Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:58:33 (358750): wrapper (7.7.26015): starting
01:58:33 (358750): wrapper: running run_atlas (--nthreads 3)
[2026-03-26 01:58:33] Arguments: --nthreads 3
[2026-03-26 01:58:33] Threads: 3
[2026-03-26 01:58:33] Checking for CVMFS
[2026-03-26 01:58:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 01:58:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 01:58:34] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 01:58:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 01:58:35] 2.9.2.0 4193720 4641 84860 157702 3 50 28968762 36864000 0 130560 0 1359798 99.977 156715 7430 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-26 01:58:35] CVMFS is ok
[2026-03-26 01:58:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 01:58:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 01:58:35] Further information can be found at the LHC@home message board.
[2026-03-26 01:58:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 01:58:35] Checking for apptainer binary...
[2026-03-26 01:58:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 01:58:35] Running /usr/bin/apptainer --version
[2026-03-26 01:58:35] apptainer version 1.4.1-1.1
[2026-03-26 01:58:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 01:58:35] legendA257a
[2026-03-26 01:58:35] apptainer works
[2026-03-26 01:58:35] Set ATHENA_PROC_NUMBER=3
[2026-03-26 01:58:35] Set ATHENA_CORE_NUMBER=3
[2026-03-26 01:58:35] Starting ATLAS job with PandaID=7056943732
[2026-03-26 01:58:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 06:02:10]  *** The last 200 lines of the pilot log: ***
[2026-03-26 06:02:10] 2026-03-26 05:01:28,655 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-26 06:02:10] 2026-03-26 05:01:28,655 | INFO     | collected zombie processes
[2026-03-26 06:02:10] 2026-03-26 05:01:28,656 | INFO     | will attempt to kill all subprocesses of pid=367210
[2026-03-26 06:02:10] 2026-03-26 05:01:28,695 | INFO     | process IDs to be killed: [367210] (in reverse order)
[2026-03-26 06:02:10] 2026-03-26 05:01:28,721 | WARNING  | found no corresponding commands to process id(s)
[2026-03-26 06:02:10] 2026-03-26 05:01:28,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-26 06:02:10] 2026-03-26 05:01:28,722 | INFO     | did not find any defunct processes belonging to 367210
[2026-03-26 06:02:10] 2026-03-26 05:01:28,723 | INFO     | did not find any defunct processes belonging to 367210
[2026-03-26 06:02:10] 2026-03-26 05:01:28,723 | INFO     | ready for new job
[2026-03-26 06:02:10] 2026-03-26 05:01:28,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-26 06:02:10] 2026-03-26 05:01:28,724 | INFO     | **************************************
[2026-03-26 06:02:10] 2026-03-26 05:01:28,724 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-26 06:02:10] 2026-03-26 05:01:28,724 | INFO     | **************************************
[2026-03-26 06:02:10] 2026-03-26 05:01:28,724 | INFO     | 
[2026-03-26 06:02:10] 2026-03-26 05:01:28,724 | INFO     | architecture information:
[2026-03-26 06:02:10] 2026-03-26 05:01:28,724 | INFO     | executing command: cat /etc/os-release
[2026-03-26 06:02:10] 2026-03-26 05:01:28,734 | INFO     | cat /etc/os-release:
[2026-03-26 06:02:10] NAME="CentOS Linux"
[2026-03-26 06:02:10] VERSION="7 (Core)"
[2026-03-26 06:02:10] ID="centos"
[2026-03-26 06:02:10] ID_LIKE="rhel fedora"
[2026-03-26 06:02:10] VERSION_ID="7"
[2026-03-26 06:02:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-26 06:02:10] ANSI_COLOR="0;31"
[2026-03-26 06:02:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-26 06:02:10] HOME_URL="https://www.centos.org/"
[2026-03-26 06:02:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-26 06:02:10] 
[2026-03-26 06:02:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-26 06:02:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-26 06:02:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-26 06:02:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-26 06:02:10] 
[2026-03-26 06:02:10] 2026-03-26 05:01:28,734 | INFO     | **************************************
[2026-03-26 06:02:10] 2026-03-26 05:01:29,237 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-26 06:02:10] 2026-03-26 05:01:29,251 | INFO     | sufficient remaining disk space (374497869824 B)
[2026-03-26 06:02:10] 2026-03-26 05:01:29,252 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-26 06:02:10] 2026-03-26 05:01:29,252 | INFO     | current server update state: UPDATING_FINAL
[2026-03-26 06:02:10] 2026-03-26 05:01:29,252 | INFO     | update_server=False
[2026-03-26 06:02:10] 2026-03-26 05:01:29,252 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-26 06:02:10] 2026-03-26 05:01:29,252 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-26 06:02:10] 2026-03-26 05:01:29,364 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-26 06:02:10] 2026-03-26 05:01:29,630 | INFO     | all data control threads have been joined
[2026-03-26 06:02:10] 2026-03-26 05:01:29,636 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 06:02:10] 2026-03-26 05:01:29,637 | INFO     | aborting loop
[2026-03-26 06:02:10] 2026-03-26 05:01:29,846 | INFO     | all job control threads have been joined
[2026-03-26 06:02:10] 2026-03-26 05:01:30,258 | INFO     | [job] queue monitor thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,258 | INFO     | [job] retrieve thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,400 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,441 | INFO     | all payload control threads have been joined
[2026-03-26 06:02:10] 2026-03-26 05:01:30,636 | INFO     | [data] control thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,642 | INFO     | [job] job monitor thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,699 | INFO     | [job] validate thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,729 | INFO     | [payload] validate_post thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,785 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,801 | INFO     | [data] copytool_in thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,824 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,851 | INFO     | [job] control thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:30,952 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:31,213 | INFO     | [payload] failed_post thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:31,370 | INFO     | [data] copytool_out thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:31,447 | INFO     | [payload] control thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:32,512 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-26 06:02:10] 2026-03-26 05:01:36,519 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 06:02:10] 2026-03-26 05:01:59,940 | INFO     | PID=362786 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-26 06:02:10] 2026-03-26 05:01:59,940 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 06:02:10] 2026-03-26 05:01:59,940 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 06:02:10] 2026-03-26 05:01:59,940 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 06:02:10] 2026-03-26 05:02:04,055 | INFO     | [monitor] cgroup control has ended
[2026-03-26 06:02:10] 2026-03-26 05:02:05,434 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140023378917184)>', '<ExcThread(monitor, started 140022871205632)>']
[2026-03-26 06:02:10] 2026-03-26 05:02:05,973 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 06:02:10] 2026-03-26 05:02:05,973 | INFO     | [monitor] control thread has ended
[2026-03-26 06:02:10] 2026-03-26 05:02:10,460 | INFO     | all workflow threads have been joined
[2026-03-26 06:02:10] 2026-03-26 05:02:10,460 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 06:02:10] 2026-03-26 05:02:10,460 | INFO     | traces error code: 0
[2026-03-26 06:02:10] 2026-03-26 05:02:10,460 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 06:02:10] 2026-03-26 05:02:10,510 [wrapper] ==== pilot stdout END ====
[2026-03-26 06:02:10] 2026-03-26 05:02:10,513 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 06:02:10] 2026-03-26 05:02:10,515 [wrapper] pilotpid: 362786
[2026-03-26 06:02:10] 2026-03-26 05:02:10,518 [wrapper] Pilot exit status: 0
[2026-03-26 06:02:10] 2026-03-26 05:02:10,526 [wrapper] pandaids: 7056943732
[2026-03-26 06:02:10] 2026-03-26 05:02:10,543 [wrapper] cleanup supervisor_pilot  374431 362787
[2026-03-26 06:02:10] 2026-03-26 05:02:10,545 [wrapper] Test setup, not cleaning
[2026-03-26 06:02:10] 2026-03-26 05:02:10,548 [wrapper] apfmon messages muted
[2026-03-26 06:02:10] 2026-03-26 05:02:10,551 [wrapper] ==== wrapper stdout END ====
[2026-03-26 06:02:10] 2026-03-26 05:02:10,553 [wrapper] ==== wrapper stderr END ====
[2026-03-26 06:02:10]  *** Error codes and diagnostics ***
[2026-03-26 06:02:10]     "exeErrorCode": 0,
[2026-03-26 06:02:10]     "exeErrorDiag": "",
[2026-03-26 06:02:10]     "pilotErrorCode": 0,
[2026-03-26 06:02:10]     "pilotErrorDiag": "",
[2026-03-26 06:02:10]  *** Listing of results directory ***
[2026-03-26 06:02:10] total 501284
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc    585013 Mar 16 15:05 pilot3.tar.gz
[2026-03-26 06:02:10] -rwx------ 1 boinc boinc     36322 Mar 16 15:06 runpilot2-wrapper.sh
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc      5111 Mar 16 15:07 queuedata.json
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc       100 Mar 26 01:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 06:02:10] -rwxr-xr-x 1 boinc boinc      7986 Mar 26 01:58 run_atlas
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc       105 Mar 26 01:58 job.xml
[2026-03-26 06:02:10] -rw-r--r-- 2 boinc boinc 247433318 Mar 26 01:58 EVNT.49129889._000011.pool.root.1
[2026-03-26 06:02:10] -rw-r--r-- 2 boinc boinc    597555 Mar 26 01:58 input.tar.gz
[2026-03-26 06:02:10] -rw-r--r-- 2 boinc boinc     15845 Mar 26 01:58 start_atlas.sh
[2026-03-26 06:02:10] drwxrwx--x 2 boinc boinc      4096 Mar 26 01:58 shared
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc         0 Mar 26 01:58 boinc_setup_complete
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc      6449 Mar 26 01:58 init_data.xml
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc         0 Mar 26 01:58 boinc_lockfile
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc      2660 Mar 26 01:58 pandaJob.out
[2026-03-26 06:02:10] -rw------- 1 boinc boinc   1012171 Mar 26 01:58 agis_schedconf.cvmfs.json
[2026-03-26 06:02:10] -rw------- 1 boinc boinc       428 Mar 26 01:58 workernode_map.json
[2026-03-26 06:02:10] drwx------ 5 boinc boinc      4096 Mar 26 01:58 pilot3
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc       530 Mar 26 06:00 boinc_task_state.xml
[2026-03-26 06:02:10] -rw------- 1 boinc boinc 257048134 Mar 26 06:01 HITS.49178853._000273.pool.root.1
[2026-03-26 06:02:10] -rw------- 1 boinc boinc      1015 Mar 26 06:01 memory_monitor_summary.json
[2026-03-26 06:02:10] -rw------- 1 boinc boinc   1511579 Mar 26 06:01 agis_ddmendpoints.agis.ALL.json
[2026-03-26 06:02:10] -rw------- 1 boinc boinc    400748 Mar 26 06:01 log.49178853._000273.job.log.tgz.1
[2026-03-26 06:02:10] -rw------- 1 boinc boinc      6302 Mar 26 06:01 heartbeat.json
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc        28 Mar 26 06:01 wrapper_checkpoint.txt
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc      8192 Mar 26 06:01 boinc_mmap_file
[2026-03-26 06:02:10] -rw------- 1 boinc boinc        95 Mar 26 06:01 pilot_heartbeat.json
[2026-03-26 06:02:10] -rw------- 1 boinc boinc      4747 Mar 26 06:02 pilotlog.txt
[2026-03-26 06:02:10] -rw------- 1 boinc boinc   2048083 Mar 26 06:02 log.49178853._000273.job.log.1
[2026-03-26 06:02:10] -rw------- 1 boinc boinc       357 Mar 26 06:02 output.list
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc       620 Mar 26 06:02 runtime_log
[2026-03-26 06:02:10] -rw------- 1 boinc boinc   2467840 Mar 26 06:02 result.tar.gz
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc      8922 Mar 26 06:02 runtime_log.err
[2026-03-26 06:02:10] -rw------- 1 boinc boinc       665 Mar 26 06:02 U3hNDmLlNM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmyKuLDmb7ppCo.diag
[2026-03-26 06:02:10] -rw-r--r-- 1 boinc boinc     10408 Mar 26 06:02 stderr.txt
[2026-03-26 06:02:10] HITS file was successfully produced:
[2026-03-26 06:02:10] -rw------- 1 boinc boinc 257048134 Mar 26 06:01 shared/HITS.pool.root.1
[2026-03-26 06:02:10]  *** Contents of shared directory: ***
[2026-03-26 06:02:10] total 495680
[2026-03-26 06:02:10] -rw-r--r-- 2 boinc boinc 247433318 Mar 26 01:58 ATLAS.root_0
[2026-03-26 06:02:10] -rw-r--r-- 2 boinc boinc    597555 Mar 26 01:58 input.tar.gz
[2026-03-26 06:02:10] -rw-r--r-- 2 boinc boinc     15845 Mar 26 01:58 start_atlas.sh
[2026-03-26 06:02:10] -rw------- 1 boinc boinc 257048134 Mar 26 06:01 HITS.pool.root.1
[2026-03-26 06:02:10] -rw------- 1 boinc boinc   2467840 Mar 26 06:02 result.tar.gz
06:02:12 (358750): run_atlas exited; CPU time 42359.207499
06:02:12 (358750): called boinc_finish(0)

</stderr_txt>
]]>

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