Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:18:43 (882068): wrapper (7.7.26015): starting
20:18:43 (882068): wrapper: running run_atlas (--nthreads 3)
[2026-03-25 20:18:43] Arguments: --nthreads 3
[2026-03-25 20:18:43] Threads: 3
[2026-03-25 20:18:43] Checking for CVMFS
[2026-03-25 20:18:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 20:18:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 20:18:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 20:18:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 20:18:43] 2.9.2.0 869526 105 49392 157694 2 49 27676376 36864001 0 130560 0 50096 99.992 4098 4973 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-25 20:18:43] CVMFS is ok
[2026-03-25 20:18:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 20:18:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 20:18:43] Further information can be found at the LHC@home message board.
[2026-03-25 20:18:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 20:18:43] Checking for apptainer binary...
[2026-03-25 20:18:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-25 20:18:43] Running /usr/bin/apptainer --version
[2026-03-25 20:18:43] apptainer version 1.4.1-1.1
[2026-03-25 20:18:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 20:18:43] atlasA115
[2026-03-25 20:18:43] apptainer works
[2026-03-25 20:18:43] Set ATHENA_PROC_NUMBER=3
[2026-03-25 20:18:43] Set ATHENA_CORE_NUMBER=3
[2026-03-25 20:18:43] Starting ATLAS job with PandaID=7062336528
[2026-03-25 20:18:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 23:31:24]  *** The last 200 lines of the pilot log: ***
[2026-03-25 23:31:24] 2026-03-25 22:31:05,025 | INFO     | overall cleanup function is called
[2026-03-25 23:31:24] 2026-03-25 22:31:06,031 | INFO     | --- collectZombieJob: --- 10, [890535]
[2026-03-25 23:31:24] 2026-03-25 22:31:06,031 | INFO     | zombie collector waiting for pid 890535
[2026-03-25 23:31:24] 2026-03-25 22:31:06,031 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 23:31:24] 2026-03-25 22:31:06,031 | INFO     | collected zombie processes
[2026-03-25 23:31:24] 2026-03-25 22:31:06,032 | INFO     | will attempt to kill all subprocesses of pid=890535
[2026-03-25 23:31:24] 2026-03-25 22:31:06,073 | INFO     | process IDs to be killed: [890535] (in reverse order)
[2026-03-25 23:31:24] 2026-03-25 22:31:06,097 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 23:31:24] 2026-03-25 22:31:06,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 23:31:24] 2026-03-25 22:31:06,098 | INFO     | did not find any defunct processes belonging to 890535
[2026-03-25 23:31:24] 2026-03-25 22:31:06,099 | INFO     | did not find any defunct processes belonging to 890535
[2026-03-25 23:31:24] 2026-03-25 22:31:06,099 | INFO     | ready for new job
[2026-03-25 23:31:24] 2026-03-25 22:31:06,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 23:31:24] 2026-03-25 22:31:06,100 | INFO     | **************************************
[2026-03-25 23:31:24] 2026-03-25 22:31:06,100 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 23:31:24] 2026-03-25 22:31:06,100 | INFO     | **************************************
[2026-03-25 23:31:24] 2026-03-25 22:31:06,100 | INFO     | 
[2026-03-25 23:31:24] 2026-03-25 22:31:06,101 | INFO     | architecture information:
[2026-03-25 23:31:24] 2026-03-25 22:31:06,101 | INFO     | executing command: cat /etc/os-release
[2026-03-25 23:31:24] 2026-03-25 22:31:06,109 | INFO     | cat /etc/os-release:
[2026-03-25 23:31:24] NAME="CentOS Linux"
[2026-03-25 23:31:24] VERSION="7 (Core)"
[2026-03-25 23:31:24] ID="centos"
[2026-03-25 23:31:24] ID_LIKE="rhel fedora"
[2026-03-25 23:31:24] VERSION_ID="7"
[2026-03-25 23:31:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 23:31:24] ANSI_COLOR="0;31"
[2026-03-25 23:31:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 23:31:24] HOME_URL="https://www.centos.org/"
[2026-03-25 23:31:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 23:31:24] 
[2026-03-25 23:31:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 23:31:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 23:31:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 23:31:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 23:31:24] 
[2026-03-25 23:31:24] 2026-03-25 22:31:06,110 | INFO     | **************************************
[2026-03-25 23:31:24] 2026-03-25 22:31:06,613 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-25 23:31:24] 2026-03-25 22:31:06,626 | INFO     | sufficient remaining disk space (330091724800 B)
[2026-03-25 23:31:24] 2026-03-25 22:31:06,626 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 23:31:24] 2026-03-25 22:31:06,626 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 23:31:24] 2026-03-25 22:31:06,626 | INFO     | update_server=False
[2026-03-25 23:31:24] 2026-03-25 22:31:06,626 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 23:31:24] 2026-03-25 22:31:06,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 23:31:24] 2026-03-25 22:31:06,626 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-25 23:31:24] 2026-03-25 22:31:06,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 23:31:24] 2026-03-25 22:31:06,627 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 23:31:24] 2026-03-25 22:31:06,627 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 23:31:24] 2026-03-25 22:31:06,627 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 23:31:24] 2026-03-25 22:31:06,957 | INFO     | all job control threads have been joined
[2026-03-25 23:31:24] 2026-03-25 22:31:07,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 23:31:24] 2026-03-25 22:31:07,362 | INFO     | aborting loop
[2026-03-25 23:31:24] 2026-03-25 22:31:07,546 | INFO     | all data control threads have been joined
[2026-03-25 23:31:24] 2026-03-25 22:31:07,632 | INFO     | [job] retrieve thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:07,632 | INFO     | [job] queue monitor thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:07,655 | INFO     | [data] copytool_in thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:07,726 | INFO     | all payload control threads have been joined
[2026-03-25 23:31:24] 2026-03-25 22:31:07,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 23:31:24] 2026-03-25 22:31:07,962 | INFO     | [job] control thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:08,176 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:08,243 | INFO     | [monitor] cgroup control has ended
[2026-03-25 23:31:24] 2026-03-25 22:31:08,368 | INFO     | [job] job monitor thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:08,552 | INFO     | [data] control thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:08,612 | INFO     | [payload] failed_post thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:08,732 | INFO     | [payload] control thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:08,902 | INFO     | [job] validate thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:08,949 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:08,951 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:09,172 | INFO     | [payload] validate_post thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:09,908 | INFO     | [data] copytool_out thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:10,633 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:17,335 | INFO     | job.realtimelogging is not enabled
[2026-03-25 23:31:24] 2026-03-25 22:31:18,340 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 23:31:24] 2026-03-25 22:31:19,207 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140604456871744)>', '<ExcThread(monitor, started 140604101076736)>']
[2026-03-25 23:31:24] 2026-03-25 22:31:19,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 23:31:24] 2026-03-25 22:31:19,693 | INFO     | [monitor] control thread has ended
[2026-03-25 23:31:24] 2026-03-25 22:31:24,233 | INFO     | all workflow threads have been joined
[2026-03-25 23:31:24] 2026-03-25 22:31:24,233 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 23:31:24] 2026-03-25 22:31:24,233 | INFO     | traces error code: 0
[2026-03-25 23:31:24] 2026-03-25 22:31:24,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 23:31:24] 2026-03-25 22:31:24,285 [wrapper] ==== pilot stdout END ====
[2026-03-25 23:31:24] 2026-03-25 22:31:24,288 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 23:31:24] 2026-03-25 22:31:24,290 [wrapper] pilotpid: 886108
[2026-03-25 23:31:24] 2026-03-25 22:31:24,292 [wrapper] Pilot exit status: 0
[2026-03-25 23:31:24] 2026-03-25 22:31:24,299 [wrapper] pandaids: 7062336528
[2026-03-25 23:31:24] 2026-03-25 22:31:24,314 [wrapper] cleanup supervisor_pilot  898040 886109
[2026-03-25 23:31:24] 2026-03-25 22:31:24,316 [wrapper] Test setup, not cleaning
[2026-03-25 23:31:24] 2026-03-25 22:31:24,319 [wrapper] apfmon messages muted
[2026-03-25 23:31:24] 2026-03-25 22:31:24,321 [wrapper] ==== wrapper stdout END ====
[2026-03-25 23:31:24] 2026-03-25 22:31:24,323 [wrapper] ==== wrapper stderr END ====
[2026-03-25 23:31:24]  *** Error codes and diagnostics ***
[2026-03-25 23:31:24]     "exeErrorCode": 0,
[2026-03-25 23:31:24]     "exeErrorDiag": "",
[2026-03-25 23:31:24]     "pilotErrorCode": 0,
[2026-03-25 23:31:24]     "pilotErrorDiag": "",
[2026-03-25 23:31:24]  *** Listing of results directory ***
[2026-03-25 23:31:24] total 472540
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc    585013 Mar 22 20:50 pilot3.tar.gz
[2026-03-25 23:31:24] -rwx------ 1 boinc boinc     36322 Mar 22 21:14 runpilot2-wrapper.sh
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc      5111 Mar 22 21:15 queuedata.json
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc       100 Mar 25 20:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 23:31:24] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 20:18 run_atlas
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc       105 Mar 25 20:18 job.xml
[2026-03-25 23:31:24] -rw-r--r-- 2 boinc boinc 238245282 Mar 25 20:18 EVNT.49136696._000001.pool.root.1
[2026-03-25 23:31:24] drwxrwx--x 2 boinc boinc      4096 Mar 25 20:18 shared
[2026-03-25 23:31:24] -rw-r--r-- 2 boinc boinc    597541 Mar 25 20:18 input.tar.gz
[2026-03-25 23:31:24] -rw-r--r-- 2 boinc boinc     15845 Mar 25 20:18 start_atlas.sh
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc         0 Mar 25 20:18 boinc_setup_complete
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc      6441 Mar 25 20:18 init_data.xml
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc         0 Mar 25 20:18 boinc_lockfile
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc      2627 Mar 25 20:18 pandaJob.out
[2026-03-25 23:31:24] -rw------- 1 boinc boinc   1012179 Mar 25 20:18 agis_schedconf.cvmfs.json
[2026-03-25 23:31:24] -rw------- 1 boinc boinc       430 Mar 25 20:18 workernode_map.json
[2026-03-25 23:31:24] drwx------ 5 boinc boinc      4096 Mar 25 20:18 pilot3
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc       530 Mar 25 23:30 boinc_task_state.xml
[2026-03-25 23:31:24] -rw------- 1 boinc boinc 237761046 Mar 25 23:30 HITS.49182303._000154.pool.root.1
[2026-03-25 23:31:24] -rw------- 1 boinc boinc        95 Mar 25 23:30 pilot_heartbeat.json
[2026-03-25 23:31:24] -rw------- 1 boinc boinc      1019 Mar 25 23:30 memory_monitor_summary.json
[2026-03-25 23:31:24] -rw------- 1 boinc boinc   1511579 Mar 25 23:31 agis_ddmendpoints.agis.ALL.json
[2026-03-25 23:31:24] -rw------- 1 boinc boinc    343656 Mar 25 23:31 log.49182303._000154.job.log.tgz.1
[2026-03-25 23:31:24] -rw------- 1 boinc boinc      6315 Mar 25 23:31 heartbeat.json
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc      8192 Mar 25 23:31 boinc_mmap_file
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc        28 Mar 25 23:31 wrapper_checkpoint.txt
[2026-03-25 23:31:24] -rw------- 1 boinc boinc      4624 Mar 25 23:31 pilotlog.txt
[2026-03-25 23:31:24] -rw------- 1 boinc boinc   1629856 Mar 25 23:31 log.49182303._000154.job.log.1
[2026-03-25 23:31:24] -rw------- 1 boinc boinc       357 Mar 25 23:31 output.list
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc       620 Mar 25 23:31 runtime_log
[2026-03-25 23:31:24] -rw------- 1 boinc boinc   1986560 Mar 25 23:31 result.tar.gz
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc      8912 Mar 25 23:31 runtime_log.err
[2026-03-25 23:31:24] -rw------- 1 boinc boinc       663 Mar 25 23:31 frHMDmnMeO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmjj6LDmIlIuXn.diag
[2026-03-25 23:31:24] -rw-r--r-- 1 boinc boinc     10707 Mar 25 23:31 stderr.txt
[2026-03-25 23:31:24] HITS file was successfully produced:
[2026-03-25 23:31:24] -rw------- 1 boinc boinc 237761046 Mar 25 23:30 shared/HITS.pool.root.1
[2026-03-25 23:31:24]  *** Contents of shared directory: ***
[2026-03-25 23:31:24] total 467404
[2026-03-25 23:31:24] -rw-r--r-- 2 boinc boinc 238245282 Mar 25 20:18 ATLAS.root_0
[2026-03-25 23:31:24] -rw-r--r-- 2 boinc boinc    597541 Mar 25 20:18 input.tar.gz
[2026-03-25 23:31:24] -rw-r--r-- 2 boinc boinc     15845 Mar 25 20:18 start_atlas.sh
[2026-03-25 23:31:24] -rw------- 1 boinc boinc 237761046 Mar 25 23:30 HITS.pool.root.1
[2026-03-25 23:31:24] -rw------- 1 boinc boinc   1986560 Mar 25 23:31 result.tar.gz
23:31:25 (882068): run_atlas exited; CPU time 33647.955538
23:31:25 (882068): called boinc_finish(0)

</stderr_txt>
]]>

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