Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:46:07 (7983): wrapper (7.7.26015): starting
22:46:07 (7983): wrapper: running run_atlas (--nthreads 8)
[2026-03-24 22:46:07] Arguments: --nthreads 8
[2026-03-24 22:46:07] Threads: 8
[2026-03-24 22:46:07] Checking for CVMFS
[2026-03-24 22:46:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 22:46:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 22:46:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 22:46:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 22:46:07] 2.11.0.0 5647 29357 70440 157658 4 79 2633226 4096000 116 130560 1 1819532 99.343 1900295 263 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-24 22:46:07] CVMFS is ok
[2026-03-24 22:46:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 22:46:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 22:46:07] Further information can be found at the LHC@home message board.
[2026-03-24 22:46:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 22:46:07] Checking for apptainer binary...
[2026-03-24 22:46:07] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-24 22:46:07] apptainer is not installed, using version from CVMFS
[2026-03-24 22:46:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 22:46:07] WARNING: Environment variable TMPDIR already has value [/tmp/job_11388200/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node155
[2026-03-24 22:46:07] apptainer works
[2026-03-24 22:46:07] Set ATHENA_PROC_NUMBER=8
[2026-03-24 22:46:07] Set ATHENA_CORE_NUMBER=8
[2026-03-24 22:46:07] Starting ATLAS job with PandaID=7056950310
[2026-03-24 22:46:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11388200/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 00:13:15]  *** The last 200 lines of the pilot log: ***
[2026-03-25 00:13:15]  is_altstaged=None
[2026-03-25 00:13:15]  is_tar=False
[2026-03-25 00:13:15]  lfn=log.49176543._000100.job.log.tgz.1
[2026-03-25 00:13:15]  mtime=0
[2026-03-25 00:13:15]  protocol_id=None
[2026-03-25 00:13:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-25 00:13:15]  replicas=None
[2026-03-25 00:13:15]  scope=mc23_13p6TeV
[2026-03-25 00:13:15]  status=None
[2026-03-25 00:13:15]  status_code=0
[2026-03-25 00:13:15]  storage_token=
[2026-03-25 00:13:15]  surl=/tmp/job_11388200/atlas/pilot/slots/0/PanDA_Pilot-7056950310/log.49176543._000100.job.log.tgz.1
[2026-03-25 00:13:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/1b/log.49176543._000100.job.log.tgz.1
[2026-03-25 00:13:15]  workdir=None
[2026-03-25 00:13:15] ]
[2026-03-25 00:13:15] 2026-03-24 23:12:40,112 | INFO     | transferring file log.49176543._000100.job.log.tgz.1 from /tmp/job_11388200/atlas/pilot/slots/0/PanDA_Pilot-7056950310/log.49176543._000100.job.log.tgz.1 to /tmp/j
[2026-03-25 00:13:15] 2026-03-24 23:12:40,113 | INFO     | executing command: /usr/bin/env mv /tmp/job_11388200/atlas/pilot/slots/0/PanDA_Pilot-7056950310/log.49176543._000100.job.log.tgz.1 /tmp/job_11388200/atlas/pilot/sl
[2026-03-25 00:13:15] 2026-03-24 23:12:40,121 | INFO     | adding to output.list: log.49176543._000100.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/1b/log.49176543._000100.job.log.tg
[2026-03-25 00:13:15] 2026-03-24 23:12:40,122 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-25 00:13:15] 2026-03-24 23:12:40,122 | INFO     | summary of transferred files:
[2026-03-25 00:13:15] 2026-03-24 23:12:40,122 | INFO     |  -- lfn=log.49176543._000100.job.log.tgz.1, status_code=0, status=transferred
[2026-03-25 00:13:15] 2026-03-24 23:12:40,122 | INFO     | stage-out finished correctly
[2026-03-25 00:13:15] 2026-03-24 23:12:40,412 | INFO     | time since job start (5160s) is within the limit (345600.0s)
[2026-03-25 00:13:15] 2026-03-24 23:12:42,418 | INFO     | time since job start (5162s) is within the limit (345600.0s)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,333 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-25 00:13:15] 2026-03-24 23:12:43,380 | INFO     | job 7056950310 has state=finished
[2026-03-25 00:13:15] 2026-03-24 23:12:43,381 | INFO     | preparing for final server update for job 7056950310 in state='finished'
[2026-03-25 00:13:15] 2026-03-24 23:12:43,381 | INFO     | reading metadata from: /tmp/job_11388200/atlas/pilot/slots/0/PanDA_Pilot-7056950310/jobReport.json
[2026-03-25 00:13:15] 2026-03-24 23:12:43,382 | INFO     | added worker_node to metadata from /tmp/job_11388200/atlas/pilot/slots/0/workernode_map.json
[2026-03-25 00:13:15] 2026-03-24 23:12:43,382 | INFO     | this job has now completed (state=finished)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,382 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,382 | INFO     | log transfer has been attempted: DONE
[2026-03-25 00:13:15] 2026-03-24 23:12:43,382 | INFO     | job 7056950310 has finished - writing final server update
[2026-03-25 00:13:15] 2026-03-24 23:12:43,382 | INFO     | total number of processed events: 400 (read)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,400 | INFO     | using path: /tmp/job_11388200/atlas/pilot/slots/0/PanDA_Pilot-7056950310/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,401 | INFO     | extracted standard info from prmon json
[2026-03-25 00:13:15] 2026-03-24 23:12:43,401 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 00:13:15] 2026-03-24 23:12:43,401 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 00:13:15] 2026-03-24 23:12:43,401 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 00:13:15] 2026-03-24 23:12:43,401 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 00:13:15] 2026-03-24 23:12:43,402 | INFO     | fitting pss+swap vs Time
[2026-03-25 00:13:15] 2026-03-24 23:12:43,402 | INFO     | sum of square deviations: 147126479.5
[2026-03-25 00:13:15] 2026-03-24 23:12:43,402 | INFO     | sum of deviations: 105211488.49999991
[2026-03-25 00:13:15] 2026-03-24 23:12:43,402 | INFO     | mean x: 1774391470.5
[2026-03-25 00:13:15] 2026-03-24 23:12:43,402 | INFO     | mean y: 2531173.294871795
[2026-03-25 00:13:15] 2026-03-24 23:12:43,402 | INFO     | intersect: -1266352364.3759165
[2026-03-25 00:13:15] 2026-03-24 23:12:43,402 | INFO     | chi2: 0.015431278635843189
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | current memory leak: 0.72 B/s (using 78 data points, chi2=0.02)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | could have reported an average CPU frequency of 2380 MHz (6 samples)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | ..............................
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | . Timing measurements:
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | . get job = 0 s
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | . initial setup = 28 s
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | . payload setup = 3 s
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | . stage-in = 0 s
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | . payload execution = 5141 s
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | . stage-out = 0 s
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | . log creation = 0 s
[2026-03-25 00:13:15] 2026-03-24 23:12:43,403 | INFO     | ..............................
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | 
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | job summary report
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | --------------------------------------------------
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | PanDA job id: 7056950310
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | task id: 49176543
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | errors: (none)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | pilot state: finished 
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | transexitcode: 0
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | exeerrorcode: 0
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | exeerrordiag: 
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | exitcode: 0
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | exitmsg: OK
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | cpuconsumptiontime: 36547 s
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | nevents: 400
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | neventsw: 0
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | pid: 23271
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | pgrp: 23271
[2026-03-25 00:13:15] 2026-03-24 23:12:43,449 | INFO     | corecount: 8
[2026-03-25 00:13:15] 2026-03-24 23:12:43,450 | INFO     | event service: False
[2026-03-25 00:13:15] 2026-03-24 23:12:43,450 | INFO     | sizes: {0: 2279231, 1: 2280475, 12: 2280475, 5147: 2306986, 5148: 2316014, 5152: 2316392}
[2026-03-25 00:13:15] 2026-03-24 23:12:43,450 | INFO     | --------------------------------------------------
[2026-03-25 00:13:15] 2026-03-24 23:12:43,450 | INFO     | 
[2026-03-25 00:13:15] 2026-03-24 23:12:43,450 | INFO     | executing command: ls -lF /tmp/job_11388200/atlas/pilot/slots/0
[2026-03-25 00:13:15] 2026-03-24 23:12:43,459 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,459 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,459 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,459 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,459 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,459 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,459 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | job 7056950310 has completed (purged errors)
[2026-03-25 00:13:15] 2026-03-24 23:12:43,460 | INFO     | overall cleanup function is called
[2026-03-25 00:13:15] 2026-03-24 23:12:44,466 | INFO     | --- collectZombieJob: --- 10, [23271]
[2026-03-25 00:13:15] 2026-03-24 23:12:44,466 | INFO     | zombie collector waiting for pid 23271
[2026-03-25 00:13:15] 2026-03-24 23:12:44,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 00:13:15] 2026-03-24 23:12:44,466 | INFO     | collected zombie processes
[2026-03-25 00:13:15] 2026-03-24 23:12:44,466 | INFO     | will attempt to kill all subprocesses of pid=23271
[2026-03-25 00:13:15] 2026-03-24 23:12:44,582 | INFO     | process IDs to be killed: [23271] (in reverse order)
[2026-03-25 00:13:15] 2026-03-24 23:12:44,624 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 00:13:15] 2026-03-24 23:12:44,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 00:13:15] 2026-03-24 23:12:44,631 | INFO     | did not find any defunct processes belonging to 23271
[2026-03-25 00:13:15] 2026-03-24 23:12:44,634 | INFO     | did not find any defunct processes belonging to 23271
[2026-03-25 00:13:15] 2026-03-24 23:12:44,634 | INFO     | ready for new job
[2026-03-25 00:13:15] 2026-03-24 23:12:44,634 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 00:13:15] 2026-03-24 23:12:44,635 | INFO     | **************************************
[2026-03-25 00:13:15] 2026-03-24 23:12:44,635 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 00:13:15] 2026-03-24 23:12:44,635 | INFO     | **************************************
[2026-03-25 00:13:15] 2026-03-24 23:12:44,635 | INFO     | 
[2026-03-25 00:13:15] 2026-03-24 23:12:44,649 | INFO     | architecture information:
[2026-03-25 00:13:15] 2026-03-24 23:12:44,649 | INFO     | executing command: cat /etc/os-release
[2026-03-25 00:13:15] 2026-03-24 23:12:44,655 | INFO     | cat /etc/os-release:
[2026-03-25 00:13:15] NAME="CentOS Linux"
[2026-03-25 00:13:15] VERSION="7 (Core)"
[2026-03-25 00:13:15] ID="centos"
[2026-03-25 00:13:15] ID_LIKE="rhel fedora"
[2026-03-25 00:13:15] VERSION_ID="7"
[2026-03-25 00:13:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 00:13:15] ANSI_COLOR="0;31"
[2026-03-25 00:13:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 00:13:15] HOME_URL="https://www.centos.org/"
[2026-03-25 00:13:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 00:13:15] 
[2026-03-25 00:13:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 00:13:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 00:13:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 00:13:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 00:13:15] 
[2026-03-25 00:13:15] 2026-03-24 23:12:44,655 | INFO     | **************************************
[2026-03-25 00:13:15] 2026-03-24 23:12:45,158 | INFO     | executing command: df -mP /tmp/job_11388200/atlas/pilot/slots/0
[2026-03-25 00:13:15] 2026-03-24 23:12:45,163 | INFO     | sufficient remaining disk space (223425331200 B)
[2026-03-25 00:13:15] 2026-03-24 23:12:45,163 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 00:13:15] 2026-03-24 23:12:45,164 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 00:13:15] 2026-03-24 23:12:45,164 | INFO     | update_server=False
[2026-03-25 00:13:15] 2026-03-24 23:12:45,164 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 00:13:15] 2026-03-24 23:12:45,164 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 00:13:15] 2026-03-24 23:12:45,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 00:13:15] 2026-03-24 23:12:45,427 | INFO     | all data control threads have been joined
[2026-03-25 00:13:15] 2026-03-24 23:12:45,633 | WARNING  | process 23271 can no longer be monitored (due to stat problems) - aborting
[2026-03-25 00:13:15] 2026-03-24 23:12:45,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 00:13:15] 2026-03-24 23:12:45,705 | INFO     | all payload control threads have been joined
[2026-03-25 00:13:15] 2026-03-24 23:12:45,722 | INFO     | using path: /tmp/job_11388200/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 00:13:15] 2026-03-24 23:12:45,836 | INFO     | number of running child processes to parent process 23271: 1
[2026-03-25 00:13:15] 2026-03-24 23:12:45,836 | INFO     | maximum number of monitored processes: 6
[2026-03-25 00:13:15] 2026-03-24 23:12:45,836 | INFO     | aborting job monitoring since job object (job id=7056950310) has expired
[2026-03-25 00:13:15] 2026-03-24 23:12:45,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 00:13:15] 2026-03-24 23:12:45,836 | INFO     | will abort loop
[2026-03-25 00:13:15] 2026-03-24 23:12:46,169 | INFO     | [job] retrieve thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,169 | INFO     | [job] queue monitor thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,255 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,432 | INFO     | [data] control thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,704 | INFO     | [payload] validate_post thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,710 | INFO     | [payload] control thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,771 | INFO     | all job control threads have been joined
[2026-03-25 00:13:15] 2026-03-24 23:12:46,830 | INFO     | [payload] failed_post thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,841 | INFO     | [job] job monitor thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,851 | INFO     | [job] validate thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,887 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:46,945 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:47,438 | INFO     | [data] copytool_in thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:47,685 | INFO     | [data] copytool_out thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:47,776 | INFO     | [job] control thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:48,191 | INFO     | [monitor] cgroup control has ended
[2026-03-25 00:13:15] 2026-03-24 23:12:49,169 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:55,283 | INFO     | job.realtimelogging is not enabled
[2026-03-25 00:13:15] 2026-03-24 23:12:56,285 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 00:13:15] 2026-03-24 23:12:57,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067393280)>']
[2026-03-25 00:13:15] 2026-03-24 23:13:02,143 | INFO     | all workflow threads have been joined
[2026-03-25 00:13:15] 2026-03-24 23:13:02,143 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 00:13:15] 2026-03-24 23:13:02,144 | INFO     | traces error code: 0
[2026-03-25 00:13:15] 2026-03-24 23:13:02,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 00:13:15] 2026-03-24 23:13:15,629 | INFO     | PID=17567 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-25 00:13:15] 2026-03-24 23:13:15,629 | INFO     | .. there are 8 such processes running
[2026-03-25 00:13:15] 2026-03-24 23:13:15,629 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 00:13:15] 2026-03-24 23:13:15,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 00:13:15] 2026-03-24 23:13:15,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 00:13:15] 2026-03-24 23:13:15,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 00:13:15] 2026-03-24 23:13:15,629 | INFO     | [monitor] control thread has ended
[2026-03-25 00:13:15] 2026-03-24 23:13:15,684 [wrapper] ==== pilot stdout END ====
[2026-03-25 00:13:15] 2026-03-24 23:13:15,685 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 00:13:15] 2026-03-24 23:13:15,686 [wrapper] pilotpid: 17567
[2026-03-25 00:13:15] 2026-03-24 23:13:15,687 [wrapper] Pilot exit status: 0
[2026-03-25 00:13:15] 2026-03-24 23:13:15,691 [wrapper] pandaids: 7056950310
[2026-03-25 00:13:15] 2026-03-24 23:13:15,717 [wrapper] cleanup supervisor_pilot 11433 17568
[2026-03-25 00:13:15] 2026-03-24 23:13:15,718 [wrapper] Test setup, not cleaning
[2026-03-25 00:13:15] 2026-03-24 23:13:15,720 [wrapper] apfmon messages muted
[2026-03-25 00:13:15] 2026-03-24 23:13:15,721 [wrapper] ==== wrapper stdout END ====
[2026-03-25 00:13:15] 2026-03-24 23:13:15,722 [wrapper] ==== wrapper stderr END ====
[2026-03-25 00:13:15]  *** Error codes and diagnostics ***
[2026-03-25 00:13:15]     "exeErrorCode": 0,
[2026-03-25 00:13:15]     "exeErrorDiag": "",
[2026-03-25 00:13:15]     "pilotErrorCode": 0,
[2026-03-25 00:13:15]     "pilotErrorDiag": "",
[2026-03-25 00:13:15]  *** Listing of results directory ***
[2026-03-25 00:13:15] total 425280
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user    602624 Mar 10 17:47 pilot3.tar.gz
[2026-03-25 00:13:15] -rwx------ 1 mf493845 unix-user     36322 Mar 16 16:04 runpilot2-wrapper.sh
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user      5111 Mar 16 16:04 queuedata.json
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user       100 Mar 24 21:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 00:13:15] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 24 21:48 run_atlas
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user       105 Mar 24 21:48 job.xml
[2026-03-25 00:13:15] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 22:46 start_atlas.sh
[2026-03-25 00:13:15] drwxrwx--x 2 mf493845 unix-user       100 Mar 24 22:46 shared
[2026-03-25 00:13:15] -rw-r--r-- 2 mf493845 unix-user    616308 Mar 24 22:46 input.tar.gz
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user      6389 Mar 24 22:46 init_data.xml
[2026-03-25 00:13:15] -rw-r--r-- 2 mf493845 unix-user 227633590 Mar 24 22:46 EVNT.49134319._000004.pool.root.1
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user         0 Mar 24 22:46 boinc_setup_complete
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user      8192 Mar 24 22:46 boinc_mmap_file
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user         0 Mar 24 22:46 boinc_lockfile
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user      2626 Mar 24 22:46 pandaJob.out
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user   1010852 Mar 24 22:46 agis_schedconf.cvmfs.json
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user   1511579 Mar 24 22:46 agis_ddmendpoints.agis.ALL.json
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user       414 Mar 24 22:46 workernode_map.json
[2026-03-25 00:13:15] drwx------ 7 mf493845 unix-user       580 Mar 24 22:46 pilot3
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user 201649091 Mar 25 00:12 HITS.49176543._000100.pool.root.1
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user        95 Mar 25 00:12 pilot_heartbeat.json
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user      1013 Mar 25 00:12 memory_monitor_summary.json
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user    348118 Mar 25 00:12 log.49176543._000100.job.log.tgz.1
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user      6296 Mar 25 00:12 heartbeat.json
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user       820 Mar 25 00:13 pilotlog.txt
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user    778277 Mar 25 00:13 log.49176543._000100.job.log.1
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user       357 Mar 25 00:13 output.list
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user       620 Mar 25 00:13 runtime_log
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user   1146880 Mar 25 00:13 result.tar.gz
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user       646 Mar 25 00:13 YC6LDmvfOM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmNSuLDm42P7Un.diag
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user      9219 Mar 25 00:13 runtime_log.err
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user     21977 Mar 25 00:13 stderr.txt
[2026-03-25 00:13:15] HITS file was successfully produced:
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user 201649091 Mar 25 00:12 shared/HITS.pool.root.1
[2026-03-25 00:13:15]  *** Contents of shared directory: ***
[2026-03-25 00:13:15] total 420964
[2026-03-25 00:13:15] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 22:46 start_atlas.sh
[2026-03-25 00:13:15] -rw-r--r-- 2 mf493845 unix-user    616308 Mar 24 22:46 input.tar.gz
[2026-03-25 00:13:15] -rw-r--r-- 2 mf493845 unix-user 227633590 Mar 24 22:46 ATLAS.root_0
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user 201649091 Mar 25 00:12 HITS.pool.root.1
[2026-03-25 00:13:15] -rw------- 1 mf493845 unix-user   1146880 Mar 25 00:13 result.tar.gz
00:13:17 (7983): run_atlas exited; CPU time 36632.394347
00:13:17 (7983): called boinc_finish(0)

</stderr_txt>
]]>

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