Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:05:16 (32521): wrapper (7.7.26015): starting
00:05:16 (32521): wrapper: running run_atlas (--nthreads 8)
[2026-03-25 00:05:16] Arguments: --nthreads 8
[2026-03-25 00:05:16] Threads: 8
[2026-03-25 00:05:16] Checking for CVMFS
[2026-03-25 00:05:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 00:05:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 00:05:16] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 00:05:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 00:05:16] 2.11.0.0 4256 236707 106436 157660 2 188 2747351 4096001 1834 130560 3 13440222 99.574 14323337 378 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-25 00:05:16] CVMFS is ok
[2026-03-25 00:05:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 00:05:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 00:05:16] Further information can be found at the LHC@home message board.
[2026-03-25 00:05:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 00:05:16] Checking for apptainer binary...
[2026-03-25 00:05:16] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-25 00:05:16] apptainer is not installed, using version from CVMFS
[2026-03-25 00:05:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 00:05:17] WARNING: Environment variable TMPDIR already has value [/tmp/job_11389064/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node198
[2026-03-25 00:05:17] apptainer works
[2026-03-25 00:05:17] Set ATHENA_PROC_NUMBER=8
[2026-03-25 00:05:17] Set ATHENA_CORE_NUMBER=8
[2026-03-25 00:05:17] Starting ATLAS job with PandaID=7056969309
[2026-03-25 00:05:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11389064/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 01:54:41]  *** The last 200 lines of the pilot log: ***
[2026-03-25 01:54:41] 2026-03-25 00:53:38,282 | INFO     | log transfer has been attempted: DONE
[2026-03-25 01:54:41] 2026-03-25 00:53:38,282 | INFO     | job 7056969309 has finished - writing final server update
[2026-03-25 01:54:41] 2026-03-25 00:53:38,282 | INFO     | total number of processed events: 400 (read)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,299 | INFO     | using path: /tmp/job_11389064/atlas/pilot/slots/0/PanDA_Pilot-7056969309/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,299 | INFO     | extracted standard info from prmon json
[2026-03-25 01:54:41] 2026-03-25 00:53:38,299 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 01:54:41] 2026-03-25 00:53:38,299 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 01:54:41] 2026-03-25 00:53:38,299 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 01:54:41] 2026-03-25 00:53:38,299 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 01:54:41] 2026-03-25 00:53:38,300 | INFO     | fitting pss+swap vs Time
[2026-03-25 01:54:41] 2026-03-25 00:53:38,301 | INFO     | sum of square deviations: 379832238.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,301 | INFO     | sum of deviations: 10745871325.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,301 | INFO     | mean x: 1774396774.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,301 | INFO     | mean y: 2488857.196261682
[2026-03-25 01:54:41] 2026-03-25 00:53:38,301 | INFO     | intersect: -50197145363.68603
[2026-03-25 01:54:41] 2026-03-25 00:53:38,301 | INFO     | chi2: 1.802842247367138
[2026-03-25 01:54:41] 2026-03-25 00:53:38,301 | INFO     | sum of square deviations: 329031285.5
[2026-03-25 01:54:41] 2026-03-25 00:53:38,301 | INFO     | sum of deviations: 16245442316.5
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | mean x: 1774396621.5
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | mean y: 2504589.8921568627
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | intersect: -87605754051.43007
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | chi2: 1.1253362349019462
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | current chi2=1.1253362349019462 (change=37.5798832901003 %)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | sum of square deviations: 282974608.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | sum of deviations: 14793519554.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | mean x: 1774396469.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | mean y: 2499778.680412371
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | intersect: -92760483607.80087
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | chi2: 1.1273445538581948
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | current chi2=1.1273445538581948 (change=-0.17846390207310123 %)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,302 | INFO     | right removable region: 96
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | sum of square deviations: 329031285.5
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | sum of deviations: -1528613335.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | mean x: 1774396926.5
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | mean y: 2524777.5098039214
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | intersect: 8246016879.81603
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | chi2: 0.7046332594753166
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | current chi2=0.7046332594753166 (change=60.915423381920434 %)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | sum of square deviations: 282974608.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | sum of deviations: -2144954834.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | mean x: 1774397079.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | mean y: 2526812.1958762887
[2026-03-25 01:54:41] 2026-03-25 00:53:38,303 | INFO     | intersect: 13452502479.399664
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | chi2: 0.7049981894645135
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | current chi2=0.7049981894645135 (change=-0.05179006018941523 %)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | left removable region: 20
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | sum of square deviations: 136095575.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | sum of deviations: 1770451434.0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | mean x: 1774397048.5
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | mean y: 2546581.1315789474
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | intersect: -23080377305.27834
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | chi2: 0.0007885156222572743
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | current memory leak: 13.01 B/s (using 76 data points, chi2=0.00)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | could have reported an average CPU frequency of 2614 MHz (7 samples)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,304 | INFO     | ..............................
[2026-03-25 01:54:41] 2026-03-25 00:53:38,305 | INFO     | . Timing measurements:
[2026-03-25 01:54:41] 2026-03-25 00:53:38,305 | INFO     | . get job = 0 s
[2026-03-25 01:54:41] 2026-03-25 00:53:38,305 | INFO     | . initial setup = 2 s
[2026-03-25 01:54:41] 2026-03-25 00:53:38,305 | INFO     | . payload setup = 3 s
[2026-03-25 01:54:41] 2026-03-25 00:53:38,305 | INFO     | . stage-in = 0 s
[2026-03-25 01:54:41] 2026-03-25 00:53:38,305 | INFO     | . payload execution = 6471 s
[2026-03-25 01:54:41] 2026-03-25 00:53:38,305 | INFO     | . stage-out = 0 s
[2026-03-25 01:54:41] 2026-03-25 00:53:38,305 | INFO     | . log creation = 0 s
[2026-03-25 01:54:41] 2026-03-25 00:53:38,305 | INFO     | ..............................
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | 
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | job summary report
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | --------------------------------------------------
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | PanDA job id: 7056969309
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | task id: 49180747
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | errors: (none)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | pilot state: finished 
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | transexitcode: 0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | exeerrorcode: 0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | exeerrordiag: 
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | exitcode: 0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | exitmsg: OK
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | cpuconsumptiontime: 48328 s
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | nevents: 400
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | neventsw: 0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | pid: 8853
[2026-03-25 01:54:41] 2026-03-25 00:53:38,532 | INFO     | pgrp: 8853
[2026-03-25 01:54:41] 2026-03-25 00:53:38,533 | INFO     | corecount: 8
[2026-03-25 01:54:41] 2026-03-25 00:53:38,533 | INFO     | event service: False
[2026-03-25 01:54:41] 2026-03-25 00:53:38,533 | INFO     | sizes: {0: 2280177, 1: 2280439, 11: 2280467, 6478: 2307704, 6480: 2316732, 6483: 2317110}
[2026-03-25 01:54:41] 2026-03-25 00:53:38,533 | INFO     | --------------------------------------------------
[2026-03-25 01:54:41] 2026-03-25 00:53:38,533 | INFO     | 
[2026-03-25 01:54:41] 2026-03-25 00:53:38,533 | INFO     | executing command: ls -lF /tmp/job_11389064/atlas/pilot/slots/0
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,543 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,543 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,543 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,543 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,543 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,543 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 01:54:41] 2026-03-25 00:53:38,543 | INFO     | job 7056969309 has completed (purged errors)
[2026-03-25 01:54:41] 2026-03-25 00:53:38,543 | INFO     | overall cleanup function is called
[2026-03-25 01:54:41] 2026-03-25 00:53:39,549 | INFO     | --- collectZombieJob: --- 10, [8853]
[2026-03-25 01:54:41] 2026-03-25 00:53:39,549 | INFO     | zombie collector waiting for pid 8853
[2026-03-25 01:54:41] 2026-03-25 00:53:39,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 01:54:41] 2026-03-25 00:53:39,549 | INFO     | collected zombie processes
[2026-03-25 01:54:41] 2026-03-25 00:53:39,549 | INFO     | will attempt to kill all subprocesses of pid=8853
[2026-03-25 01:54:41] 2026-03-25 00:53:39,640 | INFO     | process IDs to be killed: [8853] (in reverse order)
[2026-03-25 01:54:41] 2026-03-25 00:53:39,671 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 01:54:41] 2026-03-25 00:53:39,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 01:54:41] 2026-03-25 00:53:39,674 | INFO     | did not find any defunct processes belonging to 8853
[2026-03-25 01:54:41] 2026-03-25 00:53:39,677 | INFO     | did not find any defunct processes belonging to 8853
[2026-03-25 01:54:41] 2026-03-25 00:53:39,677 | INFO     | ready for new job
[2026-03-25 01:54:41] 2026-03-25 00:53:39,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 01:54:41] 2026-03-25 00:53:39,678 | INFO     | **************************************
[2026-03-25 01:54:41] 2026-03-25 00:53:39,678 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 01:54:41] 2026-03-25 00:53:39,678 | INFO     | **************************************
[2026-03-25 01:54:41] 2026-03-25 00:53:39,678 | INFO     | 
[2026-03-25 01:54:41] 2026-03-25 00:53:39,691 | INFO     | architecture information:
[2026-03-25 01:54:41] 2026-03-25 00:53:39,691 | INFO     | executing command: cat /etc/os-release
[2026-03-25 01:54:41] 2026-03-25 00:53:39,697 | INFO     | cat /etc/os-release:
[2026-03-25 01:54:41] NAME="CentOS Linux"
[2026-03-25 01:54:41] VERSION="7 (Core)"
[2026-03-25 01:54:41] ID="centos"
[2026-03-25 01:54:41] ID_LIKE="rhel fedora"
[2026-03-25 01:54:41] VERSION_ID="7"
[2026-03-25 01:54:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 01:54:41] ANSI_COLOR="0;31"
[2026-03-25 01:54:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 01:54:41] HOME_URL="https://www.centos.org/"
[2026-03-25 01:54:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 01:54:41] 
[2026-03-25 01:54:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 01:54:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 01:54:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 01:54:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 01:54:41] 
[2026-03-25 01:54:41] 2026-03-25 00:53:39,697 | INFO     | **************************************
[2026-03-25 01:54:41] 2026-03-25 00:53:40,200 | INFO     | executing command: df -mP /tmp/job_11389064/atlas/pilot/slots/0
[2026-03-25 01:54:41] 2026-03-25 00:53:40,206 | INFO     | sufficient remaining disk space (226164211712 B)
[2026-03-25 01:54:41] 2026-03-25 00:53:40,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 01:54:41] 2026-03-25 00:53:40,207 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 01:54:41] 2026-03-25 00:53:40,207 | INFO     | update_server=False
[2026-03-25 01:54:41] 2026-03-25 00:53:40,207 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 01:54:41] 2026-03-25 00:53:40,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 01:54:41] 2026-03-25 00:53:40,550 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-25 01:54:41] 2026-03-25 00:53:40,550 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-25 01:54:41] 2026-03-25 00:53:40,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 01:54:41] 2026-03-25 00:53:40,550 | INFO     | will abort loop
[2026-03-25 01:54:41] 2026-03-25 00:53:40,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 01:54:41] 2026-03-25 00:53:40,858 | INFO     | all data control threads have been joined
[2026-03-25 01:54:41] 2026-03-25 00:53:41,212 | INFO     | [job] retrieve thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:41,212 | INFO     | [job] queue monitor thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:41,345 | INFO     | [job] validate thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:41,358 | INFO     | all payload control threads have been joined
[2026-03-25 01:54:41] 2026-03-25 00:53:41,398 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:41,429 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:41,555 | INFO     | [job] job monitor thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:41,741 | INFO     | [data] copytool_in thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:41,854 | INFO     | all job control threads have been joined
[2026-03-25 01:54:41] 2026-03-25 00:53:41,864 | INFO     | [data] control thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:41,870 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:42,363 | INFO     | [payload] control thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:42,411 | INFO     | [payload] validate_post thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:42,527 | INFO     | [payload] failed_post thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:42,532 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:42,599 | INFO     | [data] copytool_out thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:42,859 | INFO     | [job] control thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:53:43,643 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 01:54:41] 2026-03-25 00:53:47,648 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 01:54:41] 2026-03-25 00:54:09,867 | INFO     | PID=4308 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-25 01:54:41] 2026-03-25 00:54:09,868 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 01:54:41] 2026-03-25 00:54:09,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 01:54:41] 2026-03-25 00:54:09,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 01:54:41] 2026-03-25 00:54:34,398 | INFO     | [monitor] cgroup control has ended
[2026-03-25 01:54:41] 2026-03-25 00:54:36,508 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-03-25 01:54:41] 2026-03-25 00:54:37,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 01:54:41] 2026-03-25 00:54:37,001 | INFO     | [monitor] control thread has ended
[2026-03-25 01:54:41] 2026-03-25 00:54:41,532 | INFO     | all workflow threads have been joined
[2026-03-25 01:54:41] 2026-03-25 00:54:41,532 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 01:54:41] 2026-03-25 00:54:41,532 | INFO     | traces error code: 0
[2026-03-25 01:54:41] 2026-03-25 00:54:41,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 01:54:41] 2026-03-25 00:54:41,585 [wrapper] ==== pilot stdout END ====
[2026-03-25 01:54:41] 2026-03-25 00:54:41,586 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 01:54:41] 2026-03-25 00:54:41,587 [wrapper] pilotpid: 4308
[2026-03-25 01:54:41] 2026-03-25 00:54:41,589 [wrapper] Pilot exit status: 0
[2026-03-25 01:54:41] 2026-03-25 00:54:41,593 [wrapper] pandaids: 7056969309
[2026-03-25 01:54:41] 2026-03-25 00:54:41,615 [wrapper] cleanup supervisor_pilot  7207 4309
[2026-03-25 01:54:41] 2026-03-25 00:54:41,616 [wrapper] Test setup, not cleaning
[2026-03-25 01:54:41] 2026-03-25 00:54:41,617 [wrapper] apfmon messages muted
[2026-03-25 01:54:41] 2026-03-25 00:54:41,618 [wrapper] ==== wrapper stdout END ====
[2026-03-25 01:54:41] 2026-03-25 00:54:41,619 [wrapper] ==== wrapper stderr END ====
[2026-03-25 01:54:41]  *** Error codes and diagnostics ***
[2026-03-25 01:54:41]     "exeErrorCode": 0,
[2026-03-25 01:54:41]     "exeErrorDiag": "",
[2026-03-25 01:54:41]     "pilotErrorCode": 0,
[2026-03-25 01:54:41]     "pilotErrorDiag": "",
[2026-03-25 01:54:41]  *** Listing of results directory ***
[2026-03-25 01:54:41] total 470276
[2026-03-25 01:54:41] -rwx------ 1 mf493845 unix-user     36322 Mar 16 17:42 runpilot2-wrapper.sh
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user    585013 Mar 16 17:45 pilot3.tar.gz
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user      5111 Mar 16 17:45 queuedata.json
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user       100 Mar 24 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 01:54:41] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 24 23:04 run_atlas
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user       105 Mar 24 23:04 job.xml
[2026-03-25 01:54:41] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 00:05 start_atlas.sh
[2026-03-25 01:54:41] drwxrwx--x 2 mf493845 unix-user       100 Mar 25 00:05 shared
[2026-03-25 01:54:41] -rw-r--r-- 2 mf493845 unix-user    597529 Mar 25 00:05 input.tar.gz
[2026-03-25 01:54:41] -rw-r--r-- 2 mf493845 unix-user 240169558 Mar 25 00:05 EVNT.49133812._000001.pool.root.1
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user         0 Mar 25 00:05 boinc_setup_complete
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user      6391 Mar 25 00:05 init_data.xml
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user      8192 Mar 25 00:05 boinc_mmap_file
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user         0 Mar 25 00:05 boinc_lockfile
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user      2623 Mar 25 00:05 pandaJob.out
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user   1010852 Mar 25 00:05 agis_schedconf.cvmfs.json
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user   1511579 Mar 25 00:05 agis_ddmendpoints.agis.ALL.json
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user       416 Mar 25 00:05 workernode_map.json
[2026-03-25 01:54:41] drwx------ 5 mf493845 unix-user       440 Mar 25 00:05 pilot3
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user 234889372 Mar 25 01:53 HITS.49180747._000004.pool.root.1
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user      1020 Mar 25 01:53 memory_monitor_summary.json
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user    338690 Mar 25 01:53 log.49180747._000004.job.log.tgz.1
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user      6300 Mar 25 01:53 heartbeat.json
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user        95 Mar 25 01:54 pilot_heartbeat.json
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user      4941 Mar 25 01:54 pilotlog.txt
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user    957383 Mar 25 01:54 log.49180747._000004.job.log.1
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user       357 Mar 25 01:54 output.list
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user       620 Mar 25 01:54 runtime_log
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user   1310720 Mar 25 01:54 result.tar.gz
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user      9219 Mar 25 01:54 runtime_log.err
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user       643 Mar 25 01:54 CoQKDmwCQM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmyPvLDmzBVUtm.diag
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user     21476 Mar 25 01:54 stderr.txt
[2026-03-25 01:54:41] HITS file was successfully produced:
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user 234889372 Mar 25 01:53 shared/HITS.pool.root.1
[2026-03-25 01:54:41]  *** Contents of shared directory: ***
[2026-03-25 01:54:41] total 465812
[2026-03-25 01:54:41] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 25 00:05 start_atlas.sh
[2026-03-25 01:54:41] -rw-r--r-- 2 mf493845 unix-user    597529 Mar 25 00:05 input.tar.gz
[2026-03-25 01:54:41] -rw-r--r-- 2 mf493845 unix-user 240169558 Mar 25 00:05 ATLAS.root_0
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user 234889372 Mar 25 01:53 HITS.pool.root.1
[2026-03-25 01:54:41] -rw------- 1 mf493845 unix-user   1310720 Mar 25 01:54 result.tar.gz
01:54:42 (32521): run_atlas exited; CPU time 48427.928020
01:54:42 (32521): called boinc_finish(0)

</stderr_txt>
]]>

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