Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:24:53 (16053): wrapper (7.7.26015): starting
23:24:53 (16053): wrapper: running run_atlas (--nthreads 8)
[2026-03-24 23:24:53] Arguments: --nthreads 8
[2026-03-24 23:24:53] Threads: 8
[2026-03-24 23:24:53] Checking for CVMFS
[2026-03-24 23:24:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 23:24:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 23:24:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 23:24:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 23:24:54] 2.11.0.0 10154 236192 113044 157660 3 188 3739868 4096001 2698 130560 4 14156476 99.600 12620746 375 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-24 23:24:54] CVMFS is ok
[2026-03-24 23:24:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 23:24:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 23:24:54] Further information can be found at the LHC@home message board.
[2026-03-24 23:24:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 23:24:54] Checking for apptainer binary...
[2026-03-24 23:24:54] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-24 23:24:54] apptainer is not installed, using version from CVMFS
[2026-03-24 23:24:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 23:24:54] WARNING: Environment variable TMPDIR already has value [/tmp/job_11388611/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node189
[2026-03-24 23:24:54] apptainer works
[2026-03-24 23:24:54] Set ATHENA_PROC_NUMBER=8
[2026-03-24 23:24:54] Set ATHENA_CORE_NUMBER=8
[2026-03-24 23:24:54] Starting ATLAS job with PandaID=7056955584
[2026-03-24 23:24:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11388611/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 00:46:14]  *** The last 200 lines of the pilot log: ***
[2026-03-25 00:46:14]  lfn=log.49179572._000074.job.log.tgz.1
[2026-03-25 00:46:14]  mtime=0
[2026-03-25 00:46:14]  protocol_id=None
[2026-03-25 00:46:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-25 00:46:14]  replicas=None
[2026-03-25 00:46:14]  scope=mc23_13p6TeV
[2026-03-25 00:46:14]  status=None
[2026-03-25 00:46:14]  status_code=0
[2026-03-25 00:46:14]  storage_token=
[2026-03-25 00:46:14]  surl=/tmp/job_11388611/atlas/pilot/slots/0/PanDA_Pilot-7056955584/log.49179572._000074.job.log.tgz.1
[2026-03-25 00:46:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/c9/log.49179572._000074.job.log.tgz.1
[2026-03-25 00:46:14]  workdir=None
[2026-03-25 00:46:14] ]
[2026-03-25 00:46:14] 2026-03-24 23:45:05,674 | INFO     | transferring file log.49179572._000074.job.log.tgz.1 from /tmp/job_11388611/atlas/pilot/slots/0/PanDA_Pilot-7056955584/log.49179572._000074.job.log.tgz.1 to /tmp/j
[2026-03-25 00:46:14] 2026-03-24 23:45:05,674 | INFO     | executing command: /usr/bin/env mv /tmp/job_11388611/atlas/pilot/slots/0/PanDA_Pilot-7056955584/log.49179572._000074.job.log.tgz.1 /tmp/job_11388611/atlas/pilot/sl
[2026-03-25 00:46:14] 2026-03-24 23:45:05,682 | INFO     | adding to output.list: log.49179572._000074.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/c9/log.49179572._000074.job.log.tg
[2026-03-25 00:46:14] 2026-03-24 23:45:05,682 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-25 00:46:14] 2026-03-24 23:45:05,682 | INFO     | summary of transferred files:
[2026-03-25 00:46:14] 2026-03-24 23:45:05,682 | INFO     |  -- lfn=log.49179572._000074.job.log.tgz.1, status_code=0, status=transferred
[2026-03-25 00:46:14] 2026-03-24 23:45:05,682 | INFO     | stage-out finished correctly
[2026-03-25 00:46:14] 2026-03-24 23:45:06,495 | INFO     | time since job start (4805s) is within the limit (345600.0s)
[2026-03-25 00:46:14] 2026-03-24 23:45:06,927 | WARNING  | process 24419 can no longer be monitored (due to stat problems) - aborting
[2026-03-25 00:46:14] 2026-03-24 23:45:06,927 | INFO     | using path: /tmp/job_11388611/atlas/pilot/slots/0/PanDA_Pilot-7056955584/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 00:46:14] 2026-03-24 23:45:07,030 | INFO     | number of running child processes to parent process 24419: 1
[2026-03-25 00:46:14] 2026-03-24 23:45:07,030 | INFO     | maximum number of monitored processes: 6
[2026-03-25 00:46:14] 2026-03-24 23:45:08,501 | INFO     | time since job start (4807s) is within the limit (345600.0s)
[2026-03-25 00:46:14] 2026-03-24 23:45:08,638 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-25 00:46:14] 2026-03-24 23:45:09,533 | INFO     | monitor loop #361: job 0:7056955584 is in state 'finished'
[2026-03-25 00:46:14] 2026-03-24 23:45:09,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-25 00:46:14] 2026-03-24 23:45:10,506 | INFO     | time since job start (4809s) is within the limit (345600.0s)
[2026-03-25 00:46:14] 2026-03-24 23:45:10,981 | INFO     | job 7056955584 has state=finished
[2026-03-25 00:46:14] 2026-03-24 23:45:10,981 | INFO     | preparing for final server update for job 7056955584 in state='finished'
[2026-03-25 00:46:14] 2026-03-24 23:45:10,981 | INFO     | reading metadata from: /tmp/job_11388611/atlas/pilot/slots/0/PanDA_Pilot-7056955584/jobReport.json
[2026-03-25 00:46:14] 2026-03-24 23:45:10,982 | INFO     | added worker_node to metadata from /tmp/job_11388611/atlas/pilot/slots/0/workernode_map.json
[2026-03-25 00:46:14] 2026-03-24 23:45:10,983 | INFO     | this job has now completed (state=finished)
[2026-03-25 00:46:14] 2026-03-24 23:45:10,983 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-25 00:46:14] 2026-03-24 23:45:10,983 | INFO     | log transfer has been attempted: DONE
[2026-03-25 00:46:14] 2026-03-24 23:45:10,983 | INFO     | job 7056955584 has finished - writing final server update
[2026-03-25 00:46:14] 2026-03-24 23:45:10,983 | INFO     | total number of processed events: 400 (read)
[2026-03-25 00:46:14] 2026-03-24 23:45:11,001 | INFO     | using path: /tmp/job_11388611/atlas/pilot/slots/0/PanDA_Pilot-7056955584/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 00:46:14] 2026-03-24 23:45:11,001 | INFO     | extracted standard info from prmon json
[2026-03-25 00:46:14] 2026-03-24 23:45:11,001 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 00:46:14] 2026-03-24 23:45:11,001 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 00:46:14] 2026-03-24 23:45:11,001 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 00:46:14] 2026-03-24 23:45:11,001 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 00:46:14] 2026-03-24 23:45:11,002 | INFO     | fitting pss+swap vs Time
[2026-03-25 00:46:14] 2026-03-24 23:45:11,002 | INFO     | sum of square deviations: 115715658.0
[2026-03-25 00:46:14] 2026-03-24 23:45:11,002 | INFO     | sum of deviations: -1331290138.4999995
[2026-03-25 00:46:14] 2026-03-24 23:45:11,002 | INFO     | mean x: 1774393588.5
[2026-03-25 00:46:14] 2026-03-24 23:45:11,002 | INFO     | mean y: 2547829.402777778
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | intersect: 20416662280.42786
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | chi2: 0.0038564774765397335
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | current memory leak: -11.50 B/s (using 72 data points, chi2=0.00)
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | could have reported an average CPU frequency of 2515 MHz (6 samples)
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | ..............................
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | . Timing measurements:
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | . get job = 0 s
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | . initial setup = 2 s
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | . payload setup = 3 s
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | . stage-in = 0 s
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | . payload execution = 4785 s
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | . stage-out = 0 s
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | . log creation = 0 s
[2026-03-25 00:46:14] 2026-03-24 23:45:11,003 | INFO     | ..............................
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | 
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | job summary report
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | --------------------------------------------------
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | PanDA job id: 7056955584
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | task id: 49179572
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | errors: (none)
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | pilot state: finished 
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | transexitcode: 0
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | exeerrorcode: 0
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | exeerrordiag: 
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | exitcode: 0
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | exitmsg: OK
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | cpuconsumptiontime: 35625 s
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | nevents: 400
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | neventsw: 0
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | pid: 24419
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | pgrp: 24419
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | corecount: 8
[2026-03-25 00:46:14] 2026-03-24 23:45:11,051 | INFO     | event service: False
[2026-03-25 00:46:14] 2026-03-24 23:45:11,052 | INFO     | sizes: {0: 2280164, 1: 2280454, 11: 2280454, 4793: 2306848, 4794: 2315876, 4797: 2315932, 4799: 2316254}
[2026-03-25 00:46:14] 2026-03-24 23:45:11,052 | INFO     | --------------------------------------------------
[2026-03-25 00:46:14] 2026-03-24 23:45:11,052 | INFO     | 
[2026-03-25 00:46:14] 2026-03-24 23:45:11,052 | INFO     | executing command: ls -lF /tmp/job_11388611/atlas/pilot/slots/0
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 00:46:14] 2026-03-24 23:45:11,062 | INFO     | job 7056955584 has completed (purged errors)
[2026-03-25 00:46:14] 2026-03-24 23:45:11,063 | INFO     | overall cleanup function is called
[2026-03-25 00:46:14] 2026-03-24 23:45:12,068 | INFO     | --- collectZombieJob: --- 10, [24419]
[2026-03-25 00:46:14] 2026-03-24 23:45:12,068 | INFO     | zombie collector waiting for pid 24419
[2026-03-25 00:46:14] 2026-03-24 23:45:12,069 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 00:46:14] 2026-03-24 23:45:12,069 | INFO     | collected zombie processes
[2026-03-25 00:46:14] 2026-03-24 23:45:12,069 | INFO     | will attempt to kill all subprocesses of pid=24419
[2026-03-25 00:46:14] 2026-03-24 23:45:12,173 | INFO     | process IDs to be killed: [24419] (in reverse order)
[2026-03-25 00:46:14] 2026-03-24 23:45:12,213 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 00:46:14] 2026-03-24 23:45:12,213 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 00:46:14] 2026-03-24 23:45:12,217 | INFO     | did not find any defunct processes belonging to 24419
[2026-03-25 00:46:14] 2026-03-24 23:45:12,220 | INFO     | did not find any defunct processes belonging to 24419
[2026-03-25 00:46:14] 2026-03-24 23:45:12,220 | INFO     | ready for new job
[2026-03-25 00:46:14] 2026-03-24 23:45:12,220 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 00:46:14] 2026-03-24 23:45:12,221 | INFO     | **************************************
[2026-03-25 00:46:14] 2026-03-24 23:45:12,221 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 00:46:14] 2026-03-24 23:45:12,221 | INFO     | **************************************
[2026-03-25 00:46:14] 2026-03-24 23:45:12,221 | INFO     | 
[2026-03-25 00:46:14] 2026-03-24 23:45:12,235 | INFO     | architecture information:
[2026-03-25 00:46:14] 2026-03-24 23:45:12,235 | INFO     | executing command: cat /etc/os-release
[2026-03-25 00:46:14] 2026-03-24 23:45:12,243 | INFO     | cat /etc/os-release:
[2026-03-25 00:46:14] NAME="CentOS Linux"
[2026-03-25 00:46:14] VERSION="7 (Core)"
[2026-03-25 00:46:14] ID="centos"
[2026-03-25 00:46:14] ID_LIKE="rhel fedora"
[2026-03-25 00:46:14] VERSION_ID="7"
[2026-03-25 00:46:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 00:46:14] ANSI_COLOR="0;31"
[2026-03-25 00:46:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 00:46:14] HOME_URL="https://www.centos.org/"
[2026-03-25 00:46:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 00:46:14] 
[2026-03-25 00:46:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 00:46:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 00:46:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 00:46:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 00:46:14] 
[2026-03-25 00:46:14] 2026-03-24 23:45:12,243 | INFO     | **************************************
[2026-03-25 00:46:14] 2026-03-24 23:45:12,746 | INFO     | executing command: df -mP /tmp/job_11388611/atlas/pilot/slots/0
[2026-03-25 00:46:14] 2026-03-24 23:45:12,752 | INFO     | sufficient remaining disk space (223845810176 B)
[2026-03-25 00:46:14] 2026-03-24 23:45:12,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 00:46:14] 2026-03-24 23:45:12,752 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 00:46:14] 2026-03-24 23:45:12,752 | INFO     | update_server=False
[2026-03-25 00:46:14] 2026-03-24 23:45:12,752 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 00:46:14] 2026-03-24 23:45:12,752 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 00:46:14] 2026-03-24 23:45:12,801 | INFO     | all job control threads have been joined
[2026-03-25 00:46:14] 2026-03-24 23:45:13,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 00:46:14] 2026-03-24 23:45:13,041 | INFO     | aborting loop
[2026-03-25 00:46:14] 2026-03-24 23:45:13,392 | INFO     | all data control threads have been joined
[2026-03-25 00:46:14] 2026-03-24 23:45:13,742 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 00:46:14] 2026-03-24 23:45:13,757 | INFO     | [job] retrieve thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:13,757 | INFO     | [job] queue monitor thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:13,806 | INFO     | [job] control thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:13,842 | INFO     | [payload] failed_post thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:13,864 | INFO     | all payload control threads have been joined
[2026-03-25 00:46:14] 2026-03-24 23:45:14,046 | INFO     | [job] job monitor thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:14,254 | INFO     | [payload] validate_post thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:14,397 | INFO     | [data] control thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:14,564 | INFO     | [job] validate thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:14,647 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:14,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 00:46:14] 2026-03-24 23:45:14,791 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:14,869 | INFO     | [payload] control thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:14,953 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:15,054 | INFO     | [data] copytool_in thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:15,748 | INFO     | [data] copytool_out thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:18,695 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:23,667 | INFO     | job.realtimelogging is not enabled
[2026-03-25 00:46:14] 2026-03-24 23:45:24,673 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 00:46:14] 2026-03-24 23:45:43,697 | INFO     | PID=19804 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-25 00:46:14] 2026-03-24 23:45:43,697 | INFO     | .. there are 6 such processes running
[2026-03-25 00:46:14] 2026-03-24 23:45:43,697 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 00:46:14] 2026-03-24 23:45:43,697 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 00:46:14] 2026-03-24 23:45:43,697 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 00:46:14] 2026-03-24 23:46:08,594 | INFO     | [monitor] cgroup control has ended
[2026-03-25 00:46:14] 2026-03-24 23:46:08,808 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-25 00:46:14] 2026-03-24 23:46:08,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 00:46:14] 2026-03-24 23:46:08,820 | INFO     | [monitor] control thread has ended
[2026-03-25 00:46:14] 2026-03-24 23:46:13,833 | INFO     | all workflow threads have been joined
[2026-03-25 00:46:14] 2026-03-24 23:46:13,833 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 00:46:14] 2026-03-24 23:46:13,833 | INFO     | traces error code: 0
[2026-03-25 00:46:14] 2026-03-24 23:46:13,833 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 00:46:14] 2026-03-24 23:46:13,884 [wrapper] ==== pilot stdout END ====
[2026-03-25 00:46:14] 2026-03-24 23:46:13,885 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 00:46:14] 2026-03-24 23:46:13,887 [wrapper] pilotpid: 19804
[2026-03-25 00:46:14] 2026-03-24 23:46:13,888 [wrapper] Pilot exit status: 0
[2026-03-25 00:46:14] 2026-03-24 23:46:13,892 [wrapper] pandaids: 7056955584
[2026-03-25 00:46:14] 2026-03-24 23:46:13,917 [wrapper] cleanup supervisor_pilot  1156 19805
[2026-03-25 00:46:14] 2026-03-24 23:46:13,918 [wrapper] Test setup, not cleaning
[2026-03-25 00:46:14] 2026-03-24 23:46:13,919 [wrapper] apfmon messages muted
[2026-03-25 00:46:14] 2026-03-24 23:46:13,921 [wrapper] ==== wrapper stdout END ====
[2026-03-25 00:46:14] 2026-03-24 23:46:13,922 [wrapper] ==== wrapper stderr END ====
[2026-03-25 00:46:14]  *** Error codes and diagnostics ***
[2026-03-25 00:46:14]     "exeErrorCode": 0,
[2026-03-25 00:46:14]     "exeErrorDiag": "",
[2026-03-25 00:46:14]     "pilotErrorCode": 0,
[2026-03-25 00:46:14]     "pilotErrorDiag": "",
[2026-03-25 00:46:14]  *** Listing of results directory ***
[2026-03-25 00:46:14] total 441892
[2026-03-25 00:46:14] -rwx------ 1 mf493845 unix-user     36322 Mar 16 16:26 runpilot2-wrapper.sh
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user      5111 Mar 16 16:28 queuedata.json
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user    585013 Mar 16 16:28 pilot3.tar.gz
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user       100 Mar 24 22:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 00:46:14] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 24 22:24 run_atlas
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user       105 Mar 24 22:24 job.xml
[2026-03-25 00:46:14] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 23:24 start_atlas.sh
[2026-03-25 00:46:14] drwxrwx--x 2 mf493845 unix-user       100 Mar 24 23:24 shared
[2026-03-25 00:46:14] -rw-r--r-- 2 mf493845 unix-user    597531 Mar 24 23:24 input.tar.gz
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user      6391 Mar 24 23:24 init_data.xml
[2026-03-25 00:46:14] -rw-r--r-- 2 mf493845 unix-user 235754875 Mar 24 23:24 EVNT.49131779._000003.pool.root.1
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user         0 Mar 24 23:24 boinc_setup_complete
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user      8192 Mar 24 23:24 boinc_mmap_file
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user         0 Mar 24 23:24 boinc_lockfile
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user      2613 Mar 24 23:24 pandaJob.out
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user   1010852 Mar 24 23:24 agis_schedconf.cvmfs.json
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user   1511579 Mar 24 23:24 agis_ddmendpoints.agis.ALL.json
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user       420 Mar 24 23:25 workernode_map.json
[2026-03-25 00:46:14] drwx------ 5 mf493845 unix-user       440 Mar 24 23:25 pilot3
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user 210692059 Mar 25 00:44 HITS.49179572._000074.pool.root.1
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user      1014 Mar 25 00:45 memory_monitor_summary.json
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user    341710 Mar 25 00:45 log.49179572._000074.job.log.tgz.1
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user        95 Mar 25 00:45 pilot_heartbeat.json
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user      6297 Mar 25 00:45 heartbeat.json
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user      4903 Mar 25 00:46 pilotlog.txt
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user    726475 Mar 25 00:46 log.49179572._000074.job.log.1
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user       357 Mar 25 00:46 output.list
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user       620 Mar 25 00:46 runtime_log
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user   1085440 Mar 25 00:46 result.tar.gz
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user      9219 Mar 25 00:46 runtime_log.err
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user       642 Mar 25 00:46 6CQODmB1OM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmU4xLDmsH0iwn.diag
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user     22191 Mar 25 00:46 stderr.txt
[2026-03-25 00:46:14] HITS file was successfully produced:
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user 210692059 Mar 25 00:44 shared/HITS.pool.root.1
[2026-03-25 00:46:14]  *** Contents of shared directory: ***
[2026-03-25 00:46:14] total 437648
[2026-03-25 00:46:14] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 23:24 start_atlas.sh
[2026-03-25 00:46:14] -rw-r--r-- 2 mf493845 unix-user    597531 Mar 24 23:24 input.tar.gz
[2026-03-25 00:46:14] -rw-r--r-- 2 mf493845 unix-user 235754875 Mar 24 23:24 ATLAS.root_0
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user 210692059 Mar 25 00:44 HITS.pool.root.1
[2026-03-25 00:46:14] -rw------- 1 mf493845 unix-user   1085440 Mar 25 00:46 result.tar.gz
00:46:15 (16053): run_atlas exited; CPU time 35699.218730
00:46:15 (16053): called boinc_finish(0)

</stderr_txt>
]]>

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