Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:14:00 (1922566): wrapper (7.7.26015): starting
17:14:00 (1922566): wrapper: running run_atlas (--nthreads 4)
[2026-03-25 17:14:00] Arguments: --nthreads 4
[2026-03-25 17:14:00] Threads: 4
[2026-03-25 17:14:00] Checking for CVMFS
[2026-03-25 17:14:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 17:14:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 17:14:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 17:14:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 17:14:01] 2.9.2.0 1434237 4190 93984 157688 3 50 32081772 36864001 0 130560 0 1836113 99.984 148009 7425 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-25 17:14:01] CVMFS is ok
[2026-03-25 17:14:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 17:14:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 17:14:01] Further information can be found at the LHC@home message board.
[2026-03-25 17:14:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 17:14:01] Checking for apptainer binary...
[2026-03-25 17:14:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 17:14:01] Running /usr/bin/apptainer --version
[2026-03-25 17:14:01] apptainer version 1.4.1-1.1
[2026-03-25 17:14:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 17:14:01] magicA244a
[2026-03-25 17:14:01] apptainer works
[2026-03-25 17:14:01] Set ATHENA_PROC_NUMBER=4
[2026-03-25 17:14:01] Set ATHENA_CORE_NUMBER=4
[2026-03-25 17:14:01] Starting ATLAS job with PandaID=7056945078
[2026-03-25 17:14:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 19:52:41]  *** The last 200 lines of the pilot log: ***
[2026-03-25 19:52:41] 2026-03-25 18:52:09,670 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 19:52:41] 2026-03-25 18:52:09,670 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 19:52:41] 2026-03-25 18:52:09,670 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 19:52:41] 2026-03-25 18:52:09,670 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 19:52:41] 2026-03-25 18:52:09,670 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 19:52:41] 2026-03-25 18:52:09,670 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 19:52:41] 2026-03-25 18:52:09,671 | INFO     | job 7056945078 has completed (purged errors)
[2026-03-25 19:52:41] 2026-03-25 18:52:09,671 | INFO     | overall cleanup function is called
[2026-03-25 19:52:41] 2026-03-25 18:52:10,677 | INFO     | --- collectZombieJob: --- 10, [1931184]
[2026-03-25 19:52:41] 2026-03-25 18:52:10,678 | INFO     | zombie collector waiting for pid 1931184
[2026-03-25 19:52:41] 2026-03-25 18:52:10,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 19:52:41] 2026-03-25 18:52:10,678 | INFO     | collected zombie processes
[2026-03-25 19:52:41] 2026-03-25 18:52:10,678 | INFO     | will attempt to kill all subprocesses of pid=1931184
[2026-03-25 19:52:41] 2026-03-25 18:52:10,720 | INFO     | process IDs to be killed: [1931184] (in reverse order)
[2026-03-25 19:52:41] 2026-03-25 18:52:10,747 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 19:52:41] 2026-03-25 18:52:10,747 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 19:52:41] 2026-03-25 18:52:10,748 | INFO     | did not find any defunct processes belonging to 1931184
[2026-03-25 19:52:41] 2026-03-25 18:52:10,749 | INFO     | did not find any defunct processes belonging to 1931184
[2026-03-25 19:52:41] 2026-03-25 18:52:10,750 | INFO     | ready for new job
[2026-03-25 19:52:41] 2026-03-25 18:52:10,750 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 19:52:41] 2026-03-25 18:52:10,750 | INFO     | **************************************
[2026-03-25 19:52:41] 2026-03-25 18:52:10,750 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 19:52:41] 2026-03-25 18:52:10,750 | INFO     | **************************************
[2026-03-25 19:52:41] 2026-03-25 18:52:10,750 | INFO     | 
[2026-03-25 19:52:41] 2026-03-25 18:52:10,751 | INFO     | architecture information:
[2026-03-25 19:52:41] 2026-03-25 18:52:10,751 | INFO     | executing command: cat /etc/os-release
[2026-03-25 19:52:41] 2026-03-25 18:52:10,761 | INFO     | cat /etc/os-release:
[2026-03-25 19:52:41] NAME="CentOS Linux"
[2026-03-25 19:52:41] VERSION="7 (Core)"
[2026-03-25 19:52:41] ID="centos"
[2026-03-25 19:52:41] ID_LIKE="rhel fedora"
[2026-03-25 19:52:41] VERSION_ID="7"
[2026-03-25 19:52:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 19:52:41] ANSI_COLOR="0;31"
[2026-03-25 19:52:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 19:52:41] HOME_URL="https://www.centos.org/"
[2026-03-25 19:52:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 19:52:41] 
[2026-03-25 19:52:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 19:52:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 19:52:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 19:52:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 19:52:41] 
[2026-03-25 19:52:41] 2026-03-25 18:52:10,761 | INFO     | **************************************
[2026-03-25 19:52:41] 2026-03-25 18:52:11,265 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-25 19:52:41] 2026-03-25 18:52:11,279 | INFO     | sufficient remaining disk space (326686998528 B)
[2026-03-25 19:52:41] 2026-03-25 18:52:11,279 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 19:52:41] 2026-03-25 18:52:11,280 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 19:52:41] 2026-03-25 18:52:11,280 | INFO     | update_server=False
[2026-03-25 19:52:41] 2026-03-25 18:52:11,280 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 19:52:41] 2026-03-25 18:52:11,280 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 19:52:41] 2026-03-25 18:52:11,280 | INFO     | aborting loop
[2026-03-25 19:52:41] 2026-03-25 18:52:11,638 | INFO     | all job control threads have been joined
[2026-03-25 19:52:41] 2026-03-25 18:52:12,020 | INFO     | all data control threads have been joined
[2026-03-25 19:52:41] 2026-03-25 18:52:12,172 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 19:52:41] 2026-03-25 18:52:12,223 | INFO     | all payload control threads have been joined
[2026-03-25 19:52:41] 2026-03-25 18:52:12,285 | INFO     | [job] job monitor thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:12,286 | INFO     | [job] retrieve thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:12,407 | INFO     | [payload] failed_post thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:12,644 | INFO     | [job] control thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:12,651 | INFO     | [job] validate thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:12,653 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:12,674 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:12,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 19:52:41] 2026-03-25 18:52:13,025 | INFO     | [data] control thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:13,161 | INFO     | [data] copytool_in thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:13,229 | INFO     | [payload] control thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:13,334 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:13,762 | INFO     | [payload] validate_post thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:14,178 | INFO     | [data] copytool_out thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:14,210 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 19:52:41] 2026-03-25 18:52:15,216 | INFO     | [job] queue monitor thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:16,704 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:21,960 | INFO     | job.realtimelogging is not enabled
[2026-03-25 19:52:41] 2026-03-25 18:52:22,963 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 19:52:41] 2026-03-25 18:52:23,160 | INFO     | [monitor] cgroup control has ended
[2026-03-25 19:52:41] 2026-03-25 18:52:25,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474859558720)>', '<ExcThread(monitor, started 140474127992576)>']
[2026-03-25 19:52:41] 2026-03-25 18:52:30,217 | INFO     | all workflow threads have been joined
[2026-03-25 19:52:41] 2026-03-25 18:52:30,217 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 19:52:41] 2026-03-25 18:52:30,217 | INFO     | traces error code: 0
[2026-03-25 19:52:41] 2026-03-25 18:52:30,217 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 19:52:41] 2026-03-25 18:52:41,337 | INFO     | PID=1926682 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-25 19:52:41] 2026-03-25 18:52:41,338 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 19:52:41] 2026-03-25 18:52:41,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 19:52:41] 2026-03-25 18:52:41,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 19:52:41] 2026-03-25 18:52:41,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 19:52:41] 2026-03-25 18:52:41,338 | INFO     | [monitor] control thread has ended
[2026-03-25 19:52:41] 2026-03-25 18:52:41,387 [wrapper] ==== pilot stdout END ====
[2026-03-25 19:52:41] 2026-03-25 18:52:41,390 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 19:52:41] 2026-03-25 18:52:41,392 [wrapper] pilotpid: 1926682
[2026-03-25 19:52:41] 2026-03-25 18:52:41,395 [wrapper] Pilot exit status: 0
[2026-03-25 19:52:41] 2026-03-25 18:52:41,403 [wrapper] pandaids: 7056945078
[2026-03-25 19:52:41] 2026-03-25 18:52:41,421 [wrapper] cleanup supervisor_pilot 1937402 1926683
[2026-03-25 19:52:41] 2026-03-25 18:52:41,424 [wrapper] Test setup, not cleaning
[2026-03-25 19:52:41] 2026-03-25 18:52:41,426 [wrapper] apfmon messages muted
[2026-03-25 19:52:41] 2026-03-25 18:52:41,429 [wrapper] ==== wrapper stdout END ====
[2026-03-25 19:52:41] 2026-03-25 18:52:41,431 [wrapper] ==== wrapper stderr END ====
[2026-03-25 19:52:41]  *** Error codes and diagnostics ***
[2026-03-25 19:52:41]     "exeErrorCode": 0,
[2026-03-25 19:52:41]     "exeErrorDiag": "",
[2026-03-25 19:52:41]     "pilotErrorCode": 0,
[2026-03-25 19:52:41]     "pilotErrorDiag": "",
[2026-03-25 19:52:41]  *** Listing of results directory ***
[2026-03-25 19:52:41] total 471836
[2026-03-25 19:52:41] -rwx------ 1 boinc boinc     36322 Mar 16 16:03 runpilot2-wrapper.sh
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc      5111 Mar 16 16:03 queuedata.json
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc    585013 Mar 16 16:03 pilot3.tar.gz
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc       100 Mar 25 17:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 19:52:41] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 17:14 run_atlas
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc       105 Mar 25 17:14 job.xml
[2026-03-25 19:52:41] -rw-r--r-- 2 boinc boinc 237821567 Mar 25 17:14 EVNT.49130187._000001.pool.root.1
[2026-03-25 19:52:41] drwxrwx--x 2 boinc boinc      4096 Mar 25 17:14 shared
[2026-03-25 19:52:41] -rw-r--r-- 2 boinc boinc    597516 Mar 25 17:14 input.tar.gz
[2026-03-25 19:52:41] -rw-r--r-- 2 boinc boinc     15845 Mar 25 17:14 start_atlas.sh
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc         0 Mar 25 17:14 boinc_setup_complete
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc      6437 Mar 25 17:14 init_data.xml
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc         0 Mar 25 17:14 boinc_lockfile
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc      2614 Mar 25 17:14 pandaJob.out
[2026-03-25 19:52:41] -rw------- 1 boinc boinc   1011933 Mar 25 17:14 agis_schedconf.cvmfs.json
[2026-03-25 19:52:41] -rw------- 1 boinc boinc   1511579 Mar 25 17:14 agis_ddmendpoints.agis.ALL.json
[2026-03-25 19:52:41] -rw------- 1 boinc boinc       427 Mar 25 17:14 workernode_map.json
[2026-03-25 19:52:41] drwx------ 5 boinc boinc      4096 Mar 25 17:14 pilot3
[2026-03-25 19:52:41] -rw------- 1 boinc boinc 238069076 Mar 25 19:51 HITS.49178954._000001.pool.root.1
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc       529 Mar 25 19:51 boinc_task_state.xml
[2026-03-25 19:52:41] -rw------- 1 boinc boinc        95 Mar 25 19:51 pilot_heartbeat.json
[2026-03-25 19:52:41] -rw------- 1 boinc boinc      1029 Mar 25 19:52 memory_monitor_summary.json
[2026-03-25 19:52:41] -rw------- 1 boinc boinc    319188 Mar 25 19:52 log.49178954._000001.job.log.tgz.1
[2026-03-25 19:52:41] -rw------- 1 boinc boinc      6292 Mar 25 19:52 heartbeat.json
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc      8192 Mar 25 19:52 boinc_mmap_file
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc        27 Mar 25 19:52 wrapper_checkpoint.txt
[2026-03-25 19:52:41] -rw------- 1 boinc boinc       747 Mar 25 19:52 pilotlog.txt
[2026-03-25 19:52:41] -rw------- 1 boinc boinc   1351044 Mar 25 19:52 log.49178954._000001.job.log.1
[2026-03-25 19:52:41] -rw------- 1 boinc boinc       357 Mar 25 19:52 output.list
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc       620 Mar 25 19:52 runtime_log
[2026-03-25 19:52:41] -rw------- 1 boinc boinc   1689600 Mar 25 19:52 result.tar.gz
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc      8916 Mar 25 19:52 runtime_log.err
[2026-03-25 19:52:41] -rw------- 1 boinc boinc       662 Mar 25 19:52 ZuRKDmmeOM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUfxLDmxRp91m.diag
[2026-03-25 19:52:41] -rw-r--r-- 1 boinc boinc     11512 Mar 25 19:52 stderr.txt
[2026-03-25 19:52:41] HITS file was successfully produced:
[2026-03-25 19:52:41] -rw------- 1 boinc boinc 238069076 Mar 25 19:51 shared/HITS.pool.root.1
[2026-03-25 19:52:41]  *** Contents of shared directory: ***
[2026-03-25 19:52:41] total 467000
[2026-03-25 19:52:41] -rw-r--r-- 2 boinc boinc 237821567 Mar 25 17:14 ATLAS.root_0
[2026-03-25 19:52:41] -rw-r--r-- 2 boinc boinc    597516 Mar 25 17:14 input.tar.gz
[2026-03-25 19:52:41] -rw-r--r-- 2 boinc boinc     15845 Mar 25 17:14 start_atlas.sh
[2026-03-25 19:52:41] -rw------- 1 boinc boinc 238069076 Mar 25 19:51 HITS.pool.root.1
[2026-03-25 19:52:41] -rw------- 1 boinc boinc   1689600 Mar 25 19:52 result.tar.gz
19:52:42 (1922566): run_atlas exited; CPU time 36318.093695
19:52:42 (1922566): called boinc_finish(0)

</stderr_txt>
]]>

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