Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:45:25 (1067220): wrapper (7.7.26015): starting
16:45:25 (1067220): wrapper: running run_atlas (--nthreads 3)
[2026-03-25 16:45:26] Arguments: --nthreads 3
[2026-03-25 16:45:26] Threads: 3
[2026-03-25 16:45:26] Checking for CVMFS
[2026-03-25 16:45:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 16:45:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 16:45:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 16:45:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 16:45:27] 2.9.2.0 683861 4343 80456 157688 0 50 33222356 36864001 0 130560 0 1356033 99.977 148005 7818 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-25 16:45:27] CVMFS is ok
[2026-03-25 16:45:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 16:45:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 16:45:27] Further information can be found at the LHC@home message board.
[2026-03-25 16:45:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 16:45:27] Checking for apptainer binary...
[2026-03-25 16:45:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 16:45:27] Running /usr/bin/apptainer --version
[2026-03-25 16:45:27] apptainer version 1.4.1-1.1
[2026-03-25 16:45:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 16:45:27] magicA246a
[2026-03-25 16:45:27] apptainer works
[2026-03-25 16:45:27] Set ATHENA_PROC_NUMBER=3
[2026-03-25 16:45:27] Set ATHENA_CORE_NUMBER=3
[2026-03-25 16:45:27] Starting ATLAS job with PandaID=7056896043
[2026-03-25 16:45:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 19:51:03]  *** The last 200 lines of the pilot log: ***
[2026-03-25 19:51:03] 2026-03-25 18:50:31,326 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 19:51:03] 2026-03-25 18:50:31,326 | INFO     | job 7056896043 has completed (purged errors)
[2026-03-25 19:51:03] 2026-03-25 18:50:31,326 | INFO     | overall cleanup function is called
[2026-03-25 19:51:03] 2026-03-25 18:50:32,332 | INFO     | --- collectZombieJob: --- 10, [1075691]
[2026-03-25 19:51:03] 2026-03-25 18:50:32,333 | INFO     | zombie collector waiting for pid 1075691
[2026-03-25 19:51:03] 2026-03-25 18:50:32,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 19:51:03] 2026-03-25 18:50:32,333 | INFO     | collected zombie processes
[2026-03-25 19:51:03] 2026-03-25 18:50:32,333 | INFO     | will attempt to kill all subprocesses of pid=1075691
[2026-03-25 19:51:03] 2026-03-25 18:50:32,378 | INFO     | process IDs to be killed: [1075691] (in reverse order)
[2026-03-25 19:51:03] 2026-03-25 18:50:32,406 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 19:51:03] 2026-03-25 18:50:32,406 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 19:51:03] 2026-03-25 18:50:32,407 | INFO     | did not find any defunct processes belonging to 1075691
[2026-03-25 19:51:03] 2026-03-25 18:50:32,409 | INFO     | did not find any defunct processes belonging to 1075691
[2026-03-25 19:51:03] 2026-03-25 18:50:32,409 | INFO     | ready for new job
[2026-03-25 19:51:03] 2026-03-25 18:50:32,409 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 19:51:03] 2026-03-25 18:50:32,410 | INFO     | **************************************
[2026-03-25 19:51:03] 2026-03-25 18:50:32,410 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 19:51:03] 2026-03-25 18:50:32,410 | INFO     | **************************************
[2026-03-25 19:51:03] 2026-03-25 18:50:32,410 | INFO     | 
[2026-03-25 19:51:03] 2026-03-25 18:50:32,410 | INFO     | architecture information:
[2026-03-25 19:51:03] 2026-03-25 18:50:32,410 | INFO     | executing command: cat /etc/os-release
[2026-03-25 19:51:03] 2026-03-25 18:50:32,420 | INFO     | cat /etc/os-release:
[2026-03-25 19:51:03] NAME="CentOS Linux"
[2026-03-25 19:51:03] VERSION="7 (Core)"
[2026-03-25 19:51:03] ID="centos"
[2026-03-25 19:51:03] ID_LIKE="rhel fedora"
[2026-03-25 19:51:03] VERSION_ID="7"
[2026-03-25 19:51:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 19:51:03] ANSI_COLOR="0;31"
[2026-03-25 19:51:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 19:51:03] HOME_URL="https://www.centos.org/"
[2026-03-25 19:51:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 19:51:03] 
[2026-03-25 19:51:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 19:51:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 19:51:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 19:51:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 19:51:03] 
[2026-03-25 19:51:03] 2026-03-25 18:50:32,420 | INFO     | **************************************
[2026-03-25 19:51:03] 2026-03-25 18:50:32,921 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-25 19:51:03] 2026-03-25 18:50:32,934 | INFO     | sufficient remaining disk space (270834597888 B)
[2026-03-25 19:51:03] 2026-03-25 18:50:32,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 19:51:03] 2026-03-25 18:50:32,934 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 19:51:03] 2026-03-25 18:50:32,934 | INFO     | update_server=False
[2026-03-25 19:51:03] 2026-03-25 18:50:32,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 19:51:03] 2026-03-25 18:50:32,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 19:51:03] 2026-03-25 18:50:32,935 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 19:51:03] 2026-03-25 18:50:32,935 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 19:51:03] 2026-03-25 18:50:33,671 | INFO     | all payload control threads have been joined
[2026-03-25 19:51:03] 2026-03-25 18:50:33,940 | INFO     | [job] retrieve thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:33,940 | INFO     | [job] queue monitor thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:34,020 | INFO     | all data control threads have been joined
[2026-03-25 19:51:03] 2026-03-25 18:50:34,032 | INFO     | all job control threads have been joined
[2026-03-25 19:51:03] 2026-03-25 18:50:34,233 | INFO     | [payload] failed_post thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:34,561 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:34,677 | INFO     | [payload] control thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:34,817 | INFO     | [job] validate thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:34,890 | INFO     | [payload] validate_post thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:34,922 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:34,940 | INFO     | [data] copytool_out thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:34,978 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:35,025 | INFO     | [data] control thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:35,037 | INFO     | [job] control thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:35,091 | INFO     | [data] copytool_in thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:35,466 | WARNING  | process 1075691 can no longer be monitored (due to stat problems) - aborting
[2026-03-25 19:51:03] 2026-03-25 18:50:35,497 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 19:51:03] 2026-03-25 18:50:35,535 | INFO     | number of running child processes to parent process 1075691: 1
[2026-03-25 19:51:03] 2026-03-25 18:50:35,535 | INFO     | maximum number of monitored processes: 6
[2026-03-25 19:51:03] 2026-03-25 18:50:35,536 | INFO     | aborting job monitoring since job object (job id=7056896043) has expired
[2026-03-25 19:51:03] 2026-03-25 18:50:35,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 19:51:03] 2026-03-25 18:50:35,536 | INFO     | will abort loop
[2026-03-25 19:51:03] 2026-03-25 18:50:36,541 | INFO     | [job] job monitor thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:36,941 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:43,576 | INFO     | job.realtimelogging is not enabled
[2026-03-25 19:51:03] 2026-03-25 18:50:44,581 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 19:51:03] 2026-03-25 18:50:53,712 | INFO     | [monitor] cgroup control has ended
[2026-03-25 19:51:03] 2026-03-25 18:50:54,980 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140018794460992)>', '<ExcThread(monitor, started 140018450413312)>']
[2026-03-25 19:51:03] 2026-03-25 18:50:59,998 | INFO     | all workflow threads have been joined
[2026-03-25 19:51:03] 2026-03-25 18:50:59,998 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 19:51:03] 2026-03-25 18:50:59,999 | INFO     | traces error code: 0
[2026-03-25 19:51:03] 2026-03-25 18:50:59,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 19:51:03] 2026-03-25 18:51:03,827 | INFO     | PID=1071265 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-25 19:51:03] 2026-03-25 18:51:03,827 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 19:51:03] 2026-03-25 18:51:03,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 19:51:03] 2026-03-25 18:51:03,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 19:51:03] 2026-03-25 18:51:03,827 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 19:51:03] 2026-03-25 18:51:03,827 | INFO     | [monitor] control thread has ended
[2026-03-25 19:51:03] 2026-03-25 18:51:03,877 [wrapper] ==== pilot stdout END ====
[2026-03-25 19:51:03] 2026-03-25 18:51:03,879 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 19:51:03] 2026-03-25 18:51:03,882 [wrapper] pilotpid: 1071265
[2026-03-25 19:51:03] 2026-03-25 18:51:03,885 [wrapper] Pilot exit status: 0
[2026-03-25 19:51:03] 2026-03-25 18:51:03,892 [wrapper] pandaids: 7056896043
[2026-03-25 19:51:03] 2026-03-25 18:51:03,911 [wrapper] cleanup supervisor_pilot 1083015 1071266
[2026-03-25 19:51:03] 2026-03-25 18:51:03,913 [wrapper] Test setup, not cleaning
[2026-03-25 19:51:03] 2026-03-25 18:51:03,916 [wrapper] apfmon messages muted
[2026-03-25 19:51:03] 2026-03-25 18:51:03,919 [wrapper] ==== wrapper stdout END ====
[2026-03-25 19:51:03] 2026-03-25 18:51:03,921 [wrapper] ==== wrapper stderr END ====
[2026-03-25 19:51:03]  *** Error codes and diagnostics ***
[2026-03-25 19:51:03]     "exeErrorCode": 0,
[2026-03-25 19:51:03]     "exeErrorDiag": "",
[2026-03-25 19:51:03]     "pilotErrorCode": 0,
[2026-03-25 19:51:03]     "pilotErrorDiag": "",
[2026-03-25 19:51:03]  *** Listing of results directory ***
[2026-03-25 19:51:03] total 429096
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc    585013 Mar 16 13:24 pilot3.tar.gz
[2026-03-25 19:51:03] -rwx------ 1 boinc boinc     36322 Mar 16 14:04 runpilot2-wrapper.sh
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc      5111 Mar 16 14:08 queuedata.json
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc       100 Mar 25 16:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 19:51:03] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 16:45 run_atlas
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc       105 Mar 25 16:45 job.xml
[2026-03-25 19:51:03] -rw-r--r-- 2 boinc boinc 226386558 Mar 25 16:45 EVNT.49133225._000007.pool.root.1
[2026-03-25 19:51:03] -rw-r--r-- 2 boinc boinc    597539 Mar 25 16:45 input.tar.gz
[2026-03-25 19:51:03] -rw-r--r-- 2 boinc boinc     15845 Mar 25 16:45 start_atlas.sh
[2026-03-25 19:51:03] drwxrwx--x 2 boinc boinc      4096 Mar 25 16:45 shared
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc         0 Mar 25 16:45 boinc_setup_complete
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc      6448 Mar 25 16:45 init_data.xml
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc         0 Mar 25 16:45 boinc_lockfile
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc      2596 Mar 25 16:45 pandaJob.out
[2026-03-25 19:51:03] -rw------- 1 boinc boinc   1011933 Mar 25 16:45 agis_schedconf.cvmfs.json
[2026-03-25 19:51:03] -rw------- 1 boinc boinc       428 Mar 25 16:45 workernode_map.json
[2026-03-25 19:51:03] drwx------ 5 boinc boinc      4096 Mar 25 16:45 pilot3
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc       530 Mar 25 19:50 boinc_task_state.xml
[2026-03-25 19:51:03] -rw------- 1 boinc boinc 205229701 Mar 25 19:50 HITS.49176258._000170.pool.root.1
[2026-03-25 19:51:03] -rw------- 1 boinc boinc      1030 Mar 25 19:50 memory_monitor_summary.json
[2026-03-25 19:51:03] -rw------- 1 boinc boinc   1511579 Mar 25 19:50 agis_ddmendpoints.agis.ALL.json
[2026-03-25 19:51:03] -rw------- 1 boinc boinc    350894 Mar 25 19:50 log.49176258._000170.job.log.tgz.1
[2026-03-25 19:51:03] -rw------- 1 boinc boinc      6319 Mar 25 19:50 heartbeat.json
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc        28 Mar 25 19:50 wrapper_checkpoint.txt
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc      8192 Mar 25 19:50 boinc_mmap_file
[2026-03-25 19:51:03] -rw------- 1 boinc boinc       747 Mar 25 19:51 pilotlog.txt
[2026-03-25 19:51:03] -rw------- 1 boinc boinc        95 Mar 25 19:51 pilot_heartbeat.json
[2026-03-25 19:51:03] -rw------- 1 boinc boinc   1572307 Mar 25 19:51 log.49176258._000170.job.log.1
[2026-03-25 19:51:03] -rw------- 1 boinc boinc       357 Mar 25 19:51 output.list
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc       620 Mar 25 19:51 runtime_log
[2026-03-25 19:51:03] -rw------- 1 boinc boinc   1945600 Mar 25 19:51 result.tar.gz
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc      8917 Mar 25 19:51 runtime_log.err
[2026-03-25 19:51:03] -rw------- 1 boinc boinc       664 Mar 25 19:51 8RPLDmbnMM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmREwLDmcerRPo.diag
[2026-03-25 19:51:03] -rw-r--r-- 1 boinc boinc     11635 Mar 25 19:51 stderr.txt
[2026-03-25 19:51:03] HITS file was successfully produced:
[2026-03-25 19:51:03] -rw------- 1 boinc boinc 205229701 Mar 25 19:50 shared/HITS.pool.root.1
[2026-03-25 19:51:03]  *** Contents of shared directory: ***
[2026-03-25 19:51:03] total 424012
[2026-03-25 19:51:03] -rw-r--r-- 2 boinc boinc 226386558 Mar 25 16:45 ATLAS.root_0
[2026-03-25 19:51:03] -rw-r--r-- 2 boinc boinc    597539 Mar 25 16:45 input.tar.gz
[2026-03-25 19:51:03] -rw-r--r-- 2 boinc boinc     15845 Mar 25 16:45 start_atlas.sh
[2026-03-25 19:51:03] -rw------- 1 boinc boinc 205229701 Mar 25 19:50 HITS.pool.root.1
[2026-03-25 19:51:03] -rw------- 1 boinc boinc   1945600 Mar 25 19:51 result.tar.gz
19:51:05 (1067220): run_atlas exited; CPU time 32095.784188
19:51:05 (1067220): called boinc_finish(0)

</stderr_txt>
]]>

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