Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:37:44 (24599): wrapper (7.7.26015): starting
14:37:44 (24599): wrapper: running run_atlas (--nthreads 12)
[2026-03-24 14:37:44] Arguments: --nthreads 12
[2026-03-24 14:37:44] Threads: 12
[2026-03-24 14:37:44] Checking for CVMFS
[2026-03-24 14:37:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 14:37:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 14:37:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 14:37:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 14:37:45] 2.11.2.0 2937 457971 97552 157652 2 52 16409451 20275201 1 130560 1 196796681 99.954 26470159 18093 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-24 14:37:45] CVMFS is ok
[2026-03-24 14:37:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 14:37:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 14:37:45] Further information can be found at the LHC@home message board.
[2026-03-24 14:37:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 14:37:45] Checking for apptainer binary...
[2026-03-24 14:37:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 14:37:45] Running /usr/bin/apptainer --version
[2026-03-24 14:37:45] apptainer version 1.3.2-1.el7
[2026-03-24 14:37:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 14:37:46] c-205-8.aglt2.org
[2026-03-24 14:37:46] apptainer works
[2026-03-24 14:37:46] Set ATHENA_PROC_NUMBER=12
[2026-03-24 14:37:46] Set ATHENA_CORE_NUMBER=12
[2026-03-24 14:37:46] Starting ATLAS job with PandaID=7056943873
[2026-03-24 14:37:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:13:21 (28695): wrapper (7.7.26015): starting
16:13:21 (28695): wrapper: running run_atlas (--nthreads 12)
[2026-03-24 16:13:21] Arguments: --nthreads 12
[2026-03-24 16:13:21] Threads: 12
[2026-03-24 16:13:21] This job has been restarted, cleaning up previous attempt
[2026-03-24 16:13:21] Checking for CVMFS
[2026-03-24 16:13:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 16:13:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 16:13:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 16:13:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 16:13:22] 2.11.2.0 2937 458067 98384 157655 3 11 16613407 20275201 1 130560 1 196863180 99.954 26474623 18094 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-24 16:13:22] CVMFS is ok
[2026-03-24 16:13:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 16:13:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 16:13:22] Further information can be found at the LHC@home message board.
[2026-03-24 16:13:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 16:13:22] Checking for apptainer binary...
[2026-03-24 16:13:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 16:13:22] Running /usr/bin/apptainer --version
[2026-03-24 16:13:22] apptainer version 1.3.2-1.el7
[2026-03-24 16:13:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 16:13:24] c-205-8.aglt2.org
[2026-03-24 16:13:24] apptainer works
[2026-03-24 16:13:24] Set ATHENA_PROC_NUMBER=12
[2026-03-24 16:13:24] Set ATHENA_CORE_NUMBER=12
[2026-03-24 16:13:24] Starting ATLAS job with PandaID=7056943873
[2026-03-24 16:13:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 19:56:19]  *** The last 200 lines of the pilot log: ***
[2026-03-24 19:56:19] 2026-03-24 23:55:46,993 | INFO     | intersect: -17547271609.66622
[2026-03-24 19:56:19] 2026-03-24 23:55:46,994 | INFO     | chi2: 0.18002124201025843
[2026-03-24 19:56:19] 2026-03-24 23:55:46,994 | INFO     | current chi2=0.18002124201025843 (change=89.10070448938406 %)
[2026-03-24 19:56:19] 2026-03-24 23:55:46,994 | INFO     | sum of square deviations: 2790348132.0
[2026-03-24 19:56:19] 2026-03-24 23:55:46,995 | INFO     | sum of deviations: 13818905992.5
[2026-03-24 19:56:19] 2026-03-24 23:55:46,995 | INFO     | mean x: 1774390174.5
[2026-03-24 19:56:19] 2026-03-24 23:55:46,996 | INFO     | mean y: 2691853.2259615385
[2026-03-24 19:56:19] 2026-03-24 23:55:46,996 | INFO     | intersect: -8784789083.017004
[2026-03-24 19:56:19] 2026-03-24 23:55:46,996 | INFO     | chi2: 0.03522687523098457
[2026-03-24 19:56:19] 2026-03-24 23:55:46,996 | INFO     | current chi2=0.03522687523098457 (change=80.43182302398671 %)
[2026-03-24 19:56:19] 2026-03-24 23:55:46,996 | INFO     | sum of square deviations: 2593916542.0
[2026-03-24 19:56:19] 2026-03-24 23:55:46,997 | INFO     | sum of deviations: 9670441081.0
[2026-03-24 19:56:19] 2026-03-24 23:55:46,998 | INFO     | mean x: 1774390327.0
[2026-03-24 19:56:19] 2026-03-24 23:55:46,998 | INFO     | mean y: 2695027.379310345
[2026-03-24 19:56:19] 2026-03-24 23:55:46,998 | INFO     | intersect: -6612451155.666166
[2026-03-24 19:56:19] 2026-03-24 23:55:46,998 | INFO     | chi2: 0.004061932677114427
[2026-03-24 19:56:19] 2026-03-24 23:55:46,998 | INFO     | current chi2=0.004061932677114427 (change=88.4692222898565 %)
[2026-03-24 19:56:19] 2026-03-24 23:55:46,999 | INFO     | sum of square deviations: 2406926989.5
[2026-03-24 19:56:19] 2026-03-24 23:55:47,000 | INFO     | sum of deviations: 7409421211.5
[2026-03-24 19:56:19] 2026-03-24 23:55:47,000 | INFO     | mean x: 1774390479.5
[2026-03-24 19:56:19] 2026-03-24 23:55:47,000 | INFO     | mean y: 2696868.207070707
[2026-03-24 19:56:19] 2026-03-24 23:55:47,000 | INFO     | intersect: -5459540463.313349
[2026-03-24 19:56:19] 2026-03-24 23:55:47,000 | INFO     | chi2: 0.0020105104682818916
[2026-03-24 19:56:19] 2026-03-24 23:55:47,000 | INFO     | current chi2=0.0020105104682818916 (change=50.503599441481974 %)
[2026-03-24 19:56:19] 2026-03-24 23:55:47,001 | INFO     | sum of square deviations: 2229146912.0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,002 | INFO     | sum of deviations: 5716381126.0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,002 | INFO     | mean x: 1774390632.0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,002 | INFO     | mean y: 2698317.554404145
[2026-03-24 19:56:19] 2026-03-24 23:55:47,002 | INFO     | intersect: -4547514620.10056
[2026-03-24 19:56:19] 2026-03-24 23:55:47,002 | INFO     | chi2: 0.000854144096222515
[2026-03-24 19:56:19] 2026-03-24 23:55:47,002 | INFO     | current chi2=0.000854144096222515 (change=57.5160582500008 %)
[2026-03-24 19:56:19] 2026-03-24 23:55:47,003 | INFO     | sum of square deviations: 2060343747.0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,004 | INFO     | sum of deviations: 4754748730.5
[2026-03-24 19:56:19] 2026-03-24 23:55:47,004 | INFO     | mean x: 1774390784.5
[2026-03-24 19:56:19] 2026-03-24 23:55:47,004 | INFO     | mean y: 2699184.0585106383
[2026-03-24 19:56:19] 2026-03-24 23:55:47,004 | INFO     | intersect: -4092142922.8941765
[2026-03-24 19:56:19] 2026-03-24 23:55:47,004 | INFO     | chi2: 0.0005794311355842207
[2026-03-24 19:56:19] 2026-03-24 23:55:47,005 | INFO     | current chi2=0.0005794311355842207 (change=32.162367199307816 %)
[2026-03-24 19:56:19] 2026-03-24 23:55:47,005 | INFO     | sum of square deviations: 1900284932.0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,006 | INFO     | sum of deviations: 4051719734.9999995
[2026-03-24 19:56:19] 2026-03-24 23:55:47,006 | INFO     | mean x: 1774390937.0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,006 | INFO     | mean y: 2699853.7595628416
[2026-03-24 19:56:19] 2026-03-24 23:55:47,006 | INFO     | intersect: -3780593196.6575947
[2026-03-24 19:56:19] 2026-03-24 23:55:47,006 | INFO     | chi2: 0.0004750979614512872
[2026-03-24 19:56:19] 2026-03-24 23:55:47,007 | INFO     | current chi2=0.0004750979614512872 (change=18.006138732558423 %)
[2026-03-24 19:56:19] 2026-03-24 23:55:47,007 | INFO     | left removable region: 70
[2026-03-24 19:56:19] 2026-03-24 23:55:47,007 | INFO     | sum of square deviations: 887813855.5
[2026-03-24 19:56:19] 2026-03-24 23:55:47,008 | INFO     | sum of deviations: 973825563.5
[2026-03-24 19:56:19] 2026-03-24 23:55:47,008 | INFO     | mean x: 1774391821.5
[2026-03-24 19:56:19] 2026-03-24 23:55:47,008 | INFO     | mean y: 2702910.2887323946
[2026-03-24 19:56:19] 2026-03-24 23:55:47,008 | INFO     | intersect: -1943592593.8165524
[2026-03-24 19:56:19] 2026-03-24 23:55:47,008 | INFO     | chi2: 6.498191035806235e-05
[2026-03-24 19:56:19] 2026-03-24 23:55:47,008 | INFO     | current memory leak: 1.10 B/s (using 142 data points, chi2=0.00)
[2026-03-24 19:56:19] 2026-03-24 23:55:47,009 | INFO     | could have reported an average CPU frequency of 1773 MHz (11 samples)
[2026-03-24 19:56:19] 2026-03-24 23:55:47,009 | INFO     | ..............................
[2026-03-24 19:56:19] 2026-03-24 23:55:47,009 | INFO     | . Timing measurements:
[2026-03-24 19:56:19] 2026-03-24 23:55:47,009 | INFO     | . get job = 0 s
[2026-03-24 19:56:19] 2026-03-24 23:55:47,009 | INFO     | . initial setup = 1 s
[2026-03-24 19:56:19] 2026-03-24 23:55:47,009 | INFO     | . payload setup = 14 s
[2026-03-24 19:56:19] 2026-03-24 23:55:47,009 | INFO     | . stage-in = 0 s
[2026-03-24 19:56:19] 2026-03-24 23:55:47,009 | INFO     | . payload execution = 13293 s
[2026-03-24 19:56:19] 2026-03-24 23:55:47,010 | INFO     | . stage-out = 2 s
[2026-03-24 19:56:19] 2026-03-24 23:55:47,010 | INFO     | . log creation = 0 s
[2026-03-24 19:56:19] 2026-03-24 23:55:47,010 | INFO     | ..............................
[2026-03-24 19:56:19] 2026-03-24 23:55:47,088 | INFO     | 
[2026-03-24 19:56:19] 2026-03-24 23:55:47,088 | INFO     | job summary report
[2026-03-24 19:56:19] 2026-03-24 23:55:47,088 | INFO     | --------------------------------------------------
[2026-03-24 19:56:19] 2026-03-24 23:55:47,088 | INFO     | PanDA job id: 7056943873
[2026-03-24 19:56:19] 2026-03-24 23:55:47,089 | INFO     | task id: 49178885
[2026-03-24 19:56:19] 2026-03-24 23:55:47,089 | INFO     | errors: (none)
[2026-03-24 19:56:19] 2026-03-24 23:55:47,089 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-24 19:56:19] 2026-03-24 23:55:47,089 | INFO     | pilot state: finished 
[2026-03-24 19:56:19] 2026-03-24 23:55:47,089 | INFO     | transexitcode: 0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,089 | INFO     | exeerrorcode: 0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,090 | INFO     | exeerrordiag: 
[2026-03-24 19:56:19] 2026-03-24 23:55:47,090 | INFO     | exitcode: 0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,090 | INFO     | exitmsg: OK
[2026-03-24 19:56:19] 2026-03-24 23:55:47,090 | INFO     | cpuconsumptiontime: 141814 s
[2026-03-24 19:56:19] 2026-03-24 23:55:47,090 | INFO     | nevents: 400
[2026-03-24 19:56:19] 2026-03-24 23:55:47,090 | INFO     | neventsw: 0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,091 | INFO     | pid: 2834
[2026-03-24 19:56:19] 2026-03-24 23:55:47,091 | INFO     | pgrp: 2834
[2026-03-24 19:56:19] 2026-03-24 23:55:47,091 | INFO     | corecount: 12
[2026-03-24 19:56:19] 2026-03-24 23:55:47,091 | INFO     | event service: False
[2026-03-24 19:56:19] 2026-03-24 23:55:47,091 | INFO     | sizes: {0: 2280291, 11: 2280291, 13311: 2310585, 13314: 2319639, 13315: 2319777}
[2026-03-24 19:56:19] 2026-03-24 23:55:47,091 | INFO     | --------------------------------------------------
[2026-03-24 19:56:19] 2026-03-24 23:55:47,092 | INFO     | 
[2026-03-24 19:56:19] 2026-03-24 23:55:47,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-24 19:56:19] 2026-03-24 23:55:47,115 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,115 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,115 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,115 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,116 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,116 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,116 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,117 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,117 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,117 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-24 19:56:19] 2026-03-24 23:55:47,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,118 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-24 19:56:19] 2026-03-24 23:55:47,118 | INFO     | job 7056943873 has completed (purged errors)
[2026-03-24 19:56:19] 2026-03-24 23:55:47,118 | INFO     | overall cleanup function is called
[2026-03-24 19:56:19] 2026-03-24 23:55:48,126 | INFO     | --- collectZombieJob: --- 10, [2834]
[2026-03-24 19:56:19] 2026-03-24 23:55:48,127 | INFO     | zombie collector waiting for pid 2834
[2026-03-24 19:56:19] 2026-03-24 23:55:48,138 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-24 19:56:19] 2026-03-24 23:55:48,138 | INFO     | collected zombie processes
[2026-03-24 19:56:19] 2026-03-24 23:55:48,138 | INFO     | will attempt to kill all subprocesses of pid=2834
[2026-03-24 19:56:19] 2026-03-24 23:55:48,226 | INFO     | process IDs to be killed: [2834] (in reverse order)
[2026-03-24 19:56:19] 2026-03-24 23:55:48,322 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 19:56:19] 2026-03-24 23:55:48,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 19:56:19] 2026-03-24 23:55:48,325 | INFO     | did not find any defunct processes belonging to 2834
[2026-03-24 19:56:19] 2026-03-24 23:55:48,327 | INFO     | did not find any defunct processes belonging to 2834
[2026-03-24 19:56:19] 2026-03-24 23:55:48,327 | INFO     | ready for new job
[2026-03-24 19:56:19] 2026-03-24 23:55:48,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 19:56:19] 2026-03-24 23:55:48,328 | INFO     | **************************************
[2026-03-24 19:56:19] 2026-03-24 23:55:48,329 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 19:56:19] 2026-03-24 23:55:48,329 | INFO     | **************************************
[2026-03-24 19:56:19] 2026-03-24 23:55:48,329 | INFO     | 
[2026-03-24 19:56:19] 2026-03-24 23:55:48,329 | INFO     | architecture information:
[2026-03-24 19:56:19] 2026-03-24 23:55:48,330 | INFO     | executing command: cat /etc/os-release
[2026-03-24 19:56:19] 2026-03-24 23:55:48,346 | INFO     | cat /etc/os-release:
[2026-03-24 19:56:19] NAME="CentOS Linux"
[2026-03-24 19:56:19] VERSION="7 (Core)"
[2026-03-24 19:56:19] ID="centos"
[2026-03-24 19:56:19] ID_LIKE="rhel fedora"
[2026-03-24 19:56:19] VERSION_ID="7"
[2026-03-24 19:56:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 19:56:19] ANSI_COLOR="0;31"
[2026-03-24 19:56:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 19:56:19] HOME_URL="https://www.centos.org/"
[2026-03-24 19:56:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 19:56:19] 
[2026-03-24 19:56:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 19:56:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 19:56:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 19:56:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 19:56:19] 
[2026-03-24 19:56:19] 2026-03-24 23:55:48,346 | INFO     | **************************************
[2026-03-24 19:56:19] 2026-03-24 23:55:48,849 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-24 19:56:19] 2026-03-24 23:55:48,867 | INFO     | sufficient remaining disk space (29241638912 B)
[2026-03-24 19:56:19] 2026-03-24 23:55:48,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 19:56:19] 2026-03-24 23:55:48,867 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 19:56:19] 2026-03-24 23:55:48,867 | INFO     | update_server=False
[2026-03-24 19:56:19] 2026-03-24 23:55:48,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 19:56:19] 2026-03-24 23:55:48,868 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 19:56:19] 2026-03-24 23:55:48,868 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 19:56:19] 2026-03-24 23:55:48,913 | INFO     | all data control threads have been joined
[2026-03-24 19:56:19] 2026-03-24 23:55:49,270 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-24 19:56:19] 2026-03-24 23:55:49,270 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-24 19:56:19] 2026-03-24 23:55:49,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 19:56:19] 2026-03-24 23:55:49,271 | INFO     | will abort loop
[2026-03-24 19:56:19] 2026-03-24 23:55:49,435 | INFO     | all job control threads have been joined
[2026-03-24 19:56:19] 2026-03-24 23:55:49,873 | INFO     | [job] retrieve thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:49,874 | INFO     | [job] queue monitor thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:49,918 | INFO     | [data] control thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:49,997 | INFO     | all payload control threads have been joined
[2026-03-24 19:56:19] 2026-03-24 23:55:50,219 | INFO     | [payload] failed_post thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:50,276 | INFO     | [job] job monitor thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:50,319 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:50,378 | INFO     | [payload] validate_post thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:50,440 | INFO     | [job] control thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:50,724 | INFO     | [data] copytool_in thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:50,769 | INFO     | [job] validate thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:50,790 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:50,874 | INFO     | [data] copytool_out thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:51,002 | INFO     | [payload] control thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:51,187 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:51,360 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:55:51,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 19:56:19] 2026-03-24 23:55:55,563 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 19:56:19] 2026-03-24 23:56:01,497 | INFO     | [monitor] cgroup control has ended
[2026-03-24 19:56:19] 2026-03-24 23:56:03,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139639353833280)>', '<ExcThread(monitor, started 139638169659136)>']
[2026-03-24 19:56:19] 2026-03-24 23:56:08,167 | INFO     | all workflow threads have been joined
[2026-03-24 19:56:19] 2026-03-24 23:56:08,167 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 19:56:19] 2026-03-24 23:56:08,168 | INFO     | traces error code: 0
[2026-03-24 19:56:19] 2026-03-24 23:56:08,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 19:56:19] 2026-03-24 23:56:18,717 | INFO     | PID=32696 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-24 19:56:19] 2026-03-24 23:56:18,718 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 19:56:19] 2026-03-24 23:56:18,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 19:56:19] 2026-03-24 23:56:18,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 19:56:19] 2026-03-24 23:56:18,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 19:56:19] 2026-03-24 23:56:18,718 | INFO     | [monitor] control thread has ended
[2026-03-24 19:56:19] 2026-03-24 23:56:18,813 [wrapper] ==== pilot stdout END ====
[2026-03-24 19:56:19] 2026-03-24 23:56:18,817 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 19:56:19] 2026-03-24 23:56:18,820 [wrapper] pilotpid: 32696
[2026-03-24 19:56:19] 2026-03-24 23:56:18,825 [wrapper] Pilot exit status: 0
[2026-03-24 19:56:19] 2026-03-24 23:56:18,841 [wrapper] pandaids: 7056943873 7056943873
[2026-03-24 19:56:19] 2026-03-24 23:56:18,881 [wrapper] cleanup supervisor_pilot 25203 32697
[2026-03-24 19:56:19] 2026-03-24 23:56:18,885 [wrapper] Test setup, not cleaning
[2026-03-24 19:56:19] 2026-03-24 23:56:18,888 [wrapper] apfmon messages muted
[2026-03-24 19:56:19] 2026-03-24 23:56:18,893 [wrapper] ==== wrapper stdout END ====
[2026-03-24 19:56:19] 2026-03-24 23:56:18,896 [wrapper] ==== wrapper stderr END ====
[2026-03-24 19:56:19]  *** Error codes and diagnostics ***
[2026-03-24 19:56:19]     "exeErrorCode": 0,
[2026-03-24 19:56:19]     "exeErrorDiag": "",
[2026-03-24 19:56:19]     "pilotErrorCode": 0,
[2026-03-24 19:56:19]     "pilotErrorDiag": "",
[2026-03-24 19:56:19]  *** Listing of results directory ***
[2026-03-24 19:56:19] total 712776
[2026-03-24 19:56:19] drwx------ 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas    585013 Mar 16 10:08 pilot3.tar.gz
[2026-03-24 19:56:19] -rwx------ 1 boincer umatlas     36322 Mar 16 10:08 runpilot2-wrapper.sh
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas      5111 Mar 16 10:10 queuedata.json
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas       100 Mar 24 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 19:56:19] -rwxr-xr-x 1 boincer umatlas      7986 Mar 24 14:37 run_atlas
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas       105 Mar 24 14:37 job.xml
[2026-03-24 19:56:19] -rw-r--r-- 3 boincer umatlas 239989545 Mar 24 14:37 EVNT.49129985._000004.pool.root.1
[2026-03-24 19:56:19] -rw-r--r-- 3 boincer umatlas 239989545 Mar 24 14:37 ATLAS.root_0
[2026-03-24 19:56:19] -rw-r--r-- 2 boincer umatlas     15845 Mar 24 14:37 start_atlas.sh
[2026-03-24 19:56:19] drwxrwx--x 2 boincer umatlas      4096 Mar 24 14:37 shared
[2026-03-24 19:56:19] -rw-r--r-- 2 boincer umatlas    597528 Mar 24 14:37 input.tar.gz
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas         0 Mar 24 14:37 boinc_lockfile
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas      2600 Mar 24 16:13 pandaJob.out
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas        57 Mar 24 16:13 setup.sh.local
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas   1010852 Mar 24 16:13 agis_schedconf.cvmfs.json
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas       432 Mar 24 16:13 workernode_map.json
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas      5954 Mar 24 19:46 init_data.xml
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas 241176096 Mar 24 19:55 HITS.49178885._000098.pool.root.1
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas       531 Mar 24 19:55 boinc_task_state.xml
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas      1051 Mar 24 19:55 memory_monitor_summary.json
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas   1511579 Mar 24 19:55 agis_ddmendpoints.agis.ALL.json
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas    525136 Mar 24 19:55 log.49178885._000098.job.log.tgz.1
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas      6405 Mar 24 19:55 heartbeat.json
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas      8192 Mar 24 19:56 boinc_mmap_file
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas        29 Mar 24 19:56 wrapper_checkpoint.txt
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas        96 Mar 24 19:56 pilot_heartbeat.json
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas       745 Mar 24 19:56 pilotlog.txt
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas   1860468 Mar 24 19:56 log.49178885._000098.job.log.1
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas       357 Mar 24 19:56 output.list
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas       620 Mar 24 19:56 runtime_log
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas   2406400 Mar 24 19:56 result.tar.gz
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas       789 Mar 24 19:56 WUDODmonNM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmARuLDmVmboBn.diag
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas      9424 Mar 24 19:56 runtime_log.err
[2026-03-24 19:56:19] -rw-r--r-- 1 boincer umatlas     23079 Mar 24 19:56 stderr.txt
[2026-03-24 19:56:19] HITS file was successfully produced:
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas 241176096 Mar 24 19:55 shared/HITS.pool.root.1
[2026-03-24 19:56:19]  *** Contents of shared directory: ***
[2026-03-24 19:56:19] total 472852
[2026-03-24 19:56:19] -rw-r--r-- 3 boincer umatlas 239989545 Mar 24 14:37 ATLAS.root_0
[2026-03-24 19:56:19] -rw-r--r-- 2 boincer umatlas     15845 Mar 24 14:37 start_atlas.sh
[2026-03-24 19:56:19] -rw-r--r-- 2 boincer umatlas    597528 Mar 24 14:37 input.tar.gz
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas 241176096 Mar 24 19:55 HITS.pool.root.1
[2026-03-24 19:56:19] -rw------- 1 boincer umatlas   2406400 Mar 24 19:56 result.tar.gz
19:56:20 (28695): run_atlas exited; CPU time 141761.320445
19:56:20 (28695): called boinc_finish(0)

</stderr_txt>
]]>

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