Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:53:25 (1850635): wrapper (7.7.26015): starting
11:53:25 (1850635): wrapper: running run_atlas (--nthreads 8)
[2026-03-24 11:53:25] Arguments: --nthreads 8
[2026-03-24 11:53:25] Threads: 8
[2026-03-24 11:53:25] Checking for CVMFS
[2026-03-24 11:53:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 11:53:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 11:53:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 11:53:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 11:53:27] 2.13.3.0 6592 120754 358380 157649 1 337 27394358 40960001 17919 16776704 0 229518395 99.670 204198999 36029 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-24 11:53:27] CVMFS is ok
[2026-03-24 11:53:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 11:53:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 11:53:27] Further information can be found at the LHC@home message board.
[2026-03-24 11:53:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 11:53:27] Checking for apptainer binary...
[2026-03-24 11:53:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 11:53:27] Running /usr/bin/apptainer --version
[2026-03-24 11:53:27] apptainer version 1.4.5-2.el9
[2026-03-24 11:53:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 11:53:28] c-211-35-2.aglt2.org
[2026-03-24 11:53:28] apptainer works
[2026-03-24 11:53:28] Set ATHENA_PROC_NUMBER=8
[2026-03-24 11:53:28] Set ATHENA_CORE_NUMBER=8
[2026-03-24 11:53:28] Starting ATLAS job with PandaID=7056897373
[2026-03-24 11:53:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:20:08 (1850635): BOINC client no longer exists - exiting
17:20:08 (1850635): timer handler: client dead, exiting
17:31:00 (2640098): wrapper (7.7.26015): starting
17:31:00 (2640098): wrapper: running run_atlas (--nthreads 9)
[2026-03-24 17:31:00] Arguments: --nthreads 9
[2026-03-24 17:31:00] Threads: 9
[2026-03-24 17:31:00] This job has been restarted, cleaning up previous attempt
[2026-03-24 17:31:00] Checking for CVMFS
[2026-03-24 17:31:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 17:31:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 17:31:00] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 17:31:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 17:31:00] 2.13.3.0 6592 121091 355812 157658 0 283 32718582 40960001 10301 16776704 0 229994483 99.668 204975554 36036 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-24 17:31:00] CVMFS is ok
[2026-03-24 17:31:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 17:31:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 17:31:00] Further information can be found at the LHC@home message board.
[2026-03-24 17:31:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 17:31:00] Checking for apptainer binary...
[2026-03-24 17:31:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 17:31:00] Running /usr/bin/apptainer --version
[2026-03-24 17:31:00] apptainer version 1.4.5-2.el9
[2026-03-24 17:31:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 17:31:00] c-211-35-2.aglt2.org
[2026-03-24 17:31:00] apptainer works
[2026-03-24 17:31:01] Set ATHENA_PROC_NUMBER=9
[2026-03-24 17:31:01] Set ATHENA_CORE_NUMBER=9
[2026-03-24 17:31:01] Starting ATLAS job with PandaID=7056897373
[2026-03-24 17:31:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 09:51:11]  *** The last 200 lines of the pilot log: ***
[2026-03-25 09:51:11] 2026-03-25 13:50:11,161 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 09:51:11] 2026-03-25 13:50:11,162 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 09:51:11] 2026-03-25 13:50:11,162 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 09:51:11] 2026-03-25 13:50:11,668 | INFO     | fitting pss+swap vs Time
[2026-03-25 09:51:11] 2026-03-25 13:50:11,669 | INFO     | sum of square deviations: 276917772848.2988
[2026-03-25 09:51:11] 2026-03-25 13:50:11,834 | INFO     | sum of deviations: 87586174207.51372
[2026-03-25 09:51:11] 2026-03-25 13:50:11,834 | INFO     | mean x: 1774417249.386293
[2026-03-25 09:51:11] 2026-03-25 13:50:11,834 | INFO     | mean y: 2576855.2056074766
[2026-03-25 09:51:11] 2026-03-25 13:50:11,834 | INFO     | intersect: -558652627.1891694
[2026-03-25 09:51:11] 2026-03-25 13:50:11,840 | INFO     | chi2: 4.030808828207987
[2026-03-25 09:51:11] 2026-03-25 13:50:11,841 | INFO     | sum of square deviations: 272626819805.04858
[2026-03-25 09:51:11] 2026-03-25 13:50:11,888 | INFO     | sum of deviations: 292141204225.22595
[2026-03-25 09:51:11] 2026-03-25 13:50:11,888 | INFO     | mean x: 1774417096.888309
[2026-03-25 09:51:11] 2026-03-25 13:50:11,889 | INFO     | mean y: 2584109.8058455116
[2026-03-25 09:51:11] 2026-03-25 13:50:11,889 | INFO     | intersect: -1898844179.0670767
[2026-03-25 09:51:11] 2026-03-25 13:50:11,890 | INFO     | chi2: 1.5642682018488079
[2026-03-25 09:51:11] 2026-03-25 13:50:11,890 | INFO     | current chi2=1.5642682018488079 (change=61.192200659532425 %)
[2026-03-25 09:51:11] 2026-03-25 13:50:11,891 | INFO     | sum of square deviations: 268380425736.79095
[2026-03-25 09:51:11] 2026-03-25 13:50:11,928 | INFO     | sum of deviations: 290467007293.665
[2026-03-25 09:51:11] 2026-03-25 13:50:11,928 | INFO     | mean x: 1774416944.3903463
[2026-03-25 09:51:11] 2026-03-25 13:50:11,929 | INFO     | mean y: 2584049.681007345
[2026-03-25 09:51:11] 2026-03-25 13:50:11,929 | INFO     | intersect: -1917859954.807277
[2026-03-25 09:51:11] 2026-03-25 13:50:11,930 | INFO     | chi2: 1.5642178582116573
[2026-03-25 09:51:11] 2026-03-25 13:50:11,930 | INFO     | current chi2=1.5642178582116573 (change=0.0032183507336604536 %)
[2026-03-25 09:51:11] 2026-03-25 13:50:11,930 | INFO     | right removable region: 952
[2026-03-25 09:51:11] 2026-03-25 13:50:11,931 | INFO     | sum of square deviations: 272626592885.04868
[2026-03-25 09:51:11] 2026-03-25 13:50:11,955 | INFO     | sum of deviations: -74361266232.95407
[2026-03-25 09:51:11] 2026-03-25 13:50:11,955 | INFO     | mean x: 1774417401.888309
[2026-03-25 09:51:11] 2026-03-25 13:50:11,955 | INFO     | mean y: 2582598.682672234
[2026-03-25 09:51:11] 2026-03-25 13:50:11,955 | INFO     | intersect: 486570325.02248037
[2026-03-25 09:51:11] 2026-03-25 13:50:11,956 | INFO     | chi2: 2.6046135256588103
[2026-03-25 09:51:11] 2026-03-25 13:50:11,956 | INFO     | current chi2=2.6046135256588103 (change=35.38236029872032 %)
[2026-03-25 09:51:11] 2026-03-25 13:50:11,958 | INFO     | sum of square deviations: 268380089016.34836
[2026-03-25 09:51:11] 2026-03-25 13:50:12,020 | INFO     | sum of deviations: -117265433165.84055
[2026-03-25 09:51:11] 2026-03-25 13:50:12,021 | INFO     | mean x: 1774417554.3882477
[2026-03-25 09:51:11] 2026-03-25 13:50:12,021 | INFO     | mean y: 2584139.442812172
[2026-03-25 09:51:11] 2026-03-25 13:50:12,021 | INFO     | intersect: 777894423.8049812
[2026-03-25 09:51:11] 2026-03-25 13:50:12,022 | INFO     | chi2: 2.5411380794043725
[2026-03-25 09:51:11] 2026-03-25 13:50:12,022 | INFO     | current chi2=2.5411380794043725 (change=2.4370389552662073 %)
[2026-03-25 09:51:11] 2026-03-25 13:50:12,022 | INFO     | left removable region: 20
[2026-03-25 09:51:11] 2026-03-25 13:50:12,037 | INFO     | sum of square deviations: 251026403360.05463
[2026-03-25 09:51:11] 2026-03-25 13:50:12,248 | INFO     | sum of deviations: 68853472352.6008
[2026-03-25 09:51:11] 2026-03-25 13:50:12,248 | INFO     | mean x: 1774417523.891631
[2026-03-25 09:51:11] 2026-03-25 13:50:12,248 | INFO     | mean y: 2592099.025751073
[2026-03-25 09:51:11] 2026-03-25 13:50:12,248 | INFO     | intersect: -484108926.3958808
[2026-03-25 09:51:11] 2026-03-25 13:50:12,341 | INFO     | chi2: 0.03369680370833701
[2026-03-25 09:51:11] 2026-03-25 13:50:12,341 | INFO     | current memory leak: 0.27 B/s (using 932 data points, chi2=0.03)
[2026-03-25 09:51:11] 2026-03-25 13:50:12,342 | INFO     | could have reported an average CPU frequency of 2641 MHz (36 samples)
[2026-03-25 09:51:11] 2026-03-25 13:50:12,342 | INFO     | ..............................
[2026-03-25 09:51:11] 2026-03-25 13:50:12,342 | INFO     | . Timing measurements:
[2026-03-25 09:51:11] 2026-03-25 13:50:12,342 | INFO     | . get job = 0 s
[2026-03-25 09:51:11] 2026-03-25 13:50:12,343 | INFO     | . initial setup = 2 s
[2026-03-25 09:51:11] 2026-03-25 13:50:12,343 | INFO     | . payload setup = 12 s
[2026-03-25 09:51:11] 2026-03-25 13:50:12,343 | INFO     | . stage-in = 0 s
[2026-03-25 09:51:11] 2026-03-25 13:50:12,343 | INFO     | . payload execution = 58693 s
[2026-03-25 09:51:11] 2026-03-25 13:50:12,343 | INFO     | . stage-out = 8 s
[2026-03-25 09:51:11] 2026-03-25 13:50:12,343 | INFO     | . log creation = 2 s
[2026-03-25 09:51:11] 2026-03-25 13:50:12,343 | INFO     | ..............................
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | 
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | job summary report
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | --------------------------------------------------
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | PanDA job id: 7056897373
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | task id: 49176441
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | errors: (none)
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | pilot state: finished 
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | transexitcode: 0
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | exeerrorcode: 0
[2026-03-25 09:51:11] 2026-03-25 13:50:13,176 | INFO     | exeerrordiag: 
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | exitcode: 0
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | exitmsg: OK
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | cpuconsumptiontime: 100516 s
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | nevents: 400
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | neventsw: 0
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | pid: 2664975
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | pgrp: 2664975
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | corecount: 9
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | event service: False
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | sizes: {0: 2275256, 1: 2280331, 11: 2280331, 58711: 2331596, 58721: 2340594, 58723: 2340678, 58726: 2341000}
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | --------------------------------------------------
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | 
[2026-03-25 09:51:11] 2026-03-25 13:50:13,177 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-03-25 09:51:11] 2026-03-25 13:50:13,440 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,440 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,440 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,440 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,440 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,440 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,441 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 09:51:11] 2026-03-25 13:50:13,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,442 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 09:51:11] 2026-03-25 13:50:13,442 | INFO     | job 7056897373 has completed (purged errors)
[2026-03-25 09:51:11] 2026-03-25 13:50:13,442 | INFO     | overall cleanup function is called
[2026-03-25 09:51:11] 2026-03-25 13:50:14,447 | INFO     | number of running child processes to parent process 2664975: 1
[2026-03-25 09:51:11] 2026-03-25 13:50:14,448 | INFO     | maximum number of monitored processes: 6
[2026-03-25 09:51:11] 2026-03-25 13:50:14,448 | INFO     | aborting job monitoring since job object (job id=7056897373) has expired
[2026-03-25 09:51:11] 2026-03-25 13:50:14,464 | INFO     | --- collectZombieJob: --- 10, [2664975]
[2026-03-25 09:51:11] 2026-03-25 13:50:14,464 | INFO     | zombie collector waiting for pid 2664975
[2026-03-25 09:51:11] 2026-03-25 13:50:14,464 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 09:51:11] 2026-03-25 13:50:14,464 | INFO     | collected zombie processes
[2026-03-25 09:51:11] 2026-03-25 13:50:14,464 | INFO     | will attempt to kill all subprocesses of pid=2664975
[2026-03-25 09:51:11] 2026-03-25 13:50:14,813 | INFO     | PID=2654927 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-25 09:51:11] 2026-03-25 13:50:14,813 | INFO     | .. there are 28 such processes running
[2026-03-25 09:51:11] 2026-03-25 13:50:15,581 | INFO     | process IDs to be killed: [2664975] (in reverse order)
[2026-03-25 09:51:11] 2026-03-25 13:50:15,922 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 09:51:11] 2026-03-25 13:50:15,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 09:51:11] 2026-03-25 13:50:15,953 | INFO     | did not find any defunct processes belonging to 2664975
[2026-03-25 09:51:11] 2026-03-25 13:50:15,977 | INFO     | did not find any defunct processes belonging to 2664975
[2026-03-25 09:51:11] 2026-03-25 13:50:15,978 | INFO     | ready for new job
[2026-03-25 09:51:11] 2026-03-25 13:50:15,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 09:51:11] 2026-03-25 13:50:15,982 | INFO     | **************************************
[2026-03-25 09:51:11] 2026-03-25 13:50:15,983 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 09:51:11] 2026-03-25 13:50:15,983 | INFO     | **************************************
[2026-03-25 09:51:11] 2026-03-25 13:50:15,983 | INFO     | 
[2026-03-25 09:51:11] 2026-03-25 13:50:15,988 | INFO     | architecture information:
[2026-03-25 09:51:11] 2026-03-25 13:50:15,993 | INFO     | executing command: cat /etc/os-release
[2026-03-25 09:51:11] 2026-03-25 13:50:16,076 | INFO     | cat /etc/os-release:
[2026-03-25 09:51:11] NAME="CentOS Linux"
[2026-03-25 09:51:11] VERSION="7 (Core)"
[2026-03-25 09:51:11] ID="centos"
[2026-03-25 09:51:11] ID_LIKE="rhel fedora"
[2026-03-25 09:51:11] VERSION_ID="7"
[2026-03-25 09:51:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 09:51:11] ANSI_COLOR="0;31"
[2026-03-25 09:51:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 09:51:11] HOME_URL="https://www.centos.org/"
[2026-03-25 09:51:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 09:51:11] 
[2026-03-25 09:51:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 09:51:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 09:51:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 09:51:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 09:51:11] 
[2026-03-25 09:51:11] 2026-03-25 13:50:16,076 | INFO     | **************************************
[2026-03-25 09:51:11] 2026-03-25 13:50:16,580 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-03-25 09:51:11] 2026-03-25 13:50:16,638 | INFO     | sufficient remaining disk space (123384889344 B)
[2026-03-25 09:51:11] 2026-03-25 13:50:16,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 09:51:11] 2026-03-25 13:50:16,638 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 09:51:11] 2026-03-25 13:50:16,639 | INFO     | update_server=False
[2026-03-25 09:51:11] 2026-03-25 13:50:16,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 09:51:11] 2026-03-25 13:50:16,797 | INFO     | all payload control threads have been joined
[2026-03-25 09:51:11] 2026-03-25 13:50:16,869 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 09:51:11] 2026-03-25 13:50:16,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 09:51:11] 2026-03-25 13:50:16,953 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-25 09:51:11] 2026-03-25 13:50:16,953 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-25 09:51:11] 2026-03-25 13:50:16,953 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 09:51:11] 2026-03-25 13:50:16,953 | INFO     | will abort loop
[2026-03-25 09:51:11] 2026-03-25 13:50:17,293 | INFO     | all data control threads have been joined
[2026-03-25 09:51:11] 2026-03-25 13:50:17,506 | INFO     | all job control threads have been joined
[2026-03-25 09:51:11] 2026-03-25 13:50:17,645 | INFO     | [job] retrieve thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:17,778 | INFO     | [payload] validate_post thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:17,803 | INFO     | [payload] control thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:17,874 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:17,959 | INFO     | [job] job monitor thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:18,131 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:18,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 09:51:11] 2026-03-25 13:50:18,312 | INFO     | [data] control thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:18,458 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:18,512 | INFO     | [job] control thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:18,735 | INFO     | [payload] failed_post thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:18,901 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:18,941 | INFO     | [data] copytool_out thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:19,074 | INFO     | [job] validate thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:19,078 | INFO     | [data] copytool_in thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:19,236 | INFO     | [job] queue monitor thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:20,878 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 09:51:11] 2026-03-25 13:50:51,458 | INFO     | PID=2654927 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-25 09:51:11] 2026-03-25 13:50:51,458 | INFO     | .. there are 28 such processes running
[2026-03-25 09:51:11] 2026-03-25 13:50:51,470 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 09:51:11] 2026-03-25 13:50:51,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 09:51:11] 2026-03-25 13:50:51,470 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 09:51:11] 2026-03-25 13:51:01,776 | INFO     | [monitor] cgroup control has ended
[2026-03-25 09:51:11] 2026-03-25 13:51:01,923 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140549555799872)>', '<ExcThread(monitor, started 140549197633280)>']
[2026-03-25 09:51:11] 2026-03-25 13:51:02,555 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 09:51:11] 2026-03-25 13:51:02,555 | INFO     | [monitor] control thread has ended
[2026-03-25 09:51:11] 2026-03-25 13:51:06,949 | INFO     | all workflow threads have been joined
[2026-03-25 09:51:11] 2026-03-25 13:51:06,949 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 09:51:11] 2026-03-25 13:51:06,949 | INFO     | traces error code: 0
[2026-03-25 09:51:11] 2026-03-25 13:51:06,949 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 09:51:11] 2026-03-25 13:51:07,983 [wrapper] ==== pilot stdout END ====
[2026-03-25 09:51:11] 2026-03-25 13:51:08,027 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 09:51:11] 2026-03-25 13:51:08,053 [wrapper] pilotpid: 2654927
[2026-03-25 09:51:11] 2026-03-25 13:51:08,087 [wrapper] Pilot exit status: 0
[2026-03-25 09:51:11] 2026-03-25 13:51:08,189 [wrapper] pandaids: 7056897373 7056897373
[2026-03-25 09:51:11] 2026-03-25 13:51:10,732 [wrapper] cleanup supervisor_pilot 1002661 2654928
[2026-03-25 09:51:11] 2026-03-25 13:51:10,749 [wrapper] Test setup, not cleaning
[2026-03-25 09:51:11] 2026-03-25 13:51:10,757 [wrapper] apfmon messages muted
[2026-03-25 09:51:11] 2026-03-25 13:51:10,787 [wrapper] ==== wrapper stdout END ====
[2026-03-25 09:51:11] 2026-03-25 13:51:10,800 [wrapper] ==== wrapper stderr END ====
[2026-03-25 09:51:11]  *** Error codes and diagnostics ***
[2026-03-25 09:51:11]     "exeErrorCode": 0,
[2026-03-25 09:51:11]     "exeErrorDiag": "",
[2026-03-25 09:51:11]     "pilotErrorCode": 0,
[2026-03-25 09:51:11]     "pilotErrorDiag": "",
[2026-03-25 09:51:11]  *** Listing of results directory ***
[2026-03-25 09:51:11] total 730932
[2026-03-25 09:51:11] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas    585013 Mar 16 08:24 pilot3.tar.gz
[2026-03-25 09:51:11] -rwx------. 1 boincer umatlas     36322 Mar 16 09:06 runpilot2-wrapper.sh
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas      5111 Mar 16 09:08 queuedata.json
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas       100 Mar 24 11:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 09:51:11] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 24 11:53 run_atlas
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas       105 Mar 24 11:53 job.xml
[2026-03-25 09:51:11] -rw-r--r--. 3 boincer umatlas 242051041 Mar 24 11:53 EVNT.49133987._000006.pool.root.1
[2026-03-25 09:51:11] -rw-r--r--. 3 boincer umatlas 242051041 Mar 24 11:53 ATLAS.root_0
[2026-03-25 09:51:11] -rw-r--r--. 2 boincer umatlas     15845 Mar 24 11:53 start_atlas.sh
[2026-03-25 09:51:11] drwxrwx--x. 2 boincer umatlas      4096 Mar 24 11:53 shared
[2026-03-25 09:51:11] -rw-r--r--. 2 boincer umatlas    597545 Mar 24 11:53 input.tar.gz
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas         0 Mar 24 11:53 boinc_lockfile
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas      2614 Mar 24 17:31 pandaJob.out
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas        57 Mar 24 17:31 setup.sh.local
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas   1010852 Mar 24 17:31 agis_schedconf.cvmfs.json
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas       444 Mar 24 17:31 workernode_map.json
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas 244809271 Mar 25 09:47 HITS.49176441._000130.pool.root.1
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas       531 Mar 25 09:47 boinc_task_state.xml
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas      6861 Mar 25 09:49 init_data.xml
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas      1045 Mar 25 09:49 memory_monitor_summary.json
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas   1511579 Mar 25 09:50 agis_ddmendpoints.agis.ALL.json
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas    985035 Mar 25 09:50 log.49176441._000130.job.log.tgz.1
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas      6395 Mar 25 09:50 heartbeat.json
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas        96 Mar 25 09:50 pilot_heartbeat.json
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas        29 Mar 25 09:51 wrapper_checkpoint.txt
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas      5007 Mar 25 09:51 pilotlog.txt
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas   6820123 Mar 25 09:51 log.49176441._000130.job.log.1
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas       357 Mar 25 09:51 output.list
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas       620 Mar 25 09:51 runtime_log
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas   7823360 Mar 25 09:51 result.tar.gz
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas      8192 Mar 25 09:51 boinc_mmap_file
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas      9437 Mar 25 09:51 runtime_log.err
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas       786 Mar 25 09:51 mKqNDmIpMM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmu9sLDmwagSOn.diag
[2026-03-25 09:51:11] -rw-r--r--. 1 boincer umatlas     23522 Mar 25 09:51 stderr.txt
[2026-03-25 09:51:11] HITS file was successfully produced:
[2026-03-25 09:51:11] -rw-------. 1 boincer umatlas 244809271 Mar 25 09:47 shared/HITS.pool.root.1
[2026-03-25 09:51:32]  *** Contents of shared directory: ***
[2026-03-25 09:51:32] total 483700
[2026-03-25 09:51:32] -rw-r--r--. 3 boincer umatlas 242051041 Mar 24 11:53 ATLAS.root_0
[2026-03-25 09:51:32] -rw-r--r--. 2 boincer umatlas     15845 Mar 24 11:53 start_atlas.sh
[2026-03-25 09:51:32] -rw-r--r--. 2 boincer umatlas    597545 Mar 24 11:53 input.tar.gz
[2026-03-25 09:51:32] -rw-------. 1 boincer umatlas 244809271 Mar 25 09:47 HITS.pool.root.1
[2026-03-25 09:51:32] -rw-------. 1 boincer umatlas   7823360 Mar 25 09:51 result.tar.gz
09:51:34 (2640098): run_atlas exited; CPU time 103264.146987
09:51:34 (2640098): called boinc_finish(0)

</stderr_txt>
]]>

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