Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:01:36 (1238580): wrapper (7.7.26015): starting
17:01:36 (1238580): wrapper: running run_atlas (--nthreads 4)
[2026-03-25 17:01:36] Arguments: --nthreads 4
[2026-03-25 17:01:36] Threads: 4
[2026-03-25 17:01:36] Checking for CVMFS
[2026-03-25 17:01:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 17:01:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 17:01:38] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 17:01:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 17:01:38] 2.9.2.0 818988 4251 94984 157688 2 49 29220844 36864000 0 130560 0 1569062 99.981 146610 14650 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-25 17:01:38] CVMFS is ok
[2026-03-25 17:01:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 17:01:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 17:01:38] Further information can be found at the LHC@home message board.
[2026-03-25 17:01:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 17:01:38] Checking for apptainer binary...
[2026-03-25 17:01:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 17:01:38] Running /usr/bin/apptainer --version
[2026-03-25 17:01:38] apptainer version 1.4.1-1.1
[2026-03-25 17:01:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 17:01:38] thA315a
[2026-03-25 17:01:38] apptainer works
[2026-03-25 17:01:38] Set ATHENA_PROC_NUMBER=4
[2026-03-25 17:01:38] Set ATHENA_CORE_NUMBER=4
[2026-03-25 17:01:38] Starting ATLAS job with PandaID=7056898615
[2026-03-25 17:01:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 19:28:07]  *** The last 200 lines of the pilot log: ***
[2026-03-25 19:28:07] 2026-03-25 18:27:14,885 | INFO     | number of running child processes to parent process 1247217: 1
[2026-03-25 19:28:07] 2026-03-25 18:27:14,885 | INFO     | maximum number of monitored processes: 6
[2026-03-25 19:28:07] 2026-03-25 18:27:14,885 | INFO     | aborting job monitoring since job object (job id=7056898615) has expired
[2026-03-25 19:28:07] 2026-03-25 18:27:15,253 | INFO     | --- collectZombieJob: --- 10, [1247217]
[2026-03-25 19:28:07] 2026-03-25 18:27:15,253 | INFO     | zombie collector waiting for pid 1247217
[2026-03-25 19:28:07] 2026-03-25 18:27:15,253 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 19:28:07] 2026-03-25 18:27:15,253 | INFO     | collected zombie processes
[2026-03-25 19:28:07] 2026-03-25 18:27:15,253 | INFO     | will attempt to kill all subprocesses of pid=1247217
[2026-03-25 19:28:07] 2026-03-25 18:27:15,294 | INFO     | process IDs to be killed: [1247217] (in reverse order)
[2026-03-25 19:28:07] 2026-03-25 18:27:15,326 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 19:28:07] 2026-03-25 18:27:15,326 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 19:28:07] 2026-03-25 18:27:15,328 | INFO     | did not find any defunct processes belonging to 1247217
[2026-03-25 19:28:07] 2026-03-25 18:27:15,329 | INFO     | did not find any defunct processes belonging to 1247217
[2026-03-25 19:28:07] 2026-03-25 18:27:15,329 | INFO     | ready for new job
[2026-03-25 19:28:07] 2026-03-25 18:27:15,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 19:28:07] 2026-03-25 18:27:15,330 | INFO     | **************************************
[2026-03-25 19:28:07] 2026-03-25 18:27:15,330 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 19:28:07] 2026-03-25 18:27:15,330 | INFO     | **************************************
[2026-03-25 19:28:07] 2026-03-25 18:27:15,330 | INFO     | 
[2026-03-25 19:28:07] 2026-03-25 18:27:15,330 | INFO     | architecture information:
[2026-03-25 19:28:07] 2026-03-25 18:27:15,330 | INFO     | executing command: cat /etc/os-release
[2026-03-25 19:28:07] 2026-03-25 18:27:15,344 | INFO     | cat /etc/os-release:
[2026-03-25 19:28:07] NAME="CentOS Linux"
[2026-03-25 19:28:07] VERSION="7 (Core)"
[2026-03-25 19:28:07] ID="centos"
[2026-03-25 19:28:07] ID_LIKE="rhel fedora"
[2026-03-25 19:28:07] VERSION_ID="7"
[2026-03-25 19:28:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 19:28:07] ANSI_COLOR="0;31"
[2026-03-25 19:28:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 19:28:07] HOME_URL="https://www.centos.org/"
[2026-03-25 19:28:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 19:28:07] 
[2026-03-25 19:28:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 19:28:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 19:28:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 19:28:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 19:28:07] 
[2026-03-25 19:28:07] 2026-03-25 18:27:15,344 | INFO     | **************************************
[2026-03-25 19:28:07] 2026-03-25 18:27:15,848 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-25 19:28:07] 2026-03-25 18:27:15,865 | INFO     | sufficient remaining disk space (229761875968 B)
[2026-03-25 19:28:07] 2026-03-25 18:27:15,865 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 19:28:07] 2026-03-25 18:27:15,865 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 19:28:07] 2026-03-25 18:27:15,865 | INFO     | update_server=False
[2026-03-25 19:28:07] 2026-03-25 18:27:15,865 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 19:28:07] 2026-03-25 18:27:15,866 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 19:28:07] 2026-03-25 18:27:15,866 | INFO     | will abort loop
[2026-03-25 19:28:07] 2026-03-25 18:27:15,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 19:28:07] 2026-03-25 18:27:15,866 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-25 19:28:07] 2026-03-25 18:27:15,866 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 19:28:07] 2026-03-25 18:27:15,866 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 19:28:07] 2026-03-25 18:27:15,866 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 19:28:07] 2026-03-25 18:27:15,928 | INFO     | all data control threads have been joined
[2026-03-25 19:28:07] 2026-03-25 18:27:16,076 | INFO     | all payload control threads have been joined
[2026-03-25 19:28:07] 2026-03-25 18:27:16,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 19:28:07] 2026-03-25 18:27:16,869 | INFO     | [job] retrieve thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:16,871 | INFO     | [job] queue monitor thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:16,872 | INFO     | [job] job monitor thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:16,934 | INFO     | [data] control thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:17,082 | INFO     | [payload] control thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:17,143 | INFO     | all job control threads have been joined
[2026-03-25 19:28:07] 2026-03-25 18:27:17,374 | INFO     | [payload] failed_post thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:17,826 | INFO     | [job] validate thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:17,854 | INFO     | [payload] validate_post thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:17,904 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:18,012 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:18,140 | INFO     | [data] copytool_in thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:18,149 | INFO     | [job] control thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:18,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 19:28:07] 2026-03-25 18:27:18,328 | INFO     | [data] copytool_out thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:18,351 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:22,173 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:27:26,798 | INFO     | job.realtimelogging is not enabled
[2026-03-25 19:28:07] 2026-03-25 18:27:27,804 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 19:28:07] 2026-03-25 18:28:02,004 | INFO     | [monitor] cgroup control has ended
[2026-03-25 19:28:07] 2026-03-25 18:28:02,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405526468416)>', '<ExcThread(monitor, started 140404754212608)>']
[2026-03-25 19:28:07] 2026-03-25 18:28:03,115 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 19:28:07] 2026-03-25 18:28:03,115 | INFO     | [monitor] control thread has ended
[2026-03-25 19:28:07] 2026-03-25 18:28:07,316 | INFO     | all workflow threads have been joined
[2026-03-25 19:28:07] 2026-03-25 18:28:07,317 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 19:28:07] 2026-03-25 18:28:07,317 | INFO     | traces error code: 0
[2026-03-25 19:28:07] 2026-03-25 18:28:07,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 19:28:07] 2026-03-25 18:28:07,386 [wrapper] ==== pilot stdout END ====
[2026-03-25 19:28:07] 2026-03-25 18:28:07,390 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 19:28:07] 2026-03-25 18:28:07,394 [wrapper] pilotpid: 1242694
[2026-03-25 19:28:07] 2026-03-25 18:28:07,398 [wrapper] Pilot exit status: 0
[2026-03-25 19:28:07] 2026-03-25 18:28:07,409 [wrapper] pandaids: 7056898615
[2026-03-25 19:28:07] 2026-03-25 18:28:07,432 [wrapper] cleanup supervisor_pilot 1253163 1242695
[2026-03-25 19:28:07] 2026-03-25 18:28:07,435 [wrapper] Test setup, not cleaning
[2026-03-25 19:28:07] 2026-03-25 18:28:07,439 [wrapper] apfmon messages muted
[2026-03-25 19:28:07] 2026-03-25 18:28:07,442 [wrapper] ==== wrapper stdout END ====
[2026-03-25 19:28:07] 2026-03-25 18:28:07,446 [wrapper] ==== wrapper stderr END ====
[2026-03-25 19:28:07]  *** Error codes and diagnostics ***
[2026-03-25 19:28:07]     "exeErrorCode": 0,
[2026-03-25 19:28:07]     "exeErrorDiag": "",
[2026-03-25 19:28:07]     "pilotErrorCode": 0,
[2026-03-25 19:28:07]     "pilotErrorDiag": "",
[2026-03-25 19:28:07]  *** Listing of results directory ***
[2026-03-25 19:28:07] total 466016
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc    585013 Mar 16 13:24 pilot3.tar.gz
[2026-03-25 19:28:07] -rwx------ 1 boinc boinc     36322 Mar 16 14:06 runpilot2-wrapper.sh
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc      5111 Mar 16 14:08 queuedata.json
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc       100 Mar 25 17:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 19:28:07] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 17:01 run_atlas
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc       105 Mar 25 17:01 job.xml
[2026-03-25 19:28:07] -rw-r--r-- 2 boinc boinc 241373846 Mar 25 17:01 EVNT.49134050._000005.pool.root.1
[2026-03-25 19:28:07] -rw-r--r-- 2 boinc boinc    597545 Mar 25 17:01 input.tar.gz
[2026-03-25 19:28:07] -rw-r--r-- 2 boinc boinc     15845 Mar 25 17:01 start_atlas.sh
[2026-03-25 19:28:07] drwxrwx--x 2 boinc boinc      4096 Mar 25 17:01 shared
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc         0 Mar 25 17:01 boinc_setup_complete
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc      6370 Mar 25 17:01 init_data.xml
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc         0 Mar 25 17:01 boinc_lockfile
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc      2614 Mar 25 17:01 pandaJob.out
[2026-03-25 19:28:07] -rw------- 1 boinc boinc   1011933 Mar 25 17:01 agis_schedconf.cvmfs.json
[2026-03-25 19:28:07] -rw------- 1 boinc boinc   1511579 Mar 25 17:01 agis_ddmendpoints.agis.ALL.json
[2026-03-25 19:28:07] -rw------- 1 boinc boinc       428 Mar 25 17:01 workernode_map.json
[2026-03-25 19:28:07] drwx------ 5 boinc boinc      4096 Mar 25 17:01 pilot3
[2026-03-25 19:28:07] -rw------- 1 boinc boinc        95 Mar 25 19:26 pilot_heartbeat.json
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc       529 Mar 25 19:26 boinc_task_state.xml
[2026-03-25 19:28:07] -rw------- 1 boinc boinc 228747752 Mar 25 19:26 HITS.49176458._000118.pool.root.1
[2026-03-25 19:28:07] -rw------- 1 boinc boinc      1018 Mar 25 19:27 memory_monitor_summary.json
[2026-03-25 19:28:07] -rw------- 1 boinc boinc    329457 Mar 25 19:27 log.49176458._000118.job.log.tgz.1
[2026-03-25 19:28:07] -rw------- 1 boinc boinc      6305 Mar 25 19:27 heartbeat.json
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc      8192 Mar 25 19:27 boinc_mmap_file
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc        27 Mar 25 19:27 wrapper_checkpoint.txt
[2026-03-25 19:28:07] -rw------- 1 boinc boinc      4626 Mar 25 19:28 pilotlog.txt
[2026-03-25 19:28:07] -rw------- 1 boinc boinc   1244858 Mar 25 19:28 log.49176458._000118.job.log.1
[2026-03-25 19:28:07] -rw------- 1 boinc boinc       357 Mar 25 19:28 output.list
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc       620 Mar 25 19:28 runtime_log
[2026-03-25 19:28:07] -rw------- 1 boinc boinc   1587200 Mar 25 19:28 result.tar.gz
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc      8901 Mar 25 19:28 runtime_log.err
[2026-03-25 19:28:07] -rw------- 1 boinc boinc       659 Mar 25 19:28 TT9KDmQpMM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmRLwLDm4gDkam.diag
[2026-03-25 19:28:07] -rw-r--r-- 1 boinc boinc     10983 Mar 25 19:28 stderr.txt
[2026-03-25 19:28:07] HITS file was successfully produced:
[2026-03-25 19:28:07] -rw------- 1 boinc boinc 228747752 Mar 25 19:26 shared/HITS.pool.root.1
[2026-03-25 19:28:07]  *** Contents of shared directory: ***
[2026-03-25 19:28:07] total 461268
[2026-03-25 19:28:07] -rw-r--r-- 2 boinc boinc 241373846 Mar 25 17:01 ATLAS.root_0
[2026-03-25 19:28:07] -rw-r--r-- 2 boinc boinc    597545 Mar 25 17:01 input.tar.gz
[2026-03-25 19:28:07] -rw-r--r-- 2 boinc boinc     15845 Mar 25 17:01 start_atlas.sh
[2026-03-25 19:28:07] -rw------- 1 boinc boinc 228747752 Mar 25 19:26 HITS.pool.root.1
[2026-03-25 19:28:07] -rw------- 1 boinc boinc   1587200 Mar 25 19:28 result.tar.gz
19:28:08 (1238580): run_atlas exited; CPU time 33363.913308
19:28:08 (1238580): called boinc_finish(0)

</stderr_txt>
]]>

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