Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:46:17 (913732): wrapper (7.7.26015): starting
18:46:17 (913732): wrapper: running run_atlas (--nthreads 4)
[2026-03-25 18:46:17] Arguments: --nthreads 4
[2026-03-25 18:46:17] Threads: 4
[2026-03-25 18:46:17] Checking for CVMFS
[2026-03-25 18:46:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 18:46:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 18:46:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 18:46:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 18:46:18] 2.9.2.0 462660 4407 94008 157691 1 49 29361396 36864000 0 130560 0 1678848 99.982 150424 6881 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-25 18:46:18] CVMFS is ok
[2026-03-25 18:46:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 18:46:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 18:46:18] Further information can be found at the LHC@home message board.
[2026-03-25 18:46:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 18:46:18] Checking for apptainer binary...
[2026-03-25 18:46:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 18:46:18] Running /usr/bin/apptainer --version
[2026-03-25 18:46:18] apptainer version 1.4.1-1.1
[2026-03-25 18:46:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 18:46:18] iaxoA393
[2026-03-25 18:46:18] apptainer works
[2026-03-25 18:46:18] Set ATHENA_PROC_NUMBER=4
[2026-03-25 18:46:18] Set ATHENA_CORE_NUMBER=4
[2026-03-25 18:46:18] Starting ATLAS job with PandaID=7056945026
[2026-03-25 18:46:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 22:15:51]  *** The last 200 lines of the pilot log: ***
[2026-03-25 22:15:51] 2026-03-25 21:14:54,726 | INFO     | job 7056945026 has completed (purged errors)
[2026-03-25 22:15:51] 2026-03-25 21:14:54,726 | INFO     | overall cleanup function is called
[2026-03-25 22:15:51] 2026-03-25 21:14:55,733 | INFO     | --- collectZombieJob: --- 10, [922360]
[2026-03-25 22:15:51] 2026-03-25 21:14:55,733 | INFO     | zombie collector waiting for pid 922360
[2026-03-25 22:15:51] 2026-03-25 21:14:55,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 22:15:51] 2026-03-25 21:14:55,733 | INFO     | collected zombie processes
[2026-03-25 22:15:51] 2026-03-25 21:14:55,733 | INFO     | will attempt to kill all subprocesses of pid=922360
[2026-03-25 22:15:51] 2026-03-25 21:14:55,776 | INFO     | process IDs to be killed: [922360] (in reverse order)
[2026-03-25 22:15:51] 2026-03-25 21:14:55,808 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 22:15:51] 2026-03-25 21:14:55,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 22:15:51] 2026-03-25 21:14:55,810 | INFO     | did not find any defunct processes belonging to 922360
[2026-03-25 22:15:51] 2026-03-25 21:14:55,811 | INFO     | did not find any defunct processes belonging to 922360
[2026-03-25 22:15:51] 2026-03-25 21:14:55,811 | INFO     | ready for new job
[2026-03-25 22:15:51] 2026-03-25 21:14:55,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 22:15:51] 2026-03-25 21:14:55,812 | INFO     | **************************************
[2026-03-25 22:15:51] 2026-03-25 21:14:55,812 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 22:15:51] 2026-03-25 21:14:55,812 | INFO     | **************************************
[2026-03-25 22:15:51] 2026-03-25 21:14:55,812 | INFO     | 
[2026-03-25 22:15:51] 2026-03-25 21:14:55,812 | INFO     | architecture information:
[2026-03-25 22:15:51] 2026-03-25 21:14:55,813 | INFO     | executing command: cat /etc/os-release
[2026-03-25 22:15:51] 2026-03-25 21:14:55,825 | INFO     | cat /etc/os-release:
[2026-03-25 22:15:51] NAME="CentOS Linux"
[2026-03-25 22:15:51] VERSION="7 (Core)"
[2026-03-25 22:15:51] ID="centos"
[2026-03-25 22:15:51] ID_LIKE="rhel fedora"
[2026-03-25 22:15:51] VERSION_ID="7"
[2026-03-25 22:15:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 22:15:51] ANSI_COLOR="0;31"
[2026-03-25 22:15:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 22:15:51] HOME_URL="https://www.centos.org/"
[2026-03-25 22:15:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 22:15:51] 
[2026-03-25 22:15:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 22:15:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 22:15:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 22:15:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 22:15:51] 
[2026-03-25 22:15:51] 2026-03-25 21:14:55,826 | INFO     | **************************************
[2026-03-25 22:15:51] 2026-03-25 21:14:56,329 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-25 22:15:51] 2026-03-25 21:14:56,343 | INFO     | sufficient remaining disk space (329974284288 B)
[2026-03-25 22:15:51] 2026-03-25 21:14:56,344 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 22:15:51] 2026-03-25 21:14:56,344 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 22:15:51] 2026-03-25 21:14:56,344 | INFO     | update_server=False
[2026-03-25 22:15:51] 2026-03-25 21:14:56,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 22:15:51] 2026-03-25 21:14:56,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 22:15:51] 2026-03-25 21:14:56,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 22:15:51] 2026-03-25 21:14:57,196 | INFO     | all data control threads have been joined
[2026-03-25 22:15:51] 2026-03-25 21:14:57,350 | INFO     | [job] queue monitor thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:57,350 | INFO     | [job] retrieve thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:57,429 | INFO     | [payload] failed_post thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:57,569 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 22:15:51] 2026-03-25 21:14:57,720 | INFO     | all payload control threads have been joined
[2026-03-25 22:15:51] 2026-03-25 21:14:57,858 | INFO     | [job] validate thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:57,955 | INFO     | all job control threads have been joined
[2026-03-25 22:15:51] 2026-03-25 21:14:58,043 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:58,067 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:58,136 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:58,202 | INFO     | [data] control thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:58,354 | INFO     | [data] copytool_in thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:58,469 | INFO     | [payload] validate_post thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:58,675 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:58,700 | WARNING  | process 922360 can no longer be monitored (due to stat problems) - aborting
[2026-03-25 22:15:51] 2026-03-25 21:14:58,725 | INFO     | [payload] control thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:58,731 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 22:15:51] 2026-03-25 21:14:58,769 | INFO     | number of running child processes to parent process 922360: 1
[2026-03-25 22:15:51] 2026-03-25 21:14:58,770 | INFO     | maximum number of monitored processes: 6
[2026-03-25 22:15:51] 2026-03-25 21:14:58,770 | INFO     | aborting job monitoring since job object (job id=7056945026) has expired
[2026-03-25 22:15:51] 2026-03-25 21:14:58,770 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 22:15:51] 2026-03-25 21:14:58,770 | INFO     | will abort loop
[2026-03-25 22:15:51] 2026-03-25 21:14:58,961 | INFO     | [job] control thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:59,575 | INFO     | [data] copytool_out thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:14:59,775 | INFO     | [job] job monitor thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:15:00,351 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 22:15:51] 2026-03-25 21:15:26,412 | INFO     | PID=917848 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-25 22:15:51] 2026-03-25 21:15:26,412 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 22:15:51] 2026-03-25 21:15:26,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 22:15:51] 2026-03-25 21:15:26,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 22:15:51] 2026-03-25 21:15:45,223 | INFO     | [monitor] cgroup control has ended
[2026-03-25 22:15:51] 2026-03-25 21:15:46,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140352298264384)>', '<ExcThread(monitor, started 140351528490752)>']
[2026-03-25 22:15:51] 2026-03-25 21:15:47,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 22:15:51] 2026-03-25 21:15:47,521 | INFO     | [monitor] control thread has ended
[2026-03-25 22:15:51] 2026-03-25 21:15:51,823 | INFO     | all workflow threads have been joined
[2026-03-25 22:15:51] 2026-03-25 21:15:51,823 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 22:15:51] 2026-03-25 21:15:51,823 | INFO     | traces error code: 0
[2026-03-25 22:15:51] 2026-03-25 21:15:51,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 22:15:51] 2026-03-25 21:15:51,891 [wrapper] ==== pilot stdout END ====
[2026-03-25 22:15:51] 2026-03-25 21:15:51,894 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 22:15:51] 2026-03-25 21:15:51,898 [wrapper] pilotpid: 917848
[2026-03-25 22:15:51] 2026-03-25 21:15:51,902 [wrapper] Pilot exit status: 0
[2026-03-25 22:15:51] 2026-03-25 21:15:51,913 [wrapper] pandaids: 7056945026
[2026-03-25 22:15:51] 2026-03-25 21:15:51,934 [wrapper] cleanup supervisor_pilot  929802 917849
[2026-03-25 22:15:51] 2026-03-25 21:15:51,938 [wrapper] Test setup, not cleaning
[2026-03-25 22:15:51] 2026-03-25 21:15:51,942 [wrapper] apfmon messages muted
[2026-03-25 22:15:51] 2026-03-25 21:15:51,945 [wrapper] ==== wrapper stdout END ====
[2026-03-25 22:15:51] 2026-03-25 21:15:51,948 [wrapper] ==== wrapper stderr END ====
[2026-03-25 22:15:51]  *** Error codes and diagnostics ***
[2026-03-25 22:15:52]     "exeErrorCode": 0,
[2026-03-25 22:15:52]     "exeErrorDiag": "",
[2026-03-25 22:15:52]     "pilotErrorCode": 0,
[2026-03-25 22:15:52]     "pilotErrorDiag": "",
[2026-03-25 22:15:52]  *** Listing of results directory ***
[2026-03-25 22:15:52] total 491624
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc    585013 Mar 16 16:03 pilot3.tar.gz
[2026-03-25 22:15:52] -rwx------ 1 boinc boinc     36322 Mar 16 16:06 runpilot2-wrapper.sh
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc      5111 Mar 16 16:09 queuedata.json
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc       100 Mar 25 18:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 22:15:52] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 18:46 run_atlas
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc       105 Mar 25 18:46 job.xml
[2026-03-25 22:15:52] -rw-r--r-- 2 boinc boinc 248511132 Mar 25 18:46 EVNT.49129889._000024.pool.root.1
[2026-03-25 22:15:52] -rw-r--r-- 2 boinc boinc    597558 Mar 25 18:46 input.tar.gz
[2026-03-25 22:15:52] -rw-r--r-- 2 boinc boinc     15845 Mar 25 18:46 start_atlas.sh
[2026-03-25 22:15:52] drwxrwx--x 2 boinc boinc      4096 Mar 25 18:46 shared
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc         0 Mar 25 18:46 boinc_setup_complete
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc      6371 Mar 25 18:46 init_data.xml
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc         0 Mar 25 18:46 boinc_lockfile
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc      2661 Mar 25 18:46 pandaJob.out
[2026-03-25 22:15:52] -rw------- 1 boinc boinc   1012131 Mar 25 18:46 agis_schedconf.cvmfs.json
[2026-03-25 22:15:52] -rw------- 1 boinc boinc       422 Mar 25 18:46 workernode_map.json
[2026-03-25 22:15:52] drwx------ 5 boinc boinc      4096 Mar 25 18:46 pilot3
[2026-03-25 22:15:52] -rw------- 1 boinc boinc 246675758 Mar 25 22:14 HITS.49178853._000600.pool.root.1
[2026-03-25 22:15:52] -rw------- 1 boinc boinc        95 Mar 25 22:14 pilot_heartbeat.json
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc       530 Mar 25 22:14 boinc_task_state.xml
[2026-03-25 22:15:52] -rw------- 1 boinc boinc      1028 Mar 25 22:14 memory_monitor_summary.json
[2026-03-25 22:15:52] -rw------- 1 boinc boinc   1511579 Mar 25 22:14 agis_ddmendpoints.agis.ALL.json
[2026-03-25 22:15:52] -rw------- 1 boinc boinc    391933 Mar 25 22:14 log.49178853._000600.job.log.tgz.1
[2026-03-25 22:15:52] -rw------- 1 boinc boinc      6316 Mar 25 22:14 heartbeat.json
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc      8192 Mar 25 22:15 boinc_mmap_file
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc        28 Mar 25 22:15 wrapper_checkpoint.txt
[2026-03-25 22:15:52] -rw------- 1 boinc boinc      5269 Mar 25 22:15 pilotlog.txt
[2026-03-25 22:15:52] -rw------- 1 boinc boinc   1760877 Mar 25 22:15 log.49178853._000600.job.log.1
[2026-03-25 22:15:52] -rw------- 1 boinc boinc       357 Mar 25 22:15 output.list
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc       620 Mar 25 22:15 runtime_log
[2026-03-25 22:15:52] -rw------- 1 boinc boinc   2170880 Mar 25 22:15 result.tar.gz
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc      8907 Mar 25 22:15 runtime_log.err
[2026-03-25 22:15:52] -rw------- 1 boinc boinc       663 Mar 25 22:15 9WgMDmshOM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmxauLDmNuyNFm.diag
[2026-03-25 22:15:52] -rw-r--r-- 1 boinc boinc     11431 Mar 25 22:15 stderr.txt
[2026-03-25 22:15:52] HITS file was successfully produced:
[2026-03-25 22:15:52] -rw------- 1 boinc boinc 246675758 Mar 25 22:14 shared/HITS.pool.root.1
[2026-03-25 22:15:52]  *** Contents of shared directory: ***
[2026-03-25 22:15:52] total 486312
[2026-03-25 22:15:52] -rw-r--r-- 2 boinc boinc 248511132 Mar 25 18:46 ATLAS.root_0
[2026-03-25 22:15:52] -rw-r--r-- 2 boinc boinc    597558 Mar 25 18:46 input.tar.gz
[2026-03-25 22:15:52] -rw-r--r-- 2 boinc boinc     15845 Mar 25 18:46 start_atlas.sh
[2026-03-25 22:15:52] -rw------- 1 boinc boinc 246675758 Mar 25 22:14 HITS.pool.root.1
[2026-03-25 22:15:52] -rw------- 1 boinc boinc   2170880 Mar 25 22:15 result.tar.gz
22:15:53 (913732): run_atlas exited; CPU time 48438.012078
22:15:53 (913732): called boinc_finish(0)

</stderr_txt>
]]>

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