Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:25:04 (91518): wrapper (7.7.26015): starting
03:25:04 (91518): wrapper: running run_atlas (--nthreads 4)
[2026-03-27 03:25:04] Arguments: --nthreads 4
[2026-03-27 03:25:04] Threads: 4
[2026-03-27 03:25:04] Checking for CVMFS
[2026-03-27 03:25:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-27 03:25:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-27 03:25:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-27 03:25:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-27 03:25:05] 2.9.2.0 3102 823 74788 157742 2 49 24453444 36864000 0 130560 0 334184 99.984 31420 11197 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-27 03:25:05] CVMFS is ok
[2026-03-27 03:25:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-27 03:25:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-27 03:25:05] Further information can be found at the LHC@home message board.
[2026-03-27 03:25:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-27 03:25:05] Checking for apptainer binary...
[2026-03-27 03:25:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-27 03:25:05] Running /usr/bin/apptainer --version
[2026-03-27 03:25:05] apptainer version 1.4.1-1.1
[2026-03-27 03:25:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-27 03:25:05] thA305a
[2026-03-27 03:25:05] apptainer works
[2026-03-27 03:25:05] Set ATHENA_PROC_NUMBER=4
[2026-03-27 03:25:05] Set ATHENA_CORE_NUMBER=4
[2026-03-27 03:25:05] Starting ATLAS job with PandaID=7056905078
[2026-03-27 03:25:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-27 03:35:41]  *** The last 200 lines of the pilot log: ***
[2026-03-27 03:35:41] 2026-03-27 02:35:10,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | job 7056905078 has completed (purged errors)
[2026-03-27 03:35:41] 2026-03-27 02:35:10,030 | INFO     | overall cleanup function is called
[2026-03-27 03:35:41] 2026-03-27 02:35:11,037 | INFO     | --- collectZombieJob: --- 10, [100146]
[2026-03-27 03:35:41] 2026-03-27 02:35:11,037 | INFO     | zombie collector waiting for pid 100146
[2026-03-27 03:35:41] 2026-03-27 02:35:11,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-27 03:35:41] 2026-03-27 02:35:11,037 | INFO     | collected zombie processes
[2026-03-27 03:35:41] 2026-03-27 02:35:11,037 | INFO     | will attempt to kill all subprocesses of pid=100146
[2026-03-27 03:35:41] 2026-03-27 02:35:11,082 | INFO     | process IDs to be killed: [100146] (in reverse order)
[2026-03-27 03:35:41] 2026-03-27 02:35:11,119 | WARNING  | found no corresponding commands to process id(s)
[2026-03-27 03:35:41] 2026-03-27 02:35:11,119 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-27 03:35:41] 2026-03-27 02:35:11,121 | INFO     | did not find any defunct processes belonging to 100146
[2026-03-27 03:35:41] 2026-03-27 02:35:11,122 | INFO     | did not find any defunct processes belonging to 100146
[2026-03-27 03:35:41] 2026-03-27 02:35:11,123 | INFO     | ready for new job
[2026-03-27 03:35:41] 2026-03-27 02:35:11,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-27 03:35:41] 2026-03-27 02:35:11,123 | INFO     | **************************************
[2026-03-27 03:35:41] 2026-03-27 02:35:11,123 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-27 03:35:41] 2026-03-27 02:35:11,123 | INFO     | **************************************
[2026-03-27 03:35:41] 2026-03-27 02:35:11,123 | INFO     | 
[2026-03-27 03:35:41] 2026-03-27 02:35:11,124 | INFO     | architecture information:
[2026-03-27 03:35:41] 2026-03-27 02:35:11,124 | INFO     | executing command: cat /etc/os-release
[2026-03-27 03:35:41] 2026-03-27 02:35:11,140 | INFO     | cat /etc/os-release:
[2026-03-27 03:35:41] NAME="CentOS Linux"
[2026-03-27 03:35:41] VERSION="7 (Core)"
[2026-03-27 03:35:41] ID="centos"
[2026-03-27 03:35:41] ID_LIKE="rhel fedora"
[2026-03-27 03:35:41] VERSION_ID="7"
[2026-03-27 03:35:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-27 03:35:41] ANSI_COLOR="0;31"
[2026-03-27 03:35:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-27 03:35:41] HOME_URL="https://www.centos.org/"
[2026-03-27 03:35:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-27 03:35:41] 
[2026-03-27 03:35:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-27 03:35:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-27 03:35:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-27 03:35:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-27 03:35:41] 
[2026-03-27 03:35:41] 2026-03-27 02:35:11,140 | INFO     | **************************************
[2026-03-27 03:35:41] 2026-03-27 02:35:11,643 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-27 03:35:41] 2026-03-27 02:35:11,662 | INFO     | sufficient remaining disk space (336898031616 B)
[2026-03-27 03:35:41] 2026-03-27 02:35:11,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-27 03:35:41] 2026-03-27 02:35:11,662 | INFO     | current server update state: UPDATING_FINAL
[2026-03-27 03:35:41] 2026-03-27 02:35:11,663 | INFO     | update_server=False
[2026-03-27 03:35:41] 2026-03-27 02:35:11,663 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-27 03:35:41] 2026-03-27 02:35:11,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-27 03:35:41] 2026-03-27 02:35:11,663 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-27 03:35:41] 2026-03-27 02:35:11,663 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-27 03:35:41] 2026-03-27 02:35:11,663 | INFO     | aborting loop
[2026-03-27 03:35:41] 2026-03-27 02:35:12,035 | INFO     | all data control threads have been joined
[2026-03-27 03:35:41] 2026-03-27 02:35:12,318 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-27 03:35:41] 2026-03-27 02:35:12,353 | INFO     | all payload control threads have been joined
[2026-03-27 03:35:41] 2026-03-27 02:35:12,668 | INFO     | [job] retrieve thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:12,669 | INFO     | [job] queue monitor thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:12,669 | INFO     | [job] job monitor thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,041 | INFO     | [data] control thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,125 | INFO     | all job control threads have been joined
[2026-03-27 03:35:41] 2026-03-27 02:35:13,162 | INFO     | [payload] failed_post thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,244 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,359 | INFO     | [payload] control thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,595 | INFO     | [job] validate thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,669 | INFO     | [data] copytool_out thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,705 | INFO     | [job] create_data_payload thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,782 | INFO     | [payload] validate_pre thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,917 | INFO     | [data] copytool_in thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:13,942 | INFO     | [payload] execute_payloads thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:14,131 | INFO     | [job] control thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:14,222 | INFO     | [payload] validate_post thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:16,325 | INFO     | [data] queue_monitor thread has finished
[2026-03-27 03:35:41] 2026-03-27 02:35:18,992 | INFO     | [monitor] cgroup control has ended
[2026-03-27 03:35:41] 2026-03-27 02:35:19,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139627086976832)>', '<ExcThread(monitor, started 139626123601664)>']
[2026-03-27 03:35:41] 2026-03-27 02:35:24,341 | INFO     | all workflow threads have been joined
[2026-03-27 03:35:41] 2026-03-27 02:35:24,342 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-27 03:35:41] 2026-03-27 02:35:24,342 | INFO     | traces error code: 0
[2026-03-27 03:35:41] 2026-03-27 02:35:24,342 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-27 03:35:41] 2026-03-27 02:35:41,581 | INFO     | PID=95634 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-27 03:35:41] 2026-03-27 02:35:41,581 | INFO     | found 0 job(s) in 20 queues
[2026-03-27 03:35:41] 2026-03-27 02:35:41,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-27 03:35:41] 2026-03-27 02:35:41,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-27 03:35:41] 2026-03-27 02:35:41,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-27 03:35:41] 2026-03-27 02:35:41,581 | INFO     | [monitor] control thread has ended
[2026-03-27 03:35:41] 2026-03-27 02:35:41,656 [wrapper] ==== pilot stdout END ====
[2026-03-27 03:35:41] 2026-03-27 02:35:41,660 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-27 03:35:41] 2026-03-27 02:35:41,664 [wrapper] pilotpid: 95634
[2026-03-27 03:35:41] 2026-03-27 02:35:41,669 [wrapper] Pilot exit status: 0
[2026-03-27 03:35:41] 2026-03-27 02:35:41,681 [wrapper] pandaids: 7056905078
[2026-03-27 03:35:41] 2026-03-27 02:35:41,703 [wrapper] cleanup supervisor_pilot   95640 95635
[2026-03-27 03:35:41] 2026-03-27 02:35:41,707 [wrapper] Test setup, not cleaning
[2026-03-27 03:35:41] 2026-03-27 02:35:41,711 [wrapper] apfmon messages muted
[2026-03-27 03:35:41] 2026-03-27 02:35:41,716 [wrapper] ==== wrapper stdout END ====
[2026-03-27 03:35:41] 2026-03-27 02:35:41,720 [wrapper] ==== wrapper stderr END ====
[2026-03-27 03:35:41]  *** Error codes and diagnostics ***
[2026-03-27 03:35:41]     "exeErrorCode": 65,
[2026-03-27 03:35:41]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 5837.7 KB/s",
[2026-03-27 03:35:41]     "pilotErrorCode": 1305,
[2026-03-27 03:35:41]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-03-27 03:35:41]  *** Listing of results directory ***
[2026-03-27 03:35:41] total 246984
[2026-03-27 03:35:41] -rwx------ 1 boinc boinc     36322 Mar 16 14:14 runpilot2-wrapper.sh
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc      5111 Mar 16 14:25 queuedata.json
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc       100 Mar 27 03:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-27 03:35:41] -rwxr-xr-x 1 boinc boinc      7986 Mar 27 03:25 run_atlas
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc       105 Mar 27 03:25 job.xml
[2026-03-27 03:35:41] -rw-r--r-- 2 boinc boinc 248461939 Mar 27 03:25 EVNT.49134973._000010.pool.root.1
[2026-03-27 03:35:41] -rw-r--r-- 2 boinc boinc    597538 Mar 27 03:25 input.tar.gz
[2026-03-27 03:35:41] -rw-r--r-- 2 boinc boinc     15845 Mar 27 03:25 start_atlas.sh
[2026-03-27 03:35:41] drwxrwx--x 2 boinc boinc      4096 Mar 27 03:25 shared
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc         0 Mar 27 03:25 boinc_setup_complete
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc      6377 Mar 27 03:25 init_data.xml
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc         0 Mar 27 03:25 boinc_lockfile
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc      2599 Mar 27 03:25 pandaJob.out
[2026-03-27 03:35:41] -rw------- 1 boinc boinc   1012410 Mar 27 03:25 agis_schedconf.cvmfs.json
[2026-03-27 03:35:41] -rw------- 1 boinc boinc   1511579 Mar 27 03:25 agis_ddmendpoints.agis.ALL.json
[2026-03-27 03:35:41] -rw------- 1 boinc boinc       428 Mar 27 03:25 workernode_map.json
[2026-03-27 03:35:41] drwx------ 5 boinc boinc      4096 Mar 27 03:25 pilot3
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc       526 Mar 27 03:32 boinc_task_state.xml
[2026-03-27 03:35:41] -rw------- 1 boinc boinc      1011 Mar 27 03:33 memory_monitor_summary.json
[2026-03-27 03:35:41] -rw------- 1 boinc boinc    123174 Mar 27 03:33 log.49176718._000231.job.log.tgz.1
[2026-03-27 03:35:41] -rw------- 1 boinc boinc      8093 Mar 27 03:35 heartbeat.json
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc      8192 Mar 27 03:35 boinc_mmap_file
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc        24 Mar 27 03:35 wrapper_checkpoint.txt
[2026-03-27 03:35:41] -rw------- 1 boinc boinc       745 Mar 27 03:35 pilotlog.txt
[2026-03-27 03:35:41] -rw------- 1 boinc boinc        95 Mar 27 03:35 pilot_heartbeat.json
[2026-03-27 03:35:41] -rw------- 1 boinc boinc    137839 Mar 27 03:35 log.49176718._000231.job.log.1
[2026-03-27 03:35:41] -rw------- 1 boinc boinc       188 Mar 27 03:35 output.list
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc       620 Mar 27 03:35 runtime_log
[2026-03-27 03:35:41] -rw------- 1 boinc boinc    276480 Mar 27 03:35 result.tar.gz
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc      8748 Mar 27 03:35 runtime_log.err
[2026-03-27 03:35:41] -rw------- 1 boinc boinc       651 Mar 27 03:35 nVANDm6wMM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm0fwLDmLPiUjm.diag
[2026-03-27 03:35:41] -rw-r--r-- 1 boinc boinc     12922 Mar 27 03:35 stderr.txt
[2026-03-27 03:35:41] No HITS result produced
[2026-03-27 03:35:41]  *** Contents of shared directory: ***
[2026-03-27 03:35:41] total 243516
[2026-03-27 03:35:41] -rw-r--r-- 2 boinc boinc 248461939 Mar 27 03:25 ATLAS.root_0
[2026-03-27 03:35:41] -rw-r--r-- 2 boinc boinc    597538 Mar 27 03:25 input.tar.gz
[2026-03-27 03:35:41] -rw-r--r-- 2 boinc boinc     15845 Mar 27 03:25 start_atlas.sh
[2026-03-27 03:35:41] -rw------- 1 boinc boinc    276480 Mar 27 03:35 result.tar.gz
03:35:43 (91518): run_atlas exited; CPU time 227.216004
03:35:43 (91518): called boinc_finish(0)

</stderr_txt>
]]>

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