Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
19:32:13 (16589): wrapper (7.7.26015): starting
19:32:13 (16589): wrapper: running run_atlas (--nthreads 8)
[2026-03-24 19:32:13] Arguments: --nthreads 8
[2026-03-24 19:32:13] Threads: 8
[2026-03-24 19:32:13] Checking for CVMFS
[2026-03-24 19:32:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 19:32:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 19:32:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 19:32:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 19:32:13] 2.11.0.0 4492 235792 75500 157653 3 49 3882729 4096000 0 130560 3 14038032 99.700 11306084 349 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-24 19:32:13] CVMFS is ok
[2026-03-24 19:32:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 19:32:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 19:32:13] Further information can be found at the LHC@home message board.
[2026-03-24 19:32:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 19:32:13] Checking for apptainer binary...
[2026-03-24 19:32:13] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-24 19:32:13] apptainer is not installed, using version from CVMFS
[2026-03-24 19:32:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 19:32:13] WARNING: Environment variable TMPDIR already has value [/tmp/job_11385390/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node303
[2026-03-24 19:32:13] apptainer works
[2026-03-24 19:32:13] Set ATHENA_PROC_NUMBER=8
[2026-03-24 19:32:13] Set ATHENA_CORE_NUMBER=8
[2026-03-24 19:32:13] Starting ATLAS job with PandaID=7056915436
[2026-03-24 19:32:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11385390/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 21:36:45]  *** The last 200 lines of the pilot log: ***
[2026-03-24 21:36:45] 2026-03-24 20:36:12,450 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-24 21:36:45] 2026-03-24 20:36:12,450 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-24 21:36:45] 2026-03-24 20:36:12,451 | INFO     | fitting pss+swap vs Time
[2026-03-24 21:36:45] 2026-03-24 20:36:12,451 | INFO     | sum of square deviations: 563026370.5
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | sum of deviations: -898473056.499997
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | mean x: 1774380848.5
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | mean y: 2554137.450819672
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | intersect: 2834097148.3600273
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | chi2: 1.113085639726946
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | sum of square deviations: 496597218.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | sum of deviations: -707506608.9999976
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | mean x: 1774380696.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | mean y: 2554578.153846154
[2026-03-24 21:36:45] 2026-03-24 20:36:12,452 | INFO     | intersect: 2530531022.238589
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | chi2: 1.1134073672025928
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | current chi2=1.1134073672025928 (change=-0.0289041080186582 %)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | right removable region: 116
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | sum of square deviations: 496597218.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | sum of deviations: -10398219027.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | mean x: 1774381001.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | mean y: 2575088.794871795
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | intersect: 37156231245.09155
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | chi2: 0.03810325863260134
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | current chi2=0.03810325863260134 (change=96.57679002651149 %)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,453 | INFO     | sum of square deviations: 435610028.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | sum of deviations: -7034868066.000001
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | mean x: 1774381153.5
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | mean y: 2566733.1964285714
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | intersect: 28657869667.75008
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | chi2: 0.022299162465693478
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | current chi2=0.022299162465693478 (change=41.47701990345203 %)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | sum of square deviations: 379832238.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | sum of deviations: -5262369167.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | mean x: 1774381306.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | mean y: 2561903.9345794395
[2026-03-24 21:36:45] 2026-03-24 20:36:12,454 | INFO     | intersect: 24585650280.955364
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | chi2: 0.019613478002963553
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | current chi2=0.019613478002963553 (change=12.043880423140381 %)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | left removable region: 30
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | sum of square deviations: 197203697.5
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | sum of deviations: -244264801.0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | mean x: 1774381580.5
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | mean y: 2545325.1395348837
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | intersect: 2200369043.2211795
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | chi2: 0.0031042420234374626
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | current memory leak: -1.24 B/s (using 86 data points, chi2=0.00)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | could have reported an average CPU frequency of 2489 MHz (8 samples)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | ..............................
[2026-03-24 21:36:45] 2026-03-24 20:36:12,455 | INFO     | . Timing measurements:
[2026-03-24 21:36:45] 2026-03-24 20:36:12,456 | INFO     | . get job = 0 s
[2026-03-24 21:36:45] 2026-03-24 20:36:12,456 | INFO     | . initial setup = 2 s
[2026-03-24 21:36:45] 2026-03-24 20:36:12,456 | INFO     | . payload setup = 3 s
[2026-03-24 21:36:45] 2026-03-24 20:36:12,456 | INFO     | . stage-in = 0 s
[2026-03-24 21:36:45] 2026-03-24 20:36:12,456 | INFO     | . payload execution = 7409 s
[2026-03-24 21:36:45] 2026-03-24 20:36:12,456 | INFO     | . stage-out = 0 s
[2026-03-24 21:36:45] 2026-03-24 20:36:12,456 | INFO     | . log creation = 0 s
[2026-03-24 21:36:45] 2026-03-24 20:36:12,456 | INFO     | ..............................
[2026-03-24 21:36:45] 2026-03-24 20:36:12,660 | WARNING  | process 24936 can no longer be monitored (due to stat problems) - aborting
[2026-03-24 21:36:45] 2026-03-24 20:36:12,660 | INFO     | using path: /tmp/job_11385390/atlas/pilot/slots/0/PanDA_Pilot-7056915436/memory_monitor_summary.json (trf name=prmon)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | 
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | job summary report
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | --------------------------------------------------
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | PanDA job id: 7056915436
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | task id: 49177127
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | errors: (none)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | pilot state: finished 
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | transexitcode: 0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | exeerrorcode: 0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,859 | INFO     | exeerrordiag: 
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | exitcode: 0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | exitmsg: OK
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | cpuconsumptiontime: 54527 s
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | nevents: 400
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | neventsw: 0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | pid: 24936
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | pgrp: 24936
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | corecount: 8
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | event service: False
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | sizes: {0: 2280416, 10: 2280416, 7416: 2308015, 7418: 2317043, 7419: 2317099, 7420: 2317293}
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | --------------------------------------------------
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | 
[2026-03-24 21:36:45] 2026-03-24 20:36:12,860 | INFO     | executing command: ls -lF /tmp/job_11385390/atlas/pilot/slots/0
[2026-03-24 21:36:45] 2026-03-24 20:36:12,869 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,870 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,871 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-24 21:36:45] 2026-03-24 20:36:12,871 | INFO     | job 7056915436 has completed (purged errors)
[2026-03-24 21:36:45] 2026-03-24 20:36:12,871 | INFO     | overall cleanup function is called
[2026-03-24 21:36:45] 2026-03-24 20:36:12,899 | INFO     | number of running child processes to parent process 24936: 1
[2026-03-24 21:36:45] 2026-03-24 20:36:12,899 | INFO     | maximum number of monitored processes: 6
[2026-03-24 21:36:45] 2026-03-24 20:36:12,899 | INFO     | aborting job monitoring since job object (job id=7056915436) has expired
[2026-03-24 21:36:45] 2026-03-24 20:36:12,919 | INFO     | PID=20396 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-24 21:36:45] 2026-03-24 20:36:12,919 | INFO     | .. there are 4 such processes running
[2026-03-24 21:36:45] 2026-03-24 20:36:13,877 | INFO     | --- collectZombieJob: --- 10, [24936]
[2026-03-24 21:36:45] 2026-03-24 20:36:13,877 | INFO     | zombie collector waiting for pid 24936
[2026-03-24 21:36:45] 2026-03-24 20:36:13,877 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-24 21:36:45] 2026-03-24 20:36:13,877 | INFO     | collected zombie processes
[2026-03-24 21:36:45] 2026-03-24 20:36:13,877 | INFO     | will attempt to kill all subprocesses of pid=24936
[2026-03-24 21:36:45] 2026-03-24 20:36:13,997 | INFO     | process IDs to be killed: [24936] (in reverse order)
[2026-03-24 21:36:45] 2026-03-24 20:36:14,038 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 21:36:45] 2026-03-24 20:36:14,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 21:36:45] 2026-03-24 20:36:14,043 | INFO     | did not find any defunct processes belonging to 24936
[2026-03-24 21:36:45] 2026-03-24 20:36:14,047 | INFO     | did not find any defunct processes belonging to 24936
[2026-03-24 21:36:45] 2026-03-24 20:36:14,047 | INFO     | ready for new job
[2026-03-24 21:36:45] 2026-03-24 20:36:14,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 21:36:45] 2026-03-24 20:36:14,048 | INFO     | **************************************
[2026-03-24 21:36:45] 2026-03-24 20:36:14,048 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 21:36:45] 2026-03-24 20:36:14,048 | INFO     | **************************************
[2026-03-24 21:36:45] 2026-03-24 20:36:14,048 | INFO     | 
[2026-03-24 21:36:45] 2026-03-24 20:36:14,063 | INFO     | architecture information:
[2026-03-24 21:36:45] 2026-03-24 20:36:14,063 | INFO     | executing command: cat /etc/os-release
[2026-03-24 21:36:45] 2026-03-24 20:36:14,070 | INFO     | cat /etc/os-release:
[2026-03-24 21:36:45] NAME="CentOS Linux"
[2026-03-24 21:36:45] VERSION="7 (Core)"
[2026-03-24 21:36:45] ID="centos"
[2026-03-24 21:36:45] ID_LIKE="rhel fedora"
[2026-03-24 21:36:45] VERSION_ID="7"
[2026-03-24 21:36:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 21:36:45] ANSI_COLOR="0;31"
[2026-03-24 21:36:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 21:36:45] HOME_URL="https://www.centos.org/"
[2026-03-24 21:36:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 21:36:45] 
[2026-03-24 21:36:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 21:36:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 21:36:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 21:36:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 21:36:45] 
[2026-03-24 21:36:45] 2026-03-24 20:36:14,070 | INFO     | **************************************
[2026-03-24 21:36:45] 2026-03-24 20:36:14,572 | INFO     | executing command: df -mP /tmp/job_11385390/atlas/pilot/slots/0
[2026-03-24 21:36:45] 2026-03-24 20:36:14,579 | INFO     | sufficient remaining disk space (224722419712 B)
[2026-03-24 21:36:45] 2026-03-24 20:36:14,580 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 21:36:45] 2026-03-24 20:36:14,580 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 21:36:45] 2026-03-24 20:36:14,580 | INFO     | update_server=False
[2026-03-24 21:36:45] 2026-03-24 20:36:14,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 21:36:45] 2026-03-24 20:36:14,580 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 21:36:45] 2026-03-24 20:36:14,580 | INFO     | aborting loop
[2026-03-24 21:36:45] 2026-03-24 20:36:14,646 | INFO     | all data control threads have been joined
[2026-03-24 21:36:45] 2026-03-24 20:36:15,344 | INFO     | all job control threads have been joined
[2026-03-24 21:36:45] 2026-03-24 20:36:15,585 | INFO     | [job] retrieve thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:15,585 | INFO     | [job] job monitor thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:15,590 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:15,647 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:15,651 | INFO     | [data] control thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:15,782 | INFO     | all payload control threads have been joined
[2026-03-24 21:36:45] 2026-03-24 20:36:15,785 | INFO     | [data] copytool_in thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:15,786 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:15,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 21:36:45] 2026-03-24 20:36:16,042 | INFO     | [payload] validate_post thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:16,349 | INFO     | [job] control thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:16,696 | INFO     | [payload] failed_post thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:16,782 | INFO     | [payload] control thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:17,002 | INFO     | [job] validate thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:17,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 21:36:45] 2026-03-24 20:36:17,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 21:36:45] 2026-03-24 20:36:17,903 | INFO     | [data] copytool_out thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:18,509 | INFO     | [job] queue monitor thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:21,611 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:25,298 | INFO     | job.realtimelogging is not enabled
[2026-03-24 21:36:45] 2026-03-24 20:36:26,303 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 21:36:45] 2026-03-24 20:36:32,818 | INFO     | [monitor] cgroup control has ended
[2026-03-24 21:36:45] 2026-03-24 20:36:34,926 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-24 21:36:45] 2026-03-24 20:36:39,951 | INFO     | all workflow threads have been joined
[2026-03-24 21:36:45] 2026-03-24 20:36:39,951 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 21:36:45] 2026-03-24 20:36:39,951 | INFO     | traces error code: 0
[2026-03-24 21:36:45] 2026-03-24 20:36:39,951 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 21:36:45] 2026-03-24 20:36:45,128 | INFO     | PID=20396 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-24 21:36:45] 2026-03-24 20:36:45,128 | INFO     | .. there are 4 such processes running
[2026-03-24 21:36:45] 2026-03-24 20:36:45,128 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 21:36:45] 2026-03-24 20:36:45,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 21:36:45] 2026-03-24 20:36:45,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 21:36:45] 2026-03-24 20:36:45,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 21:36:45] 2026-03-24 20:36:45,128 | INFO     | [monitor] control thread has ended
[2026-03-24 21:36:45] 2026-03-24 20:36:45,182 [wrapper] ==== pilot stdout END ====
[2026-03-24 21:36:45] 2026-03-24 20:36:45,183 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 21:36:45] 2026-03-24 20:36:45,184 [wrapper] pilotpid: 20396
[2026-03-24 21:36:45] 2026-03-24 20:36:45,185 [wrapper] Pilot exit status: 0
[2026-03-24 21:36:45] 2026-03-24 20:36:45,189 [wrapper] pandaids: 7056915436
[2026-03-24 21:36:45] 2026-03-24 20:36:45,213 [wrapper] cleanup supervisor_pilot 27095 20397
[2026-03-24 21:36:45] 2026-03-24 20:36:45,214 [wrapper] Test setup, not cleaning
[2026-03-24 21:36:45] 2026-03-24 20:36:45,216 [wrapper] apfmon messages muted
[2026-03-24 21:36:45] 2026-03-24 20:36:45,217 [wrapper] ==== wrapper stdout END ====
[2026-03-24 21:36:45] 2026-03-24 20:36:45,218 [wrapper] ==== wrapper stderr END ====
[2026-03-24 21:36:45]  *** Error codes and diagnostics ***
[2026-03-24 21:36:45]     "exeErrorCode": 0,
[2026-03-24 21:36:45]     "exeErrorDiag": "",
[2026-03-24 21:36:45]     "pilotErrorCode": 0,
[2026-03-24 21:36:45]     "pilotErrorDiag": "",
[2026-03-24 21:36:45]  *** Listing of results directory ***
[2026-03-24 21:36:45] total 484668
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-24 21:36:45] -rwx------ 1 mf493845 unix-user     36322 Mar 16 14:32 runpilot2-wrapper.sh
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user       100 Mar 24 18:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 21:36:45] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 24 18:30 run_atlas
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user       105 Mar 24 18:30 job.xml
[2026-03-24 21:36:45] -rw-r--r-- 2 mf493845 unix-user 242631906 Mar 24 19:32 EVNT.49136573._000025.pool.root.1
[2026-03-24 21:36:45] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 19:32 start_atlas.sh
[2026-03-24 21:36:45] drwxrwx--x 2 mf493845 unix-user       100 Mar 24 19:32 shared
[2026-03-24 21:36:45] -rw-r--r-- 2 mf493845 unix-user    596136 Mar 24 19:32 input.tar.gz
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user      6389 Mar 24 19:32 init_data.xml
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user         0 Mar 24 19:32 boinc_setup_complete
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user      8192 Mar 24 19:32 boinc_mmap_file
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user         0 Mar 24 19:32 boinc_lockfile
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user      2604 Mar 24 19:32 pandaJob.out
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user      5111 Mar 24 19:32 queuedata.json
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user   1010852 Mar 24 19:32 agis_schedconf.cvmfs.json
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user   1511579 Mar 24 19:32 agis_ddmendpoints.agis.ALL.json
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user       420 Mar 24 19:32 workernode_map.json
[2026-03-24 21:36:45] drwx------ 5 mf493845 unix-user       440 Mar 24 19:32 pilot3
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user 246844379 Mar 24 21:35 HITS.49177127._000614.pool.root.1
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user        95 Mar 24 21:36 pilot_heartbeat.json
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user      1022 Mar 24 21:36 memory_monitor_summary.json
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user    367313 Mar 24 21:36 log.49177127._000614.job.log.tgz.1
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user      6316 Mar 24 21:36 heartbeat.json
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user       820 Mar 24 21:36 pilotlog.txt
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user   1091354 Mar 24 21:36 log.49177127._000614.job.log.1
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user       357 Mar 24 21:36 output.list
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user       620 Mar 24 21:36 runtime_log
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user   1474560 Mar 24 21:36 result.tar.gz
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user      9219 Mar 24 21:36 runtime_log.err
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user       647 Mar 24 21:36 3iPODmkENM9n9Rq4apOajLDm4fhM0noT9bVooX4SDms0tLDm0WOmwn.diag
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user     21648 Mar 24 21:36 stderr.txt
[2026-03-24 21:36:45] HITS file was successfully produced:
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user 246844379 Mar 24 21:35 shared/HITS.pool.root.1
[2026-03-24 21:36:45]  *** Contents of shared directory: ***
[2026-03-24 21:36:45] total 480048
[2026-03-24 21:36:45] -rw-r--r-- 2 mf493845 unix-user 242631906 Mar 24 19:32 ATLAS.root_0
[2026-03-24 21:36:45] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 19:32 start_atlas.sh
[2026-03-24 21:36:45] -rw-r--r-- 2 mf493845 unix-user    596136 Mar 24 19:32 input.tar.gz
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user 246844379 Mar 24 21:35 HITS.pool.root.1
[2026-03-24 21:36:45] -rw------- 1 mf493845 unix-user   1474560 Mar 24 21:36 result.tar.gz
21:36:46 (16589): run_atlas exited; CPU time 54574.304933
21:36:46 (16589): called boinc_finish(0)

</stderr_txt>
]]>

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