Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:05:55 (26622): wrapper (7.7.26015): starting
00:05:55 (26622): wrapper: running run_atlas (--nthreads 8)
[2026-03-25 00:05:55] Arguments: --nthreads 8
[2026-03-25 00:05:55] Threads: 8
[2026-03-25 00:05:55] Checking for CVMFS
[2026-03-25 00:05:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 00:05:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 00:05:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 00:05:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 00:05:55] 2.11.0.0 4219 236073 68152 157660 0 1 3406994 4096000 0 130560 5 9769423 99.498 11031551 340 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-25 00:05:55] CVMFS is ok
[2026-03-25 00:05:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 00:05:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 00:05:55] Further information can be found at the LHC@home message board.
[2026-03-25 00:05:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 00:05:55] Checking for apptainer binary...
[2026-03-25 00:05:55] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-25 00:05:55] apptainer is not installed, using version from CVMFS
[2026-03-25 00:05:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 00:05:56] WARNING: Environment variable TMPDIR already has value [/tmp/job_11389168/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node305
[2026-03-25 00:05:56] apptainer works
[2026-03-25 00:05:56] Set ATHENA_PROC_NUMBER=8
[2026-03-25 00:05:56] Set ATHENA_CORE_NUMBER=8
[2026-03-25 00:05:56] Starting ATLAS job with PandaID=7056974626
[2026-03-25 00:05:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11389168/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 01:40:50]  *** The last 200 lines of the pilot log: ***
[2026-03-25 01:40:50]  guid=c49780c6-2579-4c5c-84ba-1438c5eedb56
[2026-03-25 01:40:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-25 01:40:50]  is_altstaged=None
[2026-03-25 01:40:50]  is_tar=False
[2026-03-25 01:40:50]  lfn=log.49181340._000065.job.log.tgz.1
[2026-03-25 01:40:50]  mtime=0
[2026-03-25 01:40:50]  protocol_id=None
[2026-03-25 01:40:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-25 01:40:50]  replicas=None
[2026-03-25 01:40:50]  scope=mc23_13p6TeV
[2026-03-25 01:40:50]  status=None
[2026-03-25 01:40:50]  status_code=0
[2026-03-25 01:40:50]  storage_token=
[2026-03-25 01:40:50]  surl=/tmp/job_11389168/atlas/pilot/slots/0/PanDA_Pilot-7056974626/log.49181340._000065.job.log.tgz.1
[2026-03-25 01:40:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/e3/log.49181340._000065.job.log.tgz.1
[2026-03-25 01:40:50]  workdir=None
[2026-03-25 01:40:50] ]
[2026-03-25 01:40:50] 2026-03-25 00:39:53,748 | INFO     | transferring file log.49181340._000065.job.log.tgz.1 from /tmp/job_11389168/atlas/pilot/slots/0/PanDA_Pilot-7056974626/log.49181340._000065.job.log.tgz.1 to /tmp/j
[2026-03-25 01:40:50] 2026-03-25 00:39:53,748 | INFO     | executing command: /usr/bin/env mv /tmp/job_11389168/atlas/pilot/slots/0/PanDA_Pilot-7056974626/log.49181340._000065.job.log.tgz.1 /tmp/job_11389168/atlas/pilot/sl
[2026-03-25 01:40:50] 2026-03-25 00:39:53,756 | INFO     | adding to output.list: log.49181340._000065.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/e3/log.49181340._000065.job.log.tg
[2026-03-25 01:40:50] 2026-03-25 00:39:53,757 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-25 01:40:50] 2026-03-25 00:39:53,757 | INFO     | summary of transferred files:
[2026-03-25 01:40:50] 2026-03-25 00:39:53,757 | INFO     |  -- lfn=log.49181340._000065.job.log.tgz.1, status_code=0, status=transferred
[2026-03-25 01:40:50] 2026-03-25 00:39:53,757 | INFO     | stage-out finished correctly
[2026-03-25 01:40:50] 2026-03-25 00:39:55,590 | INFO     | monitor loop #420: job 0:7056974626 is in state 'finished'
[2026-03-25 01:40:50] 2026-03-25 00:39:55,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-25 01:40:50] 2026-03-25 00:39:55,613 | INFO     | time since job start (5601s) is within the limit (345600.0s)
[2026-03-25 01:40:50] 2026-03-25 00:39:55,847 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-25 01:40:50] 2026-03-25 00:39:55,896 | INFO     | job 7056974626 has state=finished
[2026-03-25 01:40:50] 2026-03-25 00:39:55,896 | INFO     | preparing for final server update for job 7056974626 in state='finished'
[2026-03-25 01:40:50] 2026-03-25 00:39:55,896 | INFO     | reading metadata from: /tmp/job_11389168/atlas/pilot/slots/0/PanDA_Pilot-7056974626/jobReport.json
[2026-03-25 01:40:50] 2026-03-25 00:39:55,898 | INFO     | added worker_node to metadata from /tmp/job_11389168/atlas/pilot/slots/0/workernode_map.json
[2026-03-25 01:40:50] 2026-03-25 00:39:55,898 | INFO     | this job has now completed (state=finished)
[2026-03-25 01:40:50] 2026-03-25 00:39:55,898 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-25 01:40:50] 2026-03-25 00:39:55,898 | INFO     | log transfer has been attempted: DONE
[2026-03-25 01:40:50] 2026-03-25 00:39:55,898 | INFO     | job 7056974626 has finished - writing final server update
[2026-03-25 01:40:50] 2026-03-25 00:39:55,898 | INFO     | total number of processed events: 400 (read)
[2026-03-25 01:40:50] 2026-03-25 00:39:55,928 | INFO     | using path: /tmp/job_11389168/atlas/pilot/slots/0/PanDA_Pilot-7056974626/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 01:40:50] 2026-03-25 00:39:55,928 | INFO     | extracted standard info from prmon json
[2026-03-25 01:40:50] 2026-03-25 00:39:55,928 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 01:40:50] 2026-03-25 00:39:55,928 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 01:40:50] 2026-03-25 00:39:55,928 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 01:40:50] 2026-03-25 00:39:55,928 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 01:40:50] 2026-03-25 00:39:55,929 | INFO     | fitting pss+swap vs Time
[2026-03-25 01:40:50] 2026-03-25 00:39:55,929 | INFO     | sum of square deviations: 190403570.0
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | sum of deviations: 1096892727.9999998
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | mean x: 1774396478.0
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | mean y: 2529689.505882353
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | intersect: -10219561174.163383
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | chi2: 0.0011538022642673621
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | current memory leak: 5.76 B/s (using 85 data points, chi2=0.00)
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | could have reported an average CPU frequency of 3066 MHz (7 samples)
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | ..............................
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | . Timing measurements:
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | . get job = 0 s
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | . initial setup = 2 s
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | . payload setup = 3 s
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | . stage-in = 0 s
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | . payload execution = 5581 s
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | . stage-out = 0 s
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | . log creation = 0 s
[2026-03-25 01:40:50] 2026-03-25 00:39:55,930 | INFO     | ..............................
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | 
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | job summary report
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | --------------------------------------------------
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | PanDA job id: 7056974626
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | task id: 49181340
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | errors: (none)
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | pilot state: finished 
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | transexitcode: 0
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | exeerrorcode: 0
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | exeerrordiag: 
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | exitcode: 0
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | exitmsg: OK
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | cpuconsumptiontime: 41692 s
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | nevents: 400
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | neventsw: 0
[2026-03-25 01:40:50] 2026-03-25 00:39:56,103 | INFO     | pid: 6668
[2026-03-25 01:40:50] 2026-03-25 00:39:56,104 | INFO     | pgrp: 6668
[2026-03-25 01:40:50] 2026-03-25 00:39:56,104 | INFO     | corecount: 8
[2026-03-25 01:40:50] 2026-03-25 00:39:56,104 | INFO     | event service: False
[2026-03-25 01:40:50] 2026-03-25 00:39:56,104 | INFO     | sizes: {0: 2280182, 1: 2280444, 11: 2280472, 5588: 2316304, 5590: 2316498}
[2026-03-25 01:40:50] 2026-03-25 00:39:56,104 | INFO     | --------------------------------------------------
[2026-03-25 01:40:50] 2026-03-25 00:39:56,104 | INFO     | 
[2026-03-25 01:40:50] 2026-03-25 00:39:56,104 | INFO     | executing command: ls -lF /tmp/job_11389168/atlas/pilot/slots/0
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,114 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 01:40:50] 2026-03-25 00:39:56,115 | INFO     | job 7056974626 has completed (purged errors)
[2026-03-25 01:40:50] 2026-03-25 00:39:56,115 | INFO     | overall cleanup function is called
[2026-03-25 01:40:50] 2026-03-25 00:39:57,121 | INFO     | --- collectZombieJob: --- 10, [6668]
[2026-03-25 01:40:50] 2026-03-25 00:39:57,121 | INFO     | zombie collector waiting for pid 6668
[2026-03-25 01:40:50] 2026-03-25 00:39:57,121 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 01:40:50] 2026-03-25 00:39:57,121 | INFO     | collected zombie processes
[2026-03-25 01:40:50] 2026-03-25 00:39:57,121 | INFO     | will attempt to kill all subprocesses of pid=6668
[2026-03-25 01:40:50] 2026-03-25 00:39:57,234 | INFO     | process IDs to be killed: [6668] (in reverse order)
[2026-03-25 01:40:50] 2026-03-25 00:39:57,276 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 01:40:50] 2026-03-25 00:39:57,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 01:40:50] 2026-03-25 00:39:57,282 | INFO     | did not find any defunct processes belonging to 6668
[2026-03-25 01:40:50] 2026-03-25 00:39:57,285 | INFO     | did not find any defunct processes belonging to 6668
[2026-03-25 01:40:50] 2026-03-25 00:39:57,285 | INFO     | ready for new job
[2026-03-25 01:40:50] 2026-03-25 00:39:57,285 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 01:40:50] 2026-03-25 00:39:57,286 | INFO     | **************************************
[2026-03-25 01:40:50] 2026-03-25 00:39:57,286 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 01:40:50] 2026-03-25 00:39:57,286 | INFO     | **************************************
[2026-03-25 01:40:50] 2026-03-25 00:39:57,286 | INFO     | 
[2026-03-25 01:40:50] 2026-03-25 00:39:57,300 | INFO     | architecture information:
[2026-03-25 01:40:50] 2026-03-25 00:39:57,300 | INFO     | executing command: cat /etc/os-release
[2026-03-25 01:40:50] 2026-03-25 00:39:57,308 | INFO     | cat /etc/os-release:
[2026-03-25 01:40:50] NAME="CentOS Linux"
[2026-03-25 01:40:50] VERSION="7 (Core)"
[2026-03-25 01:40:50] ID="centos"
[2026-03-25 01:40:50] ID_LIKE="rhel fedora"
[2026-03-25 01:40:50] VERSION_ID="7"
[2026-03-25 01:40:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 01:40:50] ANSI_COLOR="0;31"
[2026-03-25 01:40:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 01:40:50] HOME_URL="https://www.centos.org/"
[2026-03-25 01:40:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 01:40:50] 
[2026-03-25 01:40:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 01:40:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 01:40:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 01:40:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 01:40:50] 
[2026-03-25 01:40:50] 2026-03-25 00:39:57,308 | INFO     | **************************************
[2026-03-25 01:40:50] 2026-03-25 00:39:57,811 | INFO     | executing command: df -mP /tmp/job_11389168/atlas/pilot/slots/0
[2026-03-25 01:40:50] 2026-03-25 00:39:57,819 | INFO     | sufficient remaining disk space (226651799552 B)
[2026-03-25 01:40:50] 2026-03-25 00:39:57,820 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 01:40:50] 2026-03-25 00:39:57,820 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 01:40:50] 2026-03-25 00:39:57,820 | INFO     | update_server=False
[2026-03-25 01:40:50] 2026-03-25 00:39:57,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 01:40:50] 2026-03-25 00:39:57,820 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 01:40:50] 2026-03-25 00:39:57,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 01:40:50] 2026-03-25 00:39:58,093 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-25 01:40:50] 2026-03-25 00:39:58,093 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-25 01:40:50] 2026-03-25 00:39:58,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 01:40:50] 2026-03-25 00:39:58,093 | INFO     | will abort loop
[2026-03-25 01:40:50] 2026-03-25 00:39:58,172 | INFO     | all data control threads have been joined
[2026-03-25 01:40:50] 2026-03-25 00:39:58,825 | INFO     | [job] retrieve thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:39:58,825 | INFO     | [job] queue monitor thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:39:59,095 | INFO     | [payload] validate_post thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:39:59,098 | INFO     | [job] job monitor thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:39:59,167 | INFO     | [payload] failed_post thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:39:59,177 | INFO     | [data] control thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:39:59,190 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:39:59,190 | INFO     | [data] copytool_in thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:39:59,203 | INFO     | all payload control threads have been joined
[2026-03-25 01:40:50] 2026-03-25 00:39:59,316 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 01:40:50] 2026-03-25 00:39:59,458 | INFO     | all job control threads have been joined
[2026-03-25 01:40:50] 2026-03-25 00:40:00,080 | INFO     | [job] validate thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:40:00,205 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:40:00,208 | INFO     | [payload] control thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:40:00,247 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:40:00,463 | INFO     | [job] control thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:40:01,321 | INFO     | [data] copytool_out thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:40:01,826 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:40:08,531 | INFO     | job.realtimelogging is not enabled
[2026-03-25 01:40:50] 2026-03-25 00:40:09,537 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 01:40:50] 2026-03-25 00:40:28,826 | INFO     | PID=32458 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-25 01:40:50] 2026-03-25 00:40:28,827 | INFO     | .. there are 2 such processes running
[2026-03-25 01:40:50] 2026-03-25 00:40:28,827 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 01:40:50] 2026-03-25 00:40:28,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 01:40:50] 2026-03-25 00:40:28,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 01:40:50] 2026-03-25 00:40:43,687 | INFO     | [monitor] cgroup control has ended
[2026-03-25 01:40:50] 2026-03-25 00:40:45,233 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-03-25 01:40:50] 2026-03-25 00:40:45,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 01:40:50] 2026-03-25 00:40:45,913 | INFO     | [monitor] control thread has ended
[2026-03-25 01:40:50] 2026-03-25 00:40:50,247 | INFO     | all workflow threads have been joined
[2026-03-25 01:40:50] 2026-03-25 00:40:50,247 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 01:40:50] 2026-03-25 00:40:50,248 | INFO     | traces error code: 0
[2026-03-25 01:40:50] 2026-03-25 00:40:50,248 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 01:40:50] 2026-03-25 00:40:50,305 [wrapper] ==== pilot stdout END ====
[2026-03-25 01:40:50] 2026-03-25 00:40:50,306 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 01:40:50] 2026-03-25 00:40:50,307 [wrapper] pilotpid: 32458
[2026-03-25 01:40:50] 2026-03-25 00:40:50,308 [wrapper] Pilot exit status: 0
[2026-03-25 01:40:50] 2026-03-25 00:40:50,311 [wrapper] pandaids: 7056974626
[2026-03-25 01:40:50] 2026-03-25 00:40:50,336 [wrapper] cleanup supervisor_pilot 18050 32459
[2026-03-25 01:40:50] 2026-03-25 00:40:50,337 [wrapper] Test setup, not cleaning
[2026-03-25 01:40:50] 2026-03-25 00:40:50,338 [wrapper] apfmon messages muted
[2026-03-25 01:40:50] 2026-03-25 00:40:50,339 [wrapper] ==== wrapper stdout END ====
[2026-03-25 01:40:50] 2026-03-25 00:40:50,340 [wrapper] ==== wrapper stderr END ====
[2026-03-25 01:40:50]  *** Error codes and diagnostics ***
[2026-03-25 01:40:50]     "exeErrorCode": 0,
[2026-03-25 01:40:50]     "exeErrorDiag": "",
[2026-03-25 01:40:50]     "pilotErrorCode": 0,
[2026-03-25 01:40:50]     "pilotErrorDiag": "",
[2026-03-25 01:40:50]  *** Listing of results directory ***
[2026-03-25 01:40:50] total 420596
[2026-03-25 01:40:50] -rwx------ 1 mf493845 unix-user     36322 Mar 16 17:43 runpilot2-wrapper.sh
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user    585013 Mar 16 17:45 pilot3.tar.gz
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user      5111 Mar 16 17:45 queuedata.json
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user       100 Mar 24 23:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 01:40:50] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 24 23:08 run_atlas
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user       105 Mar 24 23:08 job.xml
[2026-03-25 01:40:50] -rw-r--r-- 2 mf493845 unix-user 226428272 Mar 25 00:05 EVNT.49134913._000003.pool.root.1
[2026-03-25 01:40:50] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 00:05 start_atlas.sh
[2026-03-25 01:40:50] drwxrwx--x 2 mf493845 unix-user       100 Mar 25 00:05 shared
[2026-03-25 01:40:50] -rw-r--r-- 2 mf493845 unix-user    597540 Mar 25 00:05 input.tar.gz
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user      6390 Mar 25 00:05 init_data.xml
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user         0 Mar 25 00:05 boinc_setup_complete
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user      8192 Mar 25 00:05 boinc_mmap_file
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user         0 Mar 25 00:05 boinc_lockfile
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user      2625 Mar 25 00:05 pandaJob.out
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user   1010852 Mar 25 00:06 agis_schedconf.cvmfs.json
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user   1511579 Mar 25 00:06 agis_ddmendpoints.agis.ALL.json
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user       420 Mar 25 00:06 workernode_map.json
[2026-03-25 01:40:50] drwx------ 5 mf493845 unix-user       440 Mar 25 00:06 pilot3
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user 197989464 Mar 25 01:39 HITS.49181340._000065.pool.root.1
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user      1028 Mar 25 01:39 memory_monitor_summary.json
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user    343275 Mar 25 01:39 log.49181340._000065.job.log.tgz.1
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user      6311 Mar 25 01:39 heartbeat.json
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user        95 Mar 25 01:40 pilot_heartbeat.json
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user      5089 Mar 25 01:40 pilotlog.txt
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user    835408 Mar 25 01:40 log.49181340._000065.job.log.1
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user       357 Mar 25 01:40 output.list
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user       620 Mar 25 01:40 runtime_log
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user   1198080 Mar 25 01:40 result.tar.gz
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user      9219 Mar 25 01:40 runtime_log.err
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user       646 Mar 25 01:40 rtXNDmIDQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDm6SvLDmDwgv0m.diag
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user     21821 Mar 25 01:40 stderr.txt
[2026-03-25 01:40:50] HITS file was successfully produced:
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user 197989464 Mar 25 01:39 shared/HITS.pool.root.1
[2026-03-25 01:40:50]  *** Contents of shared directory: ***
[2026-03-25 01:40:50] total 416248
[2026-03-25 01:40:50] -rw-r--r-- 2 mf493845 unix-user 226428272 Mar 25 00:05 ATLAS.root_0
[2026-03-25 01:40:50] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 00:05 start_atlas.sh
[2026-03-25 01:40:50] -rw-r--r-- 2 mf493845 unix-user    597540 Mar 25 00:05 input.tar.gz
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user 197989464 Mar 25 01:39 HITS.pool.root.1
[2026-03-25 01:40:50] -rw------- 1 mf493845 unix-user   1198080 Mar 25 01:40 result.tar.gz
01:40:52 (26622): run_atlas exited; CPU time 41781.288652
01:40:52 (26622): called boinc_finish(0)

</stderr_txt>
]]>

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