Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:40:39 (593611): wrapper (7.7.26015): starting
12:40:39 (593611): wrapper: running run_atlas (--nthreads 4)
[2026-03-25 12:40:39] Arguments: --nthreads 4
[2026-03-25 12:40:39] Threads: 4
[2026-03-25 12:40:39] Checking for CVMFS
[2026-03-25 12:40:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 12:40:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 12:40:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 12:40:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 12:40:40] 2.9.2.0 159921 4101 94728 157682 0 50 31958464 36864001 0 130560 0 1624142 99.982 140982 13388 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-25 12:40:40] CVMFS is ok
[2026-03-25 12:40:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 12:40:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 12:40:40] Further information can be found at the LHC@home message board.
[2026-03-25 12:40:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 12:40:40] Checking for apptainer binary...
[2026-03-25 12:40:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 12:40:40] Running /usr/bin/apptainer --version
[2026-03-25 12:40:40] apptainer version 1.4.1-1.1
[2026-03-25 12:40:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 12:40:40] atlasA215b
[2026-03-25 12:40:40] apptainer works
[2026-03-25 12:40:40] Set ATHENA_PROC_NUMBER=4
[2026-03-25 12:40:40] Set ATHENA_CORE_NUMBER=4
[2026-03-25 12:40:40] Starting ATLAS job with PandaID=7056900704
[2026-03-25 12:40:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 15:21:12]  *** The last 200 lines of the pilot log: ***
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | job 7056900704 has completed (purged errors)
[2026-03-25 15:21:12] 2026-03-25 14:20:18,453 | INFO     | overall cleanup function is called
[2026-03-25 15:21:12] 2026-03-25 14:20:18,718 | WARNING  | process 602242 can no longer be monitored (due to stat problems) - aborting
[2026-03-25 15:21:12] 2026-03-25 14:20:18,749 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 15:21:12] 2026-03-25 14:20:18,787 | INFO     | number of running child processes to parent process 602242: 1
[2026-03-25 15:21:12] 2026-03-25 14:20:18,787 | INFO     | maximum number of monitored processes: 6
[2026-03-25 15:21:12] 2026-03-25 14:20:18,787 | INFO     | aborting job monitoring since job object (job id=7056900704) has expired
[2026-03-25 15:21:12] 2026-03-25 14:20:19,460 | INFO     | --- collectZombieJob: --- 10, [602242]
[2026-03-25 15:21:12] 2026-03-25 14:20:19,460 | INFO     | zombie collector waiting for pid 602242
[2026-03-25 15:21:12] 2026-03-25 14:20:19,460 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 15:21:12] 2026-03-25 14:20:19,460 | INFO     | collected zombie processes
[2026-03-25 15:21:12] 2026-03-25 14:20:19,460 | INFO     | will attempt to kill all subprocesses of pid=602242
[2026-03-25 15:21:12] 2026-03-25 14:20:19,502 | INFO     | process IDs to be killed: [602242] (in reverse order)
[2026-03-25 15:21:12] 2026-03-25 14:20:19,536 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 15:21:12] 2026-03-25 14:20:19,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 15:21:12] 2026-03-25 14:20:19,537 | INFO     | did not find any defunct processes belonging to 602242
[2026-03-25 15:21:12] 2026-03-25 14:20:19,538 | INFO     | did not find any defunct processes belonging to 602242
[2026-03-25 15:21:12] 2026-03-25 14:20:19,539 | INFO     | ready for new job
[2026-03-25 15:21:12] 2026-03-25 14:20:19,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 15:21:12] 2026-03-25 14:20:19,539 | INFO     | **************************************
[2026-03-25 15:21:12] 2026-03-25 14:20:19,540 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 15:21:12] 2026-03-25 14:20:19,540 | INFO     | **************************************
[2026-03-25 15:21:12] 2026-03-25 14:20:19,540 | INFO     | 
[2026-03-25 15:21:12] 2026-03-25 14:20:19,540 | INFO     | architecture information:
[2026-03-25 15:21:12] 2026-03-25 14:20:19,540 | INFO     | executing command: cat /etc/os-release
[2026-03-25 15:21:12] 2026-03-25 14:20:19,555 | INFO     | cat /etc/os-release:
[2026-03-25 15:21:12] NAME="CentOS Linux"
[2026-03-25 15:21:12] VERSION="7 (Core)"
[2026-03-25 15:21:12] ID="centos"
[2026-03-25 15:21:12] ID_LIKE="rhel fedora"
[2026-03-25 15:21:12] VERSION_ID="7"
[2026-03-25 15:21:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 15:21:12] ANSI_COLOR="0;31"
[2026-03-25 15:21:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 15:21:12] HOME_URL="https://www.centos.org/"
[2026-03-25 15:21:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 15:21:12] 
[2026-03-25 15:21:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 15:21:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 15:21:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 15:21:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 15:21:12] 
[2026-03-25 15:21:12] 2026-03-25 14:20:19,555 | INFO     | **************************************
[2026-03-25 15:21:12] 2026-03-25 14:20:20,058 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-25 15:21:12] 2026-03-25 14:20:20,077 | INFO     | sufficient remaining disk space (327096991744 B)
[2026-03-25 15:21:12] 2026-03-25 14:20:20,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 15:21:12] 2026-03-25 14:20:20,077 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 15:21:12] 2026-03-25 14:20:20,077 | INFO     | update_server=False
[2026-03-25 15:21:12] 2026-03-25 14:20:20,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 15:21:12] 2026-03-25 14:20:20,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 15:21:12] 2026-03-25 14:20:20,078 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 15:21:12] 2026-03-25 14:20:20,078 | INFO     | aborting loop
[2026-03-25 15:21:12] 2026-03-25 14:20:20,407 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 15:21:12] 2026-03-25 14:20:20,436 | INFO     | all data control threads have been joined
[2026-03-25 15:21:12] 2026-03-25 14:20:20,524 | INFO     | all payload control threads have been joined
[2026-03-25 15:21:12] 2026-03-25 14:20:20,927 | INFO     | all job control threads have been joined
[2026-03-25 15:21:12] 2026-03-25 14:20:21,083 | INFO     | [job] retrieve thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:21,083 | INFO     | [job] queue monitor thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:21,084 | INFO     | [job] job monitor thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:21,093 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:21,320 | INFO     | [data] copytool_in thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:21,442 | INFO     | [data] control thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:21,530 | INFO     | [payload] control thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:21,933 | INFO     | [job] control thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:22,090 | INFO     | [payload] failed_post thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:22,093 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:22,224 | INFO     | [job] validate thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:22,411 | INFO     | [data] copytool_out thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:22,483 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:22,541 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:22,614 | INFO     | [payload] validate_post thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:23,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 15:21:12] 2026-03-25 14:20:27,451 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 15:21:12] 2026-03-25 14:20:50,158 | INFO     | PID=597728 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-25 15:21:12] 2026-03-25 14:20:50,158 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 15:21:12] 2026-03-25 14:20:50,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 15:21:12] 2026-03-25 14:20:50,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 15:21:12] 2026-03-25 14:21:06,354 | INFO     | [monitor] cgroup control has ended
[2026-03-25 15:21:12] 2026-03-25 14:21:06,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139813222016832)>', '<ExcThread(monitor, started 139811990009600)>']
[2026-03-25 15:21:12] 2026-03-25 14:21:07,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 15:21:12] 2026-03-25 14:21:07,245 | INFO     | [monitor] control thread has ended
[2026-03-25 15:21:12] 2026-03-25 14:21:11,968 | INFO     | all workflow threads have been joined
[2026-03-25 15:21:12] 2026-03-25 14:21:11,969 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 15:21:12] 2026-03-25 14:21:11,969 | INFO     | traces error code: 0
[2026-03-25 15:21:12] 2026-03-25 14:21:11,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 15:21:12] 2026-03-25 14:21:12,045 [wrapper] ==== pilot stdout END ====
[2026-03-25 15:21:12] 2026-03-25 14:21:12,049 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 15:21:12] 2026-03-25 14:21:12,053 [wrapper] pilotpid: 597728
[2026-03-25 15:21:12] 2026-03-25 14:21:12,058 [wrapper] Pilot exit status: 0
[2026-03-25 15:21:12] 2026-03-25 14:21:12,071 [wrapper] pandaids: 7056900704
[2026-03-25 15:21:12] 2026-03-25 14:21:12,093 [wrapper] cleanup supervisor_pilot  608220 597729
[2026-03-25 15:21:12] 2026-03-25 14:21:12,097 [wrapper] Test setup, not cleaning
[2026-03-25 15:21:12] 2026-03-25 14:21:12,101 [wrapper] apfmon messages muted
[2026-03-25 15:21:12] 2026-03-25 14:21:12,105 [wrapper] ==== wrapper stdout END ====
[2026-03-25 15:21:12] 2026-03-25 14:21:12,109 [wrapper] ==== wrapper stderr END ====
[2026-03-25 15:21:12]  *** Error codes and diagnostics ***
[2026-03-25 15:21:12]     "exeErrorCode": 0,
[2026-03-25 15:21:12]     "exeErrorDiag": "",
[2026-03-25 15:21:12]     "pilotErrorCode": 0,
[2026-03-25 15:21:12]     "pilotErrorDiag": "",
[2026-03-25 15:21:12]  *** Listing of results directory ***
[2026-03-25 15:21:12] total 472584
[2026-03-25 15:21:12] -rwx------ 1 boinc boinc     36322 Mar 16 14:16 runpilot2-wrapper.sh
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc      5111 Mar 16 14:25 queuedata.json
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc       100 Mar 25 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 15:21:12] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 12:40 run_atlas
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc       105 Mar 25 12:40 job.xml
[2026-03-25 15:21:12] -rw-r--r-- 2 boinc boinc 238869203 Mar 25 12:40 EVNT.49134354._000019.pool.root.1
[2026-03-25 15:21:12] drwxrwx--x 2 boinc boinc      4096 Mar 25 12:40 shared
[2026-03-25 15:21:12] -rw-r--r-- 2 boinc boinc    597545 Mar 25 12:40 input.tar.gz
[2026-03-25 15:21:12] -rw-r--r-- 2 boinc boinc     15845 Mar 25 12:40 start_atlas.sh
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc         0 Mar 25 12:40 boinc_setup_complete
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc      6372 Mar 25 12:40 init_data.xml
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc         0 Mar 25 12:40 boinc_lockfile
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc      2619 Mar 25 12:40 pandaJob.out
[2026-03-25 15:21:12] -rw------- 1 boinc boinc   1011166 Mar 25 12:40 agis_schedconf.cvmfs.json
[2026-03-25 15:21:12] -rw------- 1 boinc boinc   1511579 Mar 25 12:40 agis_ddmendpoints.agis.ALL.json
[2026-03-25 15:21:12] -rw------- 1 boinc boinc       431 Mar 25 12:40 workernode_map.json
[2026-03-25 15:21:12] drwx------ 5 boinc boinc      4096 Mar 25 12:40 pilot3
[2026-03-25 15:21:12] -rw------- 1 boinc boinc 237743606 Mar 25 15:19 HITS.49176553._000461.pool.root.1
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc       529 Mar 25 15:20 boinc_task_state.xml
[2026-03-25 15:21:12] -rw------- 1 boinc boinc      1021 Mar 25 15:20 memory_monitor_summary.json
[2026-03-25 15:21:12] -rw------- 1 boinc boinc    333276 Mar 25 15:20 log.49176553._000461.job.log.tgz.1
[2026-03-25 15:21:12] -rw------- 1 boinc boinc      6317 Mar 25 15:20 heartbeat.json
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc        27 Mar 25 15:20 wrapper_checkpoint.txt
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc      8192 Mar 25 15:20 boinc_mmap_file
[2026-03-25 15:21:12] -rw------- 1 boinc boinc        95 Mar 25 15:20 pilot_heartbeat.json
[2026-03-25 15:21:12] -rw------- 1 boinc boinc      4747 Mar 25 15:21 pilotlog.txt
[2026-03-25 15:21:12] -rw------- 1 boinc boinc   1358874 Mar 25 15:21 log.49176553._000461.job.log.1
[2026-03-25 15:21:12] -rw------- 1 boinc boinc       357 Mar 25 15:21 output.list
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc       620 Mar 25 15:21 runtime_log
[2026-03-25 15:21:12] -rw------- 1 boinc boinc   1710080 Mar 25 15:21 result.tar.gz
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc      8916 Mar 25 15:21 runtime_log.err
[2026-03-25 15:21:12] -rw------- 1 boinc boinc       662 Mar 25 15:21 7ePNDmMzMM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmObtLDmDSmoim.diag
[2026-03-25 15:21:12] -rw-r--r-- 1 boinc boinc     12240 Mar 25 15:21 stderr.txt
[2026-03-25 15:21:12] HITS file was successfully produced:
[2026-03-25 15:21:12] -rw------- 1 boinc boinc 237743606 Mar 25 15:19 shared/HITS.pool.root.1
[2026-03-25 15:21:12]  *** Contents of shared directory: ***
[2026-03-25 15:21:12] total 467724
[2026-03-25 15:21:12] -rw-r--r-- 2 boinc boinc 238869203 Mar 25 12:40 ATLAS.root_0
[2026-03-25 15:21:12] -rw-r--r-- 2 boinc boinc    597545 Mar 25 12:40 input.tar.gz
[2026-03-25 15:21:12] -rw-r--r-- 2 boinc boinc     15845 Mar 25 12:40 start_atlas.sh
[2026-03-25 15:21:12] -rw------- 1 boinc boinc 237743606 Mar 25 15:19 HITS.pool.root.1
[2026-03-25 15:21:12] -rw------- 1 boinc boinc   1710080 Mar 25 15:21 result.tar.gz
15:21:13 (593611): run_atlas exited; CPU time 36727.279492
15:21:13 (593611): called boinc_finish(0)

</stderr_txt>
]]>

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