Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:54:58 (3326537): wrapper (7.7.26015): starting
17:54:58 (3326537): wrapper: running run_atlas (--nthreads 3)
[2026-03-25 17:54:58] Arguments: --nthreads 3
[2026-03-25 17:54:58] Threads: 3
[2026-03-25 17:54:58] Checking for CVMFS
[2026-03-25 17:54:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 17:54:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 17:54:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 17:54:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 17:54:59] 2.9.2.0 2975164 4311 68580 157690 1 50 23776128 36864001 0 130560 0 1319096 99.978 151539 18987 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-25 17:54:59] CVMFS is ok
[2026-03-25 17:54:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 17:54:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 17:54:59] Further information can be found at the LHC@home message board.
[2026-03-25 17:54:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 17:54:59] Checking for apptainer binary...
[2026-03-25 17:54:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 17:54:59] Running /usr/bin/apptainer --version
[2026-03-25 17:54:59] apptainer version 1.4.1-1.1
[2026-03-25 17:54:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 17:54:59] thA335
[2026-03-25 17:54:59] apptainer works
[2026-03-25 17:54:59] Set ATHENA_PROC_NUMBER=3
[2026-03-25 17:54:59] Set ATHENA_CORE_NUMBER=3
[2026-03-25 17:54:59] Starting ATLAS job with PandaID=7056899199
[2026-03-25 17:54:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 21:24:41]  *** The last 200 lines of the pilot log: ***
[2026-03-25 21:24:41] 2026-03-25 20:24:08,598 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 21:24:41] 2026-03-25 20:24:08,599 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 21:24:41] 2026-03-25 20:24:08,599 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 21:24:41] 2026-03-25 20:24:08,599 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 21:24:41] 2026-03-25 20:24:08,599 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 21:24:41] 2026-03-25 20:24:08,599 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 21:24:41] 2026-03-25 20:24:08,600 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 21:24:41] 2026-03-25 20:24:08,600 | INFO     | job 7056899199 has completed (purged errors)
[2026-03-25 21:24:41] 2026-03-25 20:24:08,600 | INFO     | overall cleanup function is called
[2026-03-25 21:24:41] 2026-03-25 20:24:09,607 | INFO     | --- collectZombieJob: --- 10, [3335019]
[2026-03-25 21:24:41] 2026-03-25 20:24:09,608 | INFO     | zombie collector waiting for pid 3335019
[2026-03-25 21:24:41] 2026-03-25 20:24:09,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 21:24:41] 2026-03-25 20:24:09,609 | INFO     | collected zombie processes
[2026-03-25 21:24:41] 2026-03-25 20:24:09,610 | INFO     | will attempt to kill all subprocesses of pid=3335019
[2026-03-25 21:24:41] 2026-03-25 20:24:09,647 | INFO     | process IDs to be killed: [3335019] (in reverse order)
[2026-03-25 21:24:41] 2026-03-25 20:24:09,672 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 21:24:41] 2026-03-25 20:24:09,672 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 21:24:41] 2026-03-25 20:24:09,673 | INFO     | did not find any defunct processes belonging to 3335019
[2026-03-25 21:24:41] 2026-03-25 20:24:09,674 | INFO     | did not find any defunct processes belonging to 3335019
[2026-03-25 21:24:41] 2026-03-25 20:24:09,674 | INFO     | ready for new job
[2026-03-25 21:24:41] 2026-03-25 20:24:09,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 21:24:41] 2026-03-25 20:24:09,675 | INFO     | **************************************
[2026-03-25 21:24:41] 2026-03-25 20:24:09,675 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 21:24:41] 2026-03-25 20:24:09,675 | INFO     | **************************************
[2026-03-25 21:24:41] 2026-03-25 20:24:09,675 | INFO     | 
[2026-03-25 21:24:41] 2026-03-25 20:24:09,675 | INFO     | architecture information:
[2026-03-25 21:24:41] 2026-03-25 20:24:09,676 | INFO     | executing command: cat /etc/os-release
[2026-03-25 21:24:41] 2026-03-25 20:24:09,686 | INFO     | cat /etc/os-release:
[2026-03-25 21:24:41] NAME="CentOS Linux"
[2026-03-25 21:24:41] VERSION="7 (Core)"
[2026-03-25 21:24:41] ID="centos"
[2026-03-25 21:24:41] ID_LIKE="rhel fedora"
[2026-03-25 21:24:41] VERSION_ID="7"
[2026-03-25 21:24:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 21:24:41] ANSI_COLOR="0;31"
[2026-03-25 21:24:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 21:24:41] HOME_URL="https://www.centos.org/"
[2026-03-25 21:24:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 21:24:41] 
[2026-03-25 21:24:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 21:24:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 21:24:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 21:24:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 21:24:41] 
[2026-03-25 21:24:41] 2026-03-25 20:24:09,687 | INFO     | **************************************
[2026-03-25 21:24:41] 2026-03-25 20:24:10,189 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-25 21:24:41] 2026-03-25 20:24:10,227 | INFO     | sufficient remaining disk space (837489262592 B)
[2026-03-25 21:24:41] 2026-03-25 20:24:10,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 21:24:41] 2026-03-25 20:24:10,228 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 21:24:41] 2026-03-25 20:24:10,228 | INFO     | update_server=False
[2026-03-25 21:24:41] 2026-03-25 20:24:10,229 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 21:24:41] 2026-03-25 20:24:10,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 21:24:41] 2026-03-25 20:24:10,230 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 21:24:41] 2026-03-25 20:24:10,341 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-25 21:24:41] 2026-03-25 20:24:10,341 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-25 21:24:41] 2026-03-25 20:24:10,341 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 21:24:41] 2026-03-25 20:24:10,341 | INFO     | will abort loop
[2026-03-25 21:24:41] 2026-03-25 20:24:10,967 | INFO     | all payload control threads have been joined
[2026-03-25 21:24:41] 2026-03-25 20:24:11,146 | INFO     | all job control threads have been joined
[2026-03-25 21:24:41] 2026-03-25 20:24:11,235 | INFO     | [job] retrieve thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:11,236 | INFO     | [job] queue monitor thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:11,242 | INFO     | all data control threads have been joined
[2026-03-25 21:24:41] 2026-03-25 20:24:11,347 | INFO     | [job] job monitor thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:11,511 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:11,841 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:11,973 | INFO     | [payload] control thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:12,084 | INFO     | [job] validate thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:12,152 | INFO     | [job] control thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:12,236 | INFO     | [data] copytool_out thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:12,248 | INFO     | [data] control thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:12,371 | INFO     | [payload] validate_post thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:12,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 21:24:41] 2026-03-25 20:24:12,571 | INFO     | [data] copytool_in thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:12,610 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:12,743 | INFO     | [payload] failed_post thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:16,382 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:21,243 | INFO     | job.realtimelogging is not enabled
[2026-03-25 21:24:41] 2026-03-25 20:24:22,248 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 21:24:41] 2026-03-25 20:24:34,777 | INFO     | [monitor] cgroup control has ended
[2026-03-25 21:24:41] 2026-03-25 20:24:36,700 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140537429317440)>', '<ExcThread(monitor, started 140536950281984)>']
[2026-03-25 21:24:41] 2026-03-25 20:24:40,204 | INFO     | PID=3330582 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-25 21:24:41] 2026-03-25 20:24:40,205 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 21:24:41] 2026-03-25 20:24:40,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 21:24:41] 2026-03-25 20:24:40,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 21:24:41] 2026-03-25 20:24:40,205 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 21:24:41] 2026-03-25 20:24:40,205 | INFO     | [monitor] control thread has ended
[2026-03-25 21:24:41] 2026-03-25 20:24:41,726 | INFO     | all workflow threads have been joined
[2026-03-25 21:24:41] 2026-03-25 20:24:41,726 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 21:24:41] 2026-03-25 20:24:41,727 | INFO     | traces error code: 0
[2026-03-25 21:24:41] 2026-03-25 20:24:41,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 21:24:41] 2026-03-25 20:24:41,773 [wrapper] ==== pilot stdout END ====
[2026-03-25 21:24:41] 2026-03-25 20:24:41,777 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 21:24:41] 2026-03-25 20:24:41,780 [wrapper] pilotpid: 3330582
[2026-03-25 21:24:41] 2026-03-25 20:24:41,783 [wrapper] Pilot exit status: 0
[2026-03-25 21:24:41] 2026-03-25 20:24:41,790 [wrapper] pandaids: 7056899199
[2026-03-25 21:24:41] 2026-03-25 20:24:41,806 [wrapper] cleanup supervisor_pilot 3341682 3330583
[2026-03-25 21:24:41] 2026-03-25 20:24:41,809 [wrapper] Test setup, not cleaning
[2026-03-25 21:24:41] 2026-03-25 20:24:41,812 [wrapper] apfmon messages muted
[2026-03-25 21:24:41] 2026-03-25 20:24:41,815 [wrapper] ==== wrapper stdout END ====
[2026-03-25 21:24:41] 2026-03-25 20:24:41,818 [wrapper] ==== wrapper stderr END ====
[2026-03-25 21:24:41]  *** Error codes and diagnostics ***
[2026-03-25 21:24:41]     "exeErrorCode": 0,
[2026-03-25 21:24:41]     "exeErrorDiag": "",
[2026-03-25 21:24:41]     "pilotErrorCode": 0,
[2026-03-25 21:24:41]     "pilotErrorDiag": "",
[2026-03-25 21:24:41]  *** Listing of results directory ***
[2026-03-25 21:24:41] total 478492
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc    585013 Mar 16 13:24 pilot3.tar.gz
[2026-03-25 21:24:41] -rwx------ 1 boinc boinc     36322 Mar 16 14:08 runpilot2-wrapper.sh
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc      5111 Mar 16 14:10 queuedata.json
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc       100 Mar 25 17:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 21:24:41] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 17:54 run_atlas
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc       105 Mar 25 17:54 job.xml
[2026-03-25 21:24:41] -rw-r--r-- 2 boinc boinc 244019218 Mar 25 17:54 EVNT.49134174._000008.pool.root.1
[2026-03-25 21:24:41] -rw-r--r-- 2 boinc boinc    597542 Mar 25 17:54 input.tar.gz
[2026-03-25 21:24:41] -rw-r--r-- 2 boinc boinc     15845 Mar 25 17:54 start_atlas.sh
[2026-03-25 21:24:41] drwxrwx--x 2 boinc boinc      4096 Mar 25 17:54 shared
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc         0 Mar 25 17:54 boinc_setup_complete
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc      6195 Mar 25 17:54 init_data.xml
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc         0 Mar 25 17:54 boinc_lockfile
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc      2597 Mar 25 17:54 pandaJob.out
[2026-03-25 21:24:41] -rw------- 1 boinc boinc   1011933 Mar 25 17:55 agis_schedconf.cvmfs.json
[2026-03-25 21:24:41] -rw------- 1 boinc boinc       416 Mar 25 17:55 workernode_map.json
[2026-03-25 21:24:41] drwx------ 5 boinc boinc      4096 Mar 25 17:55 pilot3
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc       531 Mar 25 21:23 boinc_task_state.xml
[2026-03-25 21:24:41] -rw------- 1 boinc boinc 237762382 Mar 25 21:23 HITS.49176497._000190.pool.root.1
[2026-03-25 21:24:41] -rw------- 1 boinc boinc      1017 Mar 25 21:24 memory_monitor_summary.json
[2026-03-25 21:24:41] -rw------- 1 boinc boinc   1511579 Mar 25 21:24 agis_ddmendpoints.agis.ALL.json
[2026-03-25 21:24:41] -rw------- 1 boinc boinc    364480 Mar 25 21:24 log.49176497._000190.job.log.tgz.1
[2026-03-25 21:24:41] -rw------- 1 boinc boinc      6286 Mar 25 21:24 heartbeat.json
[2026-03-25 21:24:41] -rw------- 1 boinc boinc        95 Mar 25 21:24 pilot_heartbeat.json
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc        28 Mar 25 21:24 wrapper_checkpoint.txt
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc      8192 Mar 25 21:24 boinc_mmap_file
[2026-03-25 21:24:41] -rw------- 1 boinc boinc      5006 Mar 25 21:24 pilotlog.txt
[2026-03-25 21:24:41] -rw------- 1 boinc boinc   1768544 Mar 25 21:24 log.49176497._000190.job.log.1
[2026-03-25 21:24:41] -rw------- 1 boinc boinc       357 Mar 25 21:24 output.list
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc       620 Mar 25 21:24 runtime_log
[2026-03-25 21:24:41] -rw------- 1 boinc boinc   2150400 Mar 25 21:24 result.tar.gz
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc      8897 Mar 25 21:24 runtime_log.err
[2026-03-25 21:24:41] -rw------- 1 boinc boinc       660 Mar 25 21:24 QncLDmqrMM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmoItLDmbnLJ5m.diag
[2026-03-25 21:24:41] -rw-r--r-- 1 boinc boinc     11842 Mar 25 21:24 stderr.txt
[2026-03-25 21:24:41] HITS file was successfully produced:
[2026-03-25 21:24:41] -rw------- 1 boinc boinc 237762382 Mar 25 21:23 shared/HITS.pool.root.1
[2026-03-25 21:24:41]  *** Contents of shared directory: ***
[2026-03-25 21:24:41] total 473200
[2026-03-25 21:24:41] -rw-r--r-- 2 boinc boinc 244019218 Mar 25 17:54 ATLAS.root_0
[2026-03-25 21:24:41] -rw-r--r-- 2 boinc boinc    597542 Mar 25 17:54 input.tar.gz
[2026-03-25 21:24:41] -rw-r--r-- 2 boinc boinc     15845 Mar 25 17:54 start_atlas.sh
[2026-03-25 21:24:41] -rw------- 1 boinc boinc 237762382 Mar 25 21:23 HITS.pool.root.1
[2026-03-25 21:24:41] -rw------- 1 boinc boinc   2150400 Mar 25 21:24 result.tar.gz
21:24:42 (3326537): run_atlas exited; CPU time 36480.016954
21:24:42 (3326537): called boinc_finish(0)

</stderr_txt>
]]>

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