Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
08:16:31 (107840): wrapper (7.7.26015): starting
08:16:31 (107840): wrapper: running run_atlas (--nthreads 4)
[2026-03-25 08:16:31] Arguments: --nthreads 4
[2026-03-25 08:16:31] Threads: 4
[2026-03-25 08:16:31] Checking for CVMFS
[2026-03-25 08:16:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 08:16:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 08:16:32] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 08:16:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 08:16:32] 2.13.2.0 3487 13 55092 157672 2 186 2734145 4096000 7500 130560 0 467127 99.996 2883 747 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-25 08:16:32] CVMFS is ok
[2026-03-25 08:16:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 08:16:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 08:16:32] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-25 08:16:32] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-25 08:16:32] Further information can be found at the LHC@home message board.
[2026-03-25 08:16:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 08:16:32] Checking for apptainer binary...
[2026-03-25 08:16:32] apptainer is not installed, using version from CVMFS
[2026-03-25 08:16:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 08:16:32] ng-jupiter
[2026-03-25 08:16:32] apptainer works
[2026-03-25 08:16:32] Set ATHENA_PROC_NUMBER=4
[2026-03-25 08:16:32] Set ATHENA_CORE_NUMBER=4
[2026-03-25 08:16:32] Starting ATLAS job with PandaID=7056898880
[2026-03-25 08:16:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 11:25:13]  *** The last 200 lines of the pilot log: ***
[2026-03-25 11:25:13] 2026-03-25 09:24:35,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-25 11:25:13] 2026-03-25 09:24:35,510 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-25 11:25:13] 2026-03-25 09:24:37,078 | INFO     | job 7056898880 has state=finished
[2026-03-25 11:25:13] 2026-03-25 09:24:37,078 | INFO     | preparing for final server update for job 7056898880 in state='finished'
[2026-03-25 11:25:13] 2026-03-25 09:24:37,079 | INFO     | reading metadata from: /var/lib/boinc-client/slots/2/PanDA_Pilot-7056898880/jobReport.json
[2026-03-25 11:25:13] 2026-03-25 09:24:37,082 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/2/workernode_map.json
[2026-03-25 11:25:13] 2026-03-25 09:24:37,082 | INFO     | this job has now completed (state=finished)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,083 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,083 | INFO     | log transfer has been attempted: DONE
[2026-03-25 11:25:13] 2026-03-25 09:24:37,083 | INFO     | job 7056898880 has finished - writing final server update
[2026-03-25 11:25:13] 2026-03-25 09:24:37,083 | INFO     | total number of processed events: 400 (read)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,099 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-7056898880/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,100 | INFO     | extracted standard info from prmon json
[2026-03-25 11:25:13] 2026-03-25 09:24:37,100 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 11:25:13] 2026-03-25 09:24:37,100 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 11:25:13] 2026-03-25 09:24:37,101 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 11:25:13] 2026-03-25 09:24:37,101 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 11:25:13] 2026-03-25 09:24:37,105 | INFO     | fitting pss+swap vs Time
[2026-03-25 11:25:13] 2026-03-25 09:24:37,105 | INFO     | sum of square deviations: 1963274020.0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,107 | INFO     | sum of deviations: -12849146566.999992
[2026-03-25 11:25:13] 2026-03-25 09:24:37,107 | INFO     | mean x: 1774425050.0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,107 | INFO     | mean y: 1673148.491891892
[2026-03-25 11:25:13] 2026-03-25 09:24:37,107 | INFO     | intersect: 11614849560.619165
[2026-03-25 11:25:13] 2026-03-25 09:24:37,108 | INFO     | chi2: 2.832002186233906
[2026-03-25 11:25:13] 2026-03-25 09:24:37,108 | INFO     | sum of square deviations: 1808350185.0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,110 | INFO     | sum of deviations: -4243504375.499996
[2026-03-25 11:25:13] 2026-03-25 09:24:37,110 | INFO     | mean x: 1774424897.5
[2026-03-25 11:25:13] 2026-03-25 09:24:37,110 | INFO     | mean y: 1681462.3166666667
[2026-03-25 11:25:13] 2026-03-25 09:24:37,110 | INFO     | intersect: 4165576198.521968
[2026-03-25 11:25:13] 2026-03-25 09:24:37,110 | INFO     | chi2: 2.254813028874168
[2026-03-25 11:25:13] 2026-03-25 09:24:37,111 | INFO     | current chi2=2.254813028874168 (change=20.380957337017605 %)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,111 | INFO     | right removable region: 179
[2026-03-25 11:25:13] 2026-03-25 09:24:37,111 | INFO     | sum of square deviations: 1808350185.0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,112 | INFO     | sum of deviations: -30494348197.500004
[2026-03-25 11:25:13] 2026-03-25 09:24:37,113 | INFO     | mean x: 1774425202.5
[2026-03-25 11:25:13] 2026-03-25 09:24:37,113 | INFO     | mean y: 1690279.5055555555
[2026-03-25 11:25:13] 2026-03-25 09:24:37,113 | INFO     | intersect: 29923958888.920082
[2026-03-25 11:25:13] 2026-03-25 09:24:37,113 | INFO     | chi2: 1.3957338614087484
[2026-03-25 11:25:13] 2026-03-25 09:24:37,113 | INFO     | current chi2=1.3957338614087484 (change=50.715650284689815 %)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,114 | INFO     | sum of square deviations: 1661798600.0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,115 | INFO     | sum of deviations: -24479106691.0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,115 | INFO     | mean x: 1774425355.0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,115 | INFO     | mean y: 1683987.7942857144
[2026-03-25 11:25:13] 2026-03-25 09:24:37,115 | INFO     | intersect: 26139837901.42771
[2026-03-25 11:25:13] 2026-03-25 09:24:37,116 | INFO     | chi2: 1.355374179453238
[2026-03-25 11:25:13] 2026-03-25 09:24:37,116 | INFO     | current chi2=1.355374179453238 (change=2.8916459700113974 %)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,116 | INFO     | left removable region: 20
[2026-03-25 11:25:13] 2026-03-25 09:24:37,116 | INFO     | sum of square deviations: 1246386160.0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,117 | INFO     | sum of deviations: 206074592.00000066
[2026-03-25 11:25:13] 2026-03-25 09:24:37,118 | INFO     | mean x: 1774425477.0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,118 | INFO     | mean y: 1675842.8742138364
[2026-03-25 11:25:13] 2026-03-25 09:24:37,118 | INFO     | intersect: -291703543.0194658
[2026-03-25 11:25:13] 2026-03-25 09:24:37,118 | INFO     | chi2: 0.4922220102465996
[2026-03-25 11:25:13] 2026-03-25 09:24:37,118 | INFO     | current memory leak: 0.17 B/s (using 159 data points, chi2=0.49)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,119 | INFO     | could have reported an average CPU frequency of 2486 MHz (10 samples)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,119 | INFO     | ..............................
[2026-03-25 11:25:13] 2026-03-25 09:24:37,119 | INFO     | . Timing measurements:
[2026-03-25 11:25:13] 2026-03-25 09:24:37,119 | INFO     | . get job = 0 s
[2026-03-25 11:25:13] 2026-03-25 09:24:37,119 | INFO     | . initial setup = 6 s
[2026-03-25 11:25:13] 2026-03-25 09:24:37,120 | INFO     | . payload setup = 10 s
[2026-03-25 11:25:13] 2026-03-25 09:24:37,120 | INFO     | . stage-in = 0 s
[2026-03-25 11:25:13] 2026-03-25 09:24:37,120 | INFO     | . payload execution = 11235 s
[2026-03-25 11:25:13] 2026-03-25 09:24:37,120 | INFO     | . stage-out = 1 s
[2026-03-25 11:25:13] 2026-03-25 09:24:37,120 | INFO     | . log creation = 0 s
[2026-03-25 11:25:13] 2026-03-25 09:24:37,120 | INFO     | ..............................
[2026-03-25 11:25:13] 2026-03-25 09:24:37,194 | INFO     | 
[2026-03-25 11:25:13] 2026-03-25 09:24:37,195 | INFO     | job summary report
[2026-03-25 11:25:13] 2026-03-25 09:24:37,195 | INFO     | --------------------------------------------------
[2026-03-25 11:25:13] 2026-03-25 09:24:37,195 | INFO     | PanDA job id: 7056898880
[2026-03-25 11:25:13] 2026-03-25 09:24:37,195 | INFO     | task id: 49176431
[2026-03-25 11:25:13] 2026-03-25 09:24:37,195 | INFO     | errors: (none)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,195 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 11:25:13] 2026-03-25 09:24:37,195 | INFO     | pilot state: finished 
[2026-03-25 11:25:13] 2026-03-25 09:24:37,195 | INFO     | transexitcode: 0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,196 | INFO     | exeerrorcode: 0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,196 | INFO     | exeerrordiag: 
[2026-03-25 11:25:13] 2026-03-25 09:24:37,196 | INFO     | exitcode: 0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,196 | INFO     | exitmsg: OK
[2026-03-25 11:25:13] 2026-03-25 09:24:37,196 | INFO     | cpuconsumptiontime: 43713 s
[2026-03-25 11:25:13] 2026-03-25 09:24:37,196 | INFO     | nevents: 400
[2026-03-25 11:25:13] 2026-03-25 09:24:37,196 | INFO     | neventsw: 0
[2026-03-25 11:25:13] 2026-03-25 09:24:37,196 | INFO     | pid: 134285
[2026-03-25 11:25:13] 2026-03-25 09:24:37,196 | INFO     | pgrp: 134285
[2026-03-25 11:25:13] 2026-03-25 09:24:37,197 | INFO     | corecount: 4
[2026-03-25 11:25:13] 2026-03-25 09:24:37,197 | INFO     | event service: False
[2026-03-25 11:25:13] 2026-03-25 09:24:37,197 | INFO     | sizes: {0: 2279949, 1: 2280353, 11: 2280353, 11250: 2309568, 11252: 2318580, 11254: 2318636, 11255: 2318958}
[2026-03-25 11:25:13] 2026-03-25 09:24:37,197 | INFO     | --------------------------------------------------
[2026-03-25 11:25:13] 2026-03-25 09:24:37,197 | INFO     | 
[2026-03-25 11:25:13] 2026-03-25 09:24:37,197 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2026-03-25 11:25:13] 2026-03-25 09:24:37,223 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,224 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,224 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,224 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,224 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,224 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,224 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,227 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,229 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,229 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 11:25:13] 2026-03-25 09:24:37,229 | INFO     | job 7056898880 has completed (purged errors)
[2026-03-25 11:25:13] 2026-03-25 09:24:37,230 | INFO     | overall cleanup function is called
[2026-03-25 11:25:13] 2026-03-25 09:24:38,234 | INFO     | --- collectZombieJob: --- 10, [134285]
[2026-03-25 11:25:13] 2026-03-25 09:24:38,234 | INFO     | zombie collector waiting for pid 134285
[2026-03-25 11:25:13] 2026-03-25 09:24:38,234 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 11:25:13] 2026-03-25 09:24:38,235 | INFO     | collected zombie processes
[2026-03-25 11:25:13] 2026-03-25 09:24:38,235 | INFO     | will attempt to kill all subprocesses of pid=134285
[2026-03-25 11:25:13] 2026-03-25 09:24:38,436 | INFO     | process IDs to be killed: [134285] (in reverse order)
[2026-03-25 11:25:13] 2026-03-25 09:24:38,493 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 11:25:13] 2026-03-25 09:24:38,494 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 11:25:13] 2026-03-25 09:24:38,500 | INFO     | did not find any defunct processes belonging to 134285
[2026-03-25 11:25:13] 2026-03-25 09:24:38,505 | INFO     | did not find any defunct processes belonging to 134285
[2026-03-25 11:25:13] 2026-03-25 09:24:38,506 | INFO     | ready for new job
[2026-03-25 11:25:13] 2026-03-25 09:24:38,506 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 11:25:13] 2026-03-25 09:24:38,509 | INFO     | **************************************
[2026-03-25 11:25:13] 2026-03-25 09:24:38,510 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 11:25:13] 2026-03-25 09:24:38,510 | INFO     | **************************************
[2026-03-25 11:25:13] 2026-03-25 09:24:38,510 | INFO     | 
[2026-03-25 11:25:13] 2026-03-25 09:24:38,515 | INFO     | architecture information:
[2026-03-25 11:25:13] 2026-03-25 09:24:38,515 | INFO     | executing command: cat /etc/os-release
[2026-03-25 11:25:13] 2026-03-25 09:24:38,528 | INFO     | cat /etc/os-release:
[2026-03-25 11:25:13] NAME="CentOS Linux"
[2026-03-25 11:25:13] VERSION="7 (Core)"
[2026-03-25 11:25:13] ID="centos"
[2026-03-25 11:25:13] ID_LIKE="rhel fedora"
[2026-03-25 11:25:13] VERSION_ID="7"
[2026-03-25 11:25:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 11:25:13] ANSI_COLOR="0;31"
[2026-03-25 11:25:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 11:25:13] HOME_URL="https://www.centos.org/"
[2026-03-25 11:25:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 11:25:13] 
[2026-03-25 11:25:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 11:25:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 11:25:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 11:25:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 11:25:13] 
[2026-03-25 11:25:13] 2026-03-25 09:24:38,528 | INFO     | **************************************
[2026-03-25 11:25:13] 2026-03-25 09:24:39,031 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2026-03-25 11:25:13] 2026-03-25 09:24:39,047 | INFO     | sufficient remaining disk space (2955852906496 B)
[2026-03-25 11:25:13] 2026-03-25 09:24:39,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 11:25:13] 2026-03-25 09:24:39,048 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 11:25:13] 2026-03-25 09:24:39,048 | INFO     | update_server=False
[2026-03-25 11:25:13] 2026-03-25 09:24:39,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 11:25:13] 2026-03-25 09:24:39,048 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 11:25:13] 2026-03-25 09:24:39,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 11:25:13] 2026-03-25 09:24:39,049 | INFO     | aborting loop
[2026-03-25 11:25:13] 2026-03-25 09:24:39,112 | INFO     | all data control threads have been joined
[2026-03-25 11:25:13] 2026-03-25 09:24:39,601 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 11:25:13] 2026-03-25 09:24:39,818 | INFO     | all job control threads have been joined
[2026-03-25 11:25:13] 2026-03-25 09:24:40,052 | INFO     | all payload control threads have been joined
[2026-03-25 11:25:13] 2026-03-25 09:24:40,053 | INFO     | [job] queue monitor thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:40,054 | INFO     | [job] retrieve thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:40,054 | INFO     | [job] job monitor thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:40,118 | INFO     | [data] control thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:40,292 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:40,346 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:40,390 | INFO     | [data] copytool_in thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:40,824 | INFO     | [job] control thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:40,941 | INFO     | [payload] validate_post thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:41,015 | INFO     | [payload] failed_post thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:41,057 | INFO     | [payload] control thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:41,080 | INFO     | [job] validate thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:41,238 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:41,277 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:41,607 | INFO     | [data] copytool_out thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:24:41,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 11:25:13] 2026-03-25 09:24:45,618 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 11:25:13] 2026-03-25 09:25:06,480 | INFO     | [monitor] cgroup control has ended
[2026-03-25 11:25:13] 2026-03-25 09:25:07,747 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140549620963136)>', '<ExcThread(monitor, started 140549080200960)>']
[2026-03-25 11:25:13] 2026-03-25 09:25:08,639 | INFO     | PID=119218 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-25 11:25:13] 2026-03-25 09:25:08,639 | INFO     | .. there are 3 such processes running
[2026-03-25 11:25:13] 2026-03-25 09:25:08,639 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 11:25:13] 2026-03-25 09:25:08,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 11:25:13] 2026-03-25 09:25:08,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 11:25:13] 2026-03-25 09:25:08,640 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 11:25:13] 2026-03-25 09:25:08,640 | INFO     | [monitor] control thread has ended
[2026-03-25 11:25:13] 2026-03-25 09:25:12,773 | INFO     | all workflow threads have been joined
[2026-03-25 11:25:13] 2026-03-25 09:25:12,773 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 11:25:13] 2026-03-25 09:25:12,773 | INFO     | traces error code: 0
[2026-03-25 11:25:13] 2026-03-25 09:25:12,774 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 11:25:13] 2026-03-25 09:25:12,882 [wrapper] ==== pilot stdout END ====
[2026-03-25 11:25:13] 2026-03-25 09:25:12,885 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 11:25:13] 2026-03-25 09:25:12,888 [wrapper] pilotpid: 119218
[2026-03-25 11:25:13] 2026-03-25 09:25:12,890 [wrapper] Pilot exit status: 0
[2026-03-25 11:25:13] 2026-03-25 09:25:12,901 [wrapper] pandaids: 7056898880
[2026-03-25 11:25:13] 2026-03-25 09:25:12,933 [wrapper] cleanup supervisor_pilot  159644 119219
[2026-03-25 11:25:13] 2026-03-25 09:25:12,937 [wrapper] Test setup, not cleaning
[2026-03-25 11:25:13] 2026-03-25 09:25:12,939 [wrapper] apfmon messages muted
[2026-03-25 11:25:13] 2026-03-25 09:25:12,941 [wrapper] ==== wrapper stdout END ====
[2026-03-25 11:25:13] 2026-03-25 09:25:12,944 [wrapper] ==== wrapper stderr END ====
[2026-03-25 11:25:13]  *** Error codes and diagnostics ***
[2026-03-25 11:25:13]     "exeErrorCode": 0,
[2026-03-25 11:25:13]     "exeErrorDiag": "",
[2026-03-25 11:25:13]     "pilotErrorCode": 0,
[2026-03-25 11:25:13]     "pilotErrorDiag": "",
[2026-03-25 11:25:13]  *** Listing of results directory ***
[2026-03-25 11:25:13] total 426224
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc    585013 Mar 16 14:24 pilot3.tar.gz
[2026-03-25 11:25:13] -rwx------ 1 boinc boinc     36322 Mar 16 15:08 runpilot2-wrapper.sh
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc      5111 Mar 16 15:10 queuedata.json
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc       100 Mar 25 08:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 11:25:13] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 08:16 run_atlas
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc       105 Mar 25 08:16 job.xml
[2026-03-25 11:25:13] drwxrwx--x 2 boinc boinc      4096 Mar 25 08:16 shared
[2026-03-25 11:25:13] -rw-r--r-- 2 boinc boinc    597542 Mar 25 08:16 input.tar.gz
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc      6602 Mar 25 08:16 init_data.xml
[2026-03-25 11:25:13] -rw-r--r-- 2 boinc boinc 227930447 Mar 25 08:16 EVNT.49133949._000001.pool.root.1
[2026-03-25 11:25:13] -rw-r--r-- 2 boinc boinc     15845 Mar 25 08:16 start_atlas.sh
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc         0 Mar 25 08:16 boinc_lockfile
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc      2626 Mar 25 08:16 pandaJob.out
[2026-03-25 11:25:13] -rw------- 1 boinc boinc   1010836 Mar 25 08:16 agis_schedconf.cvmfs.json
[2026-03-25 11:25:13] -rw------- 1 boinc boinc       433 Mar 25 08:16 workernode_map.json
[2026-03-25 11:25:13] drwx------ 5 boinc boinc      4096 Mar 25 08:16 pilot3
[2026-03-25 11:25:13] -rw------- 1 boinc boinc 200605607 Mar 25 11:24 HITS.49176431._000025.pool.root.1
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc       530 Mar 25 11:24 boinc_task_state.xml
[2026-03-25 11:25:13] -rw------- 1 boinc boinc        95 Mar 25 11:24 pilot_heartbeat.json
[2026-03-25 11:25:13] -rw------- 1 boinc boinc      1026 Mar 25 11:24 memory_monitor_summary.json
[2026-03-25 11:25:13] -rw------- 1 boinc boinc   1511579 Mar 25 11:24 agis_ddmendpoints.agis.ALL.json
[2026-03-25 11:25:13] -rw------- 1 boinc boinc    376816 Mar 25 11:24 log.49176431._000025.job.log.tgz.1
[2026-03-25 11:25:13] -rw------- 1 boinc boinc      6326 Mar 25 11:24 heartbeat.json
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc      8192 Mar 25 11:25 boinc_mmap_file
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc        28 Mar 25 11:25 wrapper_checkpoint.txt
[2026-03-25 11:25:13] -rw------- 1 boinc boinc      4827 Mar 25 11:25 pilotlog.txt
[2026-03-25 11:25:13] -rw------- 1 boinc boinc   1610153 Mar 25 11:25 log.49176431._000025.job.log.1
[2026-03-25 11:25:13] -rw------- 1 boinc boinc       357 Mar 25 11:25 output.list
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc       620 Mar 25 11:25 runtime_log
[2026-03-25 11:25:13] -rw------- 1 boinc boinc   2007040 Mar 25 11:25 result.tar.gz
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc      9141 Mar 25 11:25 runtime_log.err
[2026-03-25 11:25:13] -rw------- 1 boinc boinc       728 Mar 25 11:25 JORMDmbrMM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmzHtLDmw7zLOn.diag
[2026-03-25 11:25:13] -rw-r--r-- 1 boinc boinc     21512 Mar 25 11:25 stderr.txt
[2026-03-25 11:25:13] HITS file was successfully produced:
[2026-03-25 11:25:13] -rw------- 1 boinc boinc 200605607 Mar 25 11:24 shared/HITS.pool.root.1
[2026-03-25 11:25:13]  *** Contents of shared directory: ***
[2026-03-25 11:25:13] total 421064
[2026-03-25 11:25:13] -rw-r--r-- 2 boinc boinc    597542 Mar 25 08:16 input.tar.gz
[2026-03-25 11:25:13] -rw-r--r-- 2 boinc boinc 227930447 Mar 25 08:16 ATLAS.root_0
[2026-03-25 11:25:13] -rw-r--r-- 2 boinc boinc     15845 Mar 25 08:16 start_atlas.sh
[2026-03-25 11:25:13] -rw------- 1 boinc boinc 200605607 Mar 25 11:24 HITS.pool.root.1
[2026-03-25 11:25:13] -rw------- 1 boinc boinc   2007040 Mar 25 11:25 result.tar.gz
11:25:14 (107840): run_atlas exited; CPU time 44011.959306
11:25:14 (107840): called boinc_finish(0)

</stderr_txt>
]]>

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