:43:38] -rw------- 1 boinc boinc 239921887 Mar 27 00:42 HITS.pool.root.1
[2026-03-27 00:43:38] -rw------- 1 boinc boinc   2150400 Mar 27 00:43 result.tar.gz
00:43:40 (1019559): run_atlas exited; CPU time 36789.267956
00:43:40 (1019559): called boinc_finish(0)

</stderr_txt>
]]>

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