Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:06:44 (22888): wrapper (7.7.26015): starting
23:06:44 (22888): wrapper: running run_atlas (--nthreads 8)
[2026-03-24 23:06:44] Arguments: --nthreads 8
[2026-03-24 23:06:44] Threads: 8
[2026-03-24 23:06:44] Checking for CVMFS
[2026-03-24 23:06:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 23:06:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 23:06:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 23:06:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 23:06:44] 2.11.0.0 5757 29492 61572 157658 1 188 2651562 4096001 3606 130560 0 3847932 99.733 1786131 266 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-24 23:06:44] CVMFS is ok
[2026-03-24 23:06:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 23:06:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 23:06:44] Further information can be found at the LHC@home message board.
[2026-03-24 23:06:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 23:06:44] Checking for apptainer binary...
[2026-03-24 23:06:44] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-24 23:06:44] apptainer is not installed, using version from CVMFS
[2026-03-24 23:06:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 23:06:44] WARNING: Environment variable TMPDIR already has value [/tmp/job_11388397/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node053
[2026-03-24 23:06:44] apptainer works
[2026-03-24 23:06:44] Set ATHENA_PROC_NUMBER=8
[2026-03-24 23:06:44] Set ATHENA_CORE_NUMBER=8
[2026-03-24 23:06:44] Starting ATLAS job with PandaID=7056959135
[2026-03-24 23:06:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11388397/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 00:53:11]  *** The last 200 lines of the pilot log: ***
[2026-03-25 00:53:11] 2026-03-24 23:52:16,679 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,679 | INFO     | log transfer has been attempted: DONE
[2026-03-25 00:53:11] 2026-03-24 23:52:16,679 | INFO     | job 7056959135 has finished - writing final server update
[2026-03-25 00:53:11] 2026-03-24 23:52:16,679 | INFO     | total number of processed events: 400 (read)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,697 | INFO     | using path: /tmp/job_11388397/atlas/pilot/slots/0/PanDA_Pilot-7056959135/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,697 | INFO     | extracted standard info from prmon json
[2026-03-25 00:53:11] 2026-03-24 23:52:16,697 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 00:53:11] 2026-03-24 23:52:16,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 00:53:11] 2026-03-24 23:52:16,698 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 00:53:11] 2026-03-24 23:52:16,698 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 00:53:11] 2026-03-24 23:52:16,699 | INFO     | fitting pss+swap vs Time
[2026-03-25 00:53:11] 2026-03-24 23:52:16,699 | INFO     | sum of square deviations: 348769330.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,699 | INFO     | sum of deviations: 6099451610.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,699 | INFO     | mean x: 1774393172.5
[2026-03-25 00:53:11] 2026-03-24 23:52:16,699 | INFO     | mean y: 2475661.7115384615
[2026-03-25 00:53:11] 2026-03-24 23:52:16,699 | INFO     | intersect: -31028995175.41205
[2026-03-25 00:53:11] 2026-03-24 23:52:16,699 | INFO     | chi2: 1.789160251888251
[2026-03-25 00:53:11] 2026-03-24 23:52:16,699 | INFO     | sum of square deviations: 300842850.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | sum of deviations: 11943017797.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | mean x: 1774393020.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | mean y: 2493446.606060606
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | intersect: -70438294548.62991
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | chi2: 1.1041664776513263
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | current chi2=1.1041664776513263 (change=38.28576973549425 %)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | sum of square deviations: 257521107.5
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | sum of deviations: 11185736591.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | mean x: 1774392867.5
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | mean y: 2490780.3829787234
[2026-03-25 00:53:11] 2026-03-24 23:52:16,700 | INFO     | intersect: -77070380711.53606
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | chi2: 1.1060225565475925
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | current chi2=1.1060225565475925 (change=-0.16809774013555764 %)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | right removable region: 93
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | sum of square deviations: 300842850.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | sum of deviations: -4839513446.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | mean x: 1774393325.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | mean y: 2509416.9696969697
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | intersect: 28546316772.970177
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | chi2: 0.7123694170288933
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | current chi2=0.7123694170288933 (change=60.184146932782 %)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,701 | INFO     | sum of square deviations: 257521107.5
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | sum of deviations: -4598762031.5
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | mean x: 1774393477.5
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | mean y: 2508579.6914893617
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | intersect: 31689283432.77125
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | chi2: 0.7130434029121749
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | current chi2=0.7130434029121749 (change=-0.09461184985911124 %)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | left removable region: 20
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | sum of square deviations: 120605052.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | sum of deviations: 307818444.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | mean x: 1774393447.0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | mean y: 2532811.4520547944
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | intersect: -4526224656.347358
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | chi2: 0.0003134470955593005
[2026-03-25 00:53:11] 2026-03-24 23:52:16,702 | INFO     | current memory leak: 2.55 B/s (using 73 data points, chi2=0.00)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | could have reported an average CPU frequency of 2659 MHz (7 samples)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | ..............................
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | . Timing measurements:
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | . get job = 0 s
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | . initial setup = 2 s
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | . payload setup = 3 s
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | . stage-in = 0 s
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | . payload execution = 6301 s
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | . stage-out = 0 s
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | . log creation = 0 s
[2026-03-25 00:53:11] 2026-03-24 23:52:16,703 | INFO     | ..............................
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | 
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | job summary report
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | --------------------------------------------------
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | PanDA job id: 7056959135
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | task id: 49179817
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | errors: (none)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | pilot state: finished 
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | transexitcode: 0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | exeerrorcode: 0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | exeerrordiag: 
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | exitcode: 0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,751 | INFO     | exitmsg: OK
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | cpuconsumptiontime: 46876 s
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | nevents: 400
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | neventsw: 0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | pid: 1180
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | pgrp: 1180
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | corecount: 8
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | event service: False
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | sizes: {0: 2279943, 1: 2280458, 11: 2280458, 6308: 2307605, 6310: 2316633, 6311: 2317039}
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | --------------------------------------------------
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | 
[2026-03-25 00:53:11] 2026-03-24 23:52:16,752 | INFO     | executing command: ls -lF /tmp/job_11388397/atlas/pilot/slots/0
[2026-03-25 00:53:11] 2026-03-24 23:52:16,761 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,761 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,761 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | job 7056959135 has completed (purged errors)
[2026-03-25 00:53:11] 2026-03-24 23:52:16,762 | INFO     | overall cleanup function is called
[2026-03-25 00:53:11] 2026-03-24 23:52:17,768 | INFO     | --- collectZombieJob: --- 10, [1180]
[2026-03-25 00:53:11] 2026-03-24 23:52:17,768 | INFO     | zombie collector waiting for pid 1180
[2026-03-25 00:53:11] 2026-03-24 23:52:17,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 00:53:11] 2026-03-24 23:52:17,768 | INFO     | collected zombie processes
[2026-03-25 00:53:11] 2026-03-24 23:52:17,768 | INFO     | will attempt to kill all subprocesses of pid=1180
[2026-03-25 00:53:11] 2026-03-24 23:52:17,869 | INFO     | process IDs to be killed: [1180] (in reverse order)
[2026-03-25 00:53:11] 2026-03-24 23:52:17,905 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 00:53:11] 2026-03-24 23:52:17,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 00:53:11] 2026-03-24 23:52:17,908 | INFO     | did not find any defunct processes belonging to 1180
[2026-03-25 00:53:11] 2026-03-24 23:52:17,911 | INFO     | did not find any defunct processes belonging to 1180
[2026-03-25 00:53:11] 2026-03-24 23:52:17,911 | INFO     | ready for new job
[2026-03-25 00:53:11] 2026-03-24 23:52:17,912 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 00:53:11] 2026-03-24 23:52:17,912 | INFO     | **************************************
[2026-03-25 00:53:11] 2026-03-24 23:52:17,912 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 00:53:11] 2026-03-24 23:52:17,912 | INFO     | **************************************
[2026-03-25 00:53:11] 2026-03-24 23:52:17,912 | INFO     | 
[2026-03-25 00:53:11] 2026-03-24 23:52:17,927 | INFO     | architecture information:
[2026-03-25 00:53:11] 2026-03-24 23:52:17,927 | INFO     | executing command: cat /etc/os-release
[2026-03-25 00:53:11] 2026-03-24 23:52:17,933 | INFO     | cat /etc/os-release:
[2026-03-25 00:53:11] NAME="CentOS Linux"
[2026-03-25 00:53:11] VERSION="7 (Core)"
[2026-03-25 00:53:11] ID="centos"
[2026-03-25 00:53:11] ID_LIKE="rhel fedora"
[2026-03-25 00:53:11] VERSION_ID="7"
[2026-03-25 00:53:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 00:53:11] ANSI_COLOR="0;31"
[2026-03-25 00:53:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 00:53:11] HOME_URL="https://www.centos.org/"
[2026-03-25 00:53:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 00:53:11] 
[2026-03-25 00:53:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 00:53:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 00:53:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 00:53:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 00:53:11] 
[2026-03-25 00:53:11] 2026-03-24 23:52:17,933 | INFO     | **************************************
[2026-03-25 00:53:11] 2026-03-24 23:52:18,435 | INFO     | executing command: df -mP /tmp/job_11388397/atlas/pilot/slots/0
[2026-03-25 00:53:11] 2026-03-24 23:52:18,442 | INFO     | sufficient remaining disk space (226060402688 B)
[2026-03-25 00:53:11] 2026-03-24 23:52:18,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 00:53:11] 2026-03-24 23:52:18,442 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 00:53:11] 2026-03-24 23:52:18,442 | INFO     | update_server=False
[2026-03-25 00:53:11] 2026-03-24 23:52:18,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 00:53:11] 2026-03-24 23:52:18,442 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 00:53:11] 2026-03-24 23:52:18,442 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 00:53:11] 2026-03-24 23:52:18,442 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 00:53:11] 2026-03-24 23:52:18,579 | INFO     | all job control threads have been joined
[2026-03-25 00:53:11] 2026-03-24 23:52:19,237 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 00:53:11] 2026-03-24 23:52:19,238 | INFO     | aborting loop
[2026-03-25 00:53:11] 2026-03-24 23:52:19,244 | INFO     | all data control threads have been joined
[2026-03-25 00:53:11] 2026-03-24 23:52:19,447 | INFO     | [job] retrieve thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:19,447 | INFO     | [job] queue monitor thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:19,584 | INFO     | [job] control thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:19,658 | INFO     | [payload] validate_post thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:19,725 | INFO     | all payload control threads have been joined
[2026-03-25 00:53:11] 2026-03-24 23:52:19,832 | INFO     | [job] validate thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:19,991 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:20,102 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:20,129 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:20,166 | INFO     | [data] copytool_in thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:20,243 | INFO     | [job] job monitor thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:20,249 | INFO     | [data] control thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:20,448 | INFO     | [data] copytool_out thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:20,730 | INFO     | [payload] control thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:20,770 | INFO     | [payload] failed_post thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:20,815 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:22,448 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 00:53:11] 2026-03-24 23:52:48,413 | INFO     | PID=27732 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-25 00:53:11] 2026-03-24 23:52:48,413 | INFO     | .. there are 4 such processes running
[2026-03-25 00:53:11] 2026-03-24 23:52:48,414 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 00:53:11] 2026-03-24 23:52:48,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 00:53:11] 2026-03-24 23:52:48,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 00:53:11] 2026-03-24 23:53:04,670 | INFO     | [monitor] cgroup control has ended
[2026-03-25 00:53:11] 2026-03-24 23:53:05,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-03-25 00:53:11] 2026-03-24 23:53:06,504 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 00:53:11] 2026-03-24 23:53:06,504 | INFO     | [monitor] control thread has ended
[2026-03-25 00:53:11] 2026-03-24 23:53:10,874 | INFO     | all workflow threads have been joined
[2026-03-25 00:53:11] 2026-03-24 23:53:10,874 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 00:53:11] 2026-03-24 23:53:10,874 | INFO     | traces error code: 0
[2026-03-25 00:53:11] 2026-03-24 23:53:10,874 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 00:53:11] 2026-03-24 23:53:10,928 [wrapper] ==== pilot stdout END ====
[2026-03-25 00:53:11] 2026-03-24 23:53:10,929 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 00:53:11] 2026-03-24 23:53:10,931 [wrapper] pilotpid: 27732
[2026-03-25 00:53:11] 2026-03-24 23:53:10,932 [wrapper] Pilot exit status: 0
[2026-03-25 00:53:11] 2026-03-24 23:53:10,936 [wrapper] pandaids: 7056959135
[2026-03-25 00:53:11] 2026-03-24 23:53:10,957 [wrapper] cleanup supervisor_pilot 16264 27733
[2026-03-25 00:53:11] 2026-03-24 23:53:10,959 [wrapper] Test setup, not cleaning
[2026-03-25 00:53:11] 2026-03-24 23:53:10,960 [wrapper] apfmon messages muted
[2026-03-25 00:53:11] 2026-03-24 23:53:10,961 [wrapper] ==== wrapper stdout END ====
[2026-03-25 00:53:11] 2026-03-24 23:53:10,962 [wrapper] ==== wrapper stderr END ====
[2026-03-25 00:53:11]  *** Error codes and diagnostics ***
[2026-03-25 00:53:11]     "exeErrorCode": 0,
[2026-03-25 00:53:11]     "exeErrorDiag": "",
[2026-03-25 00:53:11]     "pilotErrorCode": 0,
[2026-03-25 00:53:11]     "pilotErrorDiag": "",
[2026-03-25 00:53:11]  *** Listing of results directory ***
[2026-03-25 00:53:11] total 471644
[2026-03-25 00:53:11] -rwx------ 1 mf493845 unix-user     36322 Mar 16 16:27 runpilot2-wrapper.sh
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user    585013 Mar 16 16:28 pilot3.tar.gz
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user      5111 Mar 16 16:30 queuedata.json
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user       100 Mar 24 22:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 00:53:11] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 24 22:05 run_atlas
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user       105 Mar 24 22:05 job.xml
[2026-03-25 00:53:11] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 23:06 start_atlas.sh
[2026-03-25 00:53:11] drwxrwx--x 2 mf493845 unix-user       100 Mar 24 23:06 shared
[2026-03-25 00:53:11] -rw-r--r-- 2 mf493845 unix-user    597544 Mar 24 23:06 input.tar.gz
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user      6390 Mar 24 23:06 init_data.xml
[2026-03-25 00:53:11] -rw-r--r-- 2 mf493845 unix-user 239793806 Mar 24 23:06 EVNT.49132241._000007.pool.root.1
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user         0 Mar 24 23:06 boinc_setup_complete
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user      8192 Mar 24 23:06 boinc_mmap_file
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user         0 Mar 24 23:06 boinc_lockfile
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user      2615 Mar 24 23:06 pandaJob.out
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user   1010852 Mar 24 23:06 agis_schedconf.cvmfs.json
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user   1511579 Mar 24 23:06 agis_ddmendpoints.agis.ALL.json
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user       413 Mar 24 23:06 workernode_map.json
[2026-03-25 00:53:11] drwx------ 5 mf493845 unix-user       440 Mar 24 23:06 pilot3
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user 236689435 Mar 25 00:51 HITS.49179817._000160.pool.root.1
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user      1016 Mar 25 00:52 memory_monitor_summary.json
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user    345371 Mar 25 00:52 log.49179817._000160.job.log.tgz.1
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user      6296 Mar 25 00:52 heartbeat.json
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user        95 Mar 25 00:52 pilot_heartbeat.json
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user      4831 Mar 25 00:53 pilotlog.txt
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user    937309 Mar 25 00:53 log.49179817._000160.job.log.1
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user       357 Mar 25 00:53 output.list
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user       620 Mar 25 00:53 runtime_log
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user   1300480 Mar 25 00:53 result.tar.gz
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user      9219 Mar 25 00:53 runtime_log.err
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user       643 Mar 25 00:53 nzvKDmY1OM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmsuuLDmezEY4n.diag
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user     21474 Mar 25 00:53 stderr.txt
[2026-03-25 00:53:11] HITS file was successfully produced:
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user 236689435 Mar 25 00:51 shared/HITS.pool.root.1
[2026-03-25 00:53:11]  *** Contents of shared directory: ***
[2026-03-25 00:53:11] total 467192
[2026-03-25 00:53:11] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 23:06 start_atlas.sh
[2026-03-25 00:53:11] -rw-r--r-- 2 mf493845 unix-user    597544 Mar 24 23:06 input.tar.gz
[2026-03-25 00:53:11] -rw-r--r-- 2 mf493845 unix-user 239793806 Mar 24 23:06 ATLAS.root_0
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user 236689435 Mar 25 00:51 HITS.pool.root.1
[2026-03-25 00:53:11] -rw------- 1 mf493845 unix-user   1300480 Mar 25 00:53 result.tar.gz
00:53:12 (22888): run_atlas exited; CPU time 46977.359981
00:53:12 (22888): called boinc_finish(0)

</stderr_txt>
]]>

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