Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:46:46 (4829): wrapper (7.7.26015): starting
06:46:46 (4829): wrapper: running run_atlas (--nthreads 8)
[2026-03-26 06:46:46] Arguments: --nthreads 8
[2026-03-26 06:46:46] Threads: 8
[2026-03-26 06:46:46] Checking for CVMFS
[2026-03-26 06:46:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 06:46:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 06:46:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 06:46:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 06:46:51] 2.11.2.0 21086 144452 137012 157709 3 54 20444135 25165825 4607 130560 159 42101618 99.844 27412838 928 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-26 06:46:51] CVMFS is ok
[2026-03-26 06:46:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 06:46:51] Checking for apptainer binary...
[2026-03-26 06:46:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 06:46:51] Running /usr/bin/apptainer --version
[2026-03-26 06:46:51] apptainer version 1.3.2-1.el7
[2026-03-26 06:46:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 06:47:07] cg-vwn408.simple-grid.lan
[2026-03-26 06:47:07] apptainer works
[2026-03-26 06:47:07] Set ATHENA_PROC_NUMBER=8
[2026-03-26 06:47:07] Set ATHENA_CORE_NUMBER=8
[2026-03-26 06:47:07] Starting ATLAS job with PandaID=7063747498
[2026-03-26 06:47:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 17:49:07]  *** The last 200 lines of the pilot log: ***
[2026-03-26 17:49:07] 2026-03-26 16:48:14,491 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7063747498/memory_monitor_summary.json (trf name=prmon)
[2026-03-26 17:49:07] 2026-03-26 16:48:14,492 | INFO     | extracted standard info from prmon json
[2026-03-26 17:49:07] 2026-03-26 16:48:14,492 | INFO     | extracted standard memory fields from prmon json
[2026-03-26 17:49:07] 2026-03-26 16:48:14,492 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-26 17:49:07] 2026-03-26 16:48:14,492 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-26 17:49:07] 2026-03-26 16:48:14,492 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-26 17:49:07] 2026-03-26 16:48:14,505 | INFO     | fitting pss+swap vs Time
[2026-03-26 17:49:07] 2026-03-26 16:48:14,506 | INFO     | sum of square deviations: 81667912640.0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,516 | INFO     | monitor loop #2891: job 0:7063747498 is in state 'finished'
[2026-03-26 17:49:07] 2026-03-26 16:48:14,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-26 17:49:07] 2026-03-26 16:48:14,519 | INFO     | sum of deviations: 409116010484.0001
[2026-03-26 17:49:07] 2026-03-26 16:48:14,519 | INFO     | mean x: 1774524120.0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,519 | INFO     | mean y: 2490971.5897035883
[2026-03-26 17:49:07] 2026-03-26 16:48:14,519 | INFO     | intersect: -8887000690.603844
[2026-03-26 17:49:07] 2026-03-26 16:48:14,520 | INFO     | chi2: 7.23452520067746
[2026-03-26 17:49:07] 2026-03-26 16:48:14,521 | INFO     | sum of square deviations: 79771672435.0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,533 | INFO     | sum of deviations: 448977574923.4999
[2026-03-26 17:49:07] 2026-03-26 16:48:14,533 | INFO     | mean x: 1774523967.5
[2026-03-26 17:49:07] 2026-03-26 16:48:14,534 | INFO     | mean y: 2494155.422955975
[2026-03-26 17:49:07] 2026-03-26 16:48:14,534 | INFO     | intersect: -9985029526.256987
[2026-03-26 17:49:07] 2026-03-26 16:48:14,535 | INFO     | chi2: 6.476674217031865
[2026-03-26 17:49:07] 2026-03-26 16:48:14,535 | INFO     | current chi2=6.476674217031865 (change=10.47547644971404 %)
[2026-03-26 17:49:07] 2026-03-26 16:48:14,535 | INFO     | right removable region: 635
[2026-03-26 17:49:07] 2026-03-26 16:48:14,536 | INFO     | sum of square deviations: 79771672435.0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,548 | INFO     | sum of deviations: 170669130508.49988
[2026-03-26 17:49:07] 2026-03-26 16:48:14,548 | INFO     | mean x: 1774524272.5
[2026-03-26 17:49:07] 2026-03-26 16:48:14,549 | INFO     | mean y: 2510146.3349056602
[2026-03-26 17:49:07] 2026-03-26 16:48:14,549 | INFO     | intersect: -3794031977.068343
[2026-03-26 17:49:07] 2026-03-26 16:48:14,550 | INFO     | chi2: 2.24088642283501
[2026-03-26 17:49:07] 2026-03-26 16:48:14,550 | INFO     | current chi2=2.24088642283501 (change=69.02510723682092 %)
[2026-03-26 17:49:07] 2026-03-26 16:48:14,551 | INFO     | sum of square deviations: 77905014180.0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,563 | INFO     | sum of deviations: 56256097100.00005
[2026-03-26 17:49:07] 2026-03-26 16:48:14,563 | INFO     | mean x: 1774524425.0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,563 | INFO     | mean y: 2519471.6656101425
[2026-03-26 17:49:07] 2026-03-26 16:48:14,563 | INFO     | intersect: -1278884805.1947854
[2026-03-26 17:49:07] 2026-03-26 16:48:14,564 | INFO     | chi2: 0.8252588616445046
[2026-03-26 17:49:07] 2026-03-26 16:48:14,564 | INFO     | current chi2=0.8252588616445046 (change=63.17266001369022 %)
[2026-03-26 17:49:07] 2026-03-26 16:48:14,565 | INFO     | sum of square deviations: 76067705312.5
[2026-03-26 17:49:07] 2026-03-26 16:48:14,577 | INFO     | sum of deviations: 45337189820.00004
[2026-03-26 17:49:07] 2026-03-26 16:48:14,577 | INFO     | mean x: 1774524577.5
[2026-03-26 17:49:07] 2026-03-26 16:48:14,577 | INFO     | mean y: 2520377.2492012777
[2026-03-26 17:49:07] 2026-03-26 16:48:14,577 | INFO     | intersect: -1055115807.250667
[2026-03-26 17:49:07] 2026-03-26 16:48:14,578 | INFO     | chi2: 0.8174138437404458
[2026-03-26 17:49:07] 2026-03-26 16:48:14,578 | INFO     | current chi2=0.8174138437404458 (change=0.9506129856546961 %)
[2026-03-26 17:49:07] 2026-03-26 16:48:14,578 | INFO     | left removable region: 30
[2026-03-26 17:49:07] 2026-03-26 16:48:14,579 | INFO     | sum of square deviations: 68666254910.0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,590 | INFO     | sum of deviations: 63704103648.00001
[2026-03-26 17:49:07] 2026-03-26 16:48:14,590 | INFO     | mean x: 1774524852.0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,590 | INFO     | mean y: 2525887.0727272728
[2026-03-26 17:49:07] 2026-03-26 16:48:14,591 | INFO     | intersect: -1643763330.912525
[2026-03-26 17:49:07] 2026-03-26 16:48:14,591 | INFO     | chi2: 0.009152246588848754
[2026-03-26 17:49:07] 2026-03-26 16:48:14,592 | INFO     | current memory leak: 0.93 B/s (using 605 data points, chi2=0.01)
[2026-03-26 17:49:07] 2026-03-26 16:48:14,593 | INFO     | could have reported an average CPU frequency of 1999 MHz (25 samples)
[2026-03-26 17:49:07] 2026-03-26 16:48:14,593 | INFO     | ..............................
[2026-03-26 17:49:07] 2026-03-26 16:48:14,593 | INFO     | . Timing measurements:
[2026-03-26 17:49:07] 2026-03-26 16:48:14,593 | INFO     | . get job = 0 s
[2026-03-26 17:49:07] 2026-03-26 16:48:14,593 | INFO     | . initial setup = 93 s
[2026-03-26 17:49:07] 2026-03-26 16:48:14,593 | INFO     | . payload setup = 169 s
[2026-03-26 17:49:07] 2026-03-26 16:48:14,593 | INFO     | . stage-in = 0 s
[2026-03-26 17:49:07] 2026-03-26 16:48:14,594 | INFO     | . payload execution = 39200 s
[2026-03-26 17:49:07] 2026-03-26 16:48:14,594 | INFO     | . stage-out = 2 s
[2026-03-26 17:49:07] 2026-03-26 16:48:14,594 | INFO     | . log creation = 0 s
[2026-03-26 17:49:07] 2026-03-26 16:48:14,594 | INFO     | ..............................
[2026-03-26 17:49:07] 2026-03-26 16:48:14,707 | INFO     | 
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | job summary report
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | --------------------------------------------------
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | PanDA job id: 7063747498
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | task id: 49182524
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | errors: (none)
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | pilot state: finished 
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | transexitcode: 0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | exeerrorcode: 0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,708 | INFO     | exeerrordiag: 
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | exitcode: 0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | exitmsg: OK
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | cpuconsumptiontime: 152871 s
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | nevents: 400
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | neventsw: 0
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | pid: 13687
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | pgrp: 13687
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | corecount: 8
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | event service: False
[2026-03-26 17:49:07] 2026-03-26 16:48:14,709 | INFO     | sizes: {0: 2279761, 1: 2280222, 2: 2280222, 39373: 2322227, 39376: 2331225, 39380: 2331281, 39382: 2331667}
[2026-03-26 17:49:07] 2026-03-26 16:48:14,710 | INFO     | --------------------------------------------------
[2026-03-26 17:49:07] 2026-03-26 16:48:14,710 | INFO     | 
[2026-03-26 17:49:07] 2026-03-26 16:48:14,710 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-03-26 17:49:07] 2026-03-26 16:48:14,800 | INFO     | time since job start (39384s) is within the limit (345600.0s)
[2026-03-26 17:49:07] 2026-03-26 16:48:15,047 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,047 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,047 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,047 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,047 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,047 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,047 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,048 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-26 17:49:07] 2026-03-26 16:48:15,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,049 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-26 17:49:07] 2026-03-26 16:48:15,049 | INFO     | job 7063747498 has completed (purged errors)
[2026-03-26 17:49:07] 2026-03-26 16:48:15,049 | INFO     | overall cleanup function is called
[2026-03-26 17:49:07] 2026-03-26 16:48:16,058 | INFO     | --- collectZombieJob: --- 10, [13687]
[2026-03-26 17:49:07] 2026-03-26 16:48:16,058 | INFO     | zombie collector waiting for pid 13687
[2026-03-26 17:49:07] 2026-03-26 16:48:16,059 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-26 17:49:07] 2026-03-26 16:48:16,059 | INFO     | collected zombie processes
[2026-03-26 17:49:07] 2026-03-26 16:48:16,059 | INFO     | will attempt to kill all subprocesses of pid=13687
[2026-03-26 17:49:07] 2026-03-26 16:48:16,169 | INFO     | process IDs to be killed: [13687] (in reverse order)
[2026-03-26 17:49:07] 2026-03-26 16:48:16,727 | WARNING  | found no corresponding commands to process id(s)
[2026-03-26 17:49:07] 2026-03-26 16:48:16,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-26 17:49:07] 2026-03-26 16:48:16,730 | INFO     | did not find any defunct processes belonging to 13687
[2026-03-26 17:49:07] 2026-03-26 16:48:16,733 | INFO     | did not find any defunct processes belonging to 13687
[2026-03-26 17:49:07] 2026-03-26 16:48:16,734 | INFO     | ready for new job
[2026-03-26 17:49:07] 2026-03-26 16:48:16,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-26 17:49:07] 2026-03-26 16:48:16,740 | INFO     | **************************************
[2026-03-26 17:49:07] 2026-03-26 16:48:16,741 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-26 17:49:07] 2026-03-26 16:48:16,741 | INFO     | **************************************
[2026-03-26 17:49:07] 2026-03-26 16:48:16,741 | INFO     | 
[2026-03-26 17:49:07] 2026-03-26 16:48:16,742 | INFO     | pilot is running in a VM
[2026-03-26 17:49:07] 2026-03-26 16:48:16,742 | INFO     | architecture information:
[2026-03-26 17:49:07] 2026-03-26 16:48:16,748 | INFO     | executing command: cat /etc/os-release
[2026-03-26 17:49:07] 2026-03-26 16:48:16,991 | INFO     | cat /etc/os-release:
[2026-03-26 17:49:07] NAME="CentOS Linux"
[2026-03-26 17:49:07] VERSION="7 (Core)"
[2026-03-26 17:49:07] ID="centos"
[2026-03-26 17:49:07] ID_LIKE="rhel fedora"
[2026-03-26 17:49:07] VERSION_ID="7"
[2026-03-26 17:49:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-26 17:49:07] ANSI_COLOR="0;31"
[2026-03-26 17:49:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-26 17:49:07] HOME_URL="https://www.centos.org/"
[2026-03-26 17:49:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-26 17:49:07] 
[2026-03-26 17:49:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-26 17:49:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-26 17:49:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-26 17:49:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-26 17:49:07] 
[2026-03-26 17:49:07] 2026-03-26 16:48:16,991 | INFO     | **************************************
[2026-03-26 17:49:07] 2026-03-26 16:48:17,494 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-03-26 17:49:07] 2026-03-26 16:48:17,684 | INFO     | sufficient remaining disk space (496814260224 B)
[2026-03-26 17:49:07] 2026-03-26 16:48:17,684 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-26 17:49:07] 2026-03-26 16:48:17,684 | INFO     | current server update state: UPDATING_FINAL
[2026-03-26 17:49:07] 2026-03-26 16:48:17,685 | INFO     | update_server=False
[2026-03-26 17:49:07] 2026-03-26 16:48:17,685 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-26 17:49:07] 2026-03-26 16:48:17,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-26 17:49:07] 2026-03-26 16:48:18,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 17:49:07] 2026-03-26 16:48:18,030 | INFO     | aborting loop
[2026-03-26 17:49:07] 2026-03-26 16:48:18,317 | INFO     | all data control threads have been joined
[2026-03-26 17:49:07] 2026-03-26 16:48:18,412 | INFO     | all job control threads have been joined
[2026-03-26 17:49:07] 2026-03-26 16:48:18,690 | INFO     | [job] retrieve thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:18,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-26 17:49:07] 2026-03-26 16:48:18,877 | INFO     | [data] copytool_in thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:18,897 | INFO     | [payload] failed_post thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:19,036 | INFO     | [job] job monitor thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:19,129 | INFO     | all payload control threads have been joined
[2026-03-26 17:49:07] 2026-03-26 16:48:19,133 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:19,255 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:19,279 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:19,323 | INFO     | [data] control thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:19,418 | INFO     | [job] control thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:19,478 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:19,692 | INFO     | [data] copytool_out thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:19,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-26 17:49:07] 2026-03-26 16:48:20,071 | INFO     | [payload] validate_post thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:20,127 | INFO     | [job] validate thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:20,135 | INFO     | [payload] control thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:20,728 | INFO     | [job] queue monitor thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:22,849 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 17:49:07] 2026-03-26 16:48:47,991 | INFO     | PID=9081 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-26 17:49:07] 2026-03-26 16:48:47,992 | INFO     | .. there are 9 such processes running
[2026-03-26 17:49:07] 2026-03-26 16:48:47,992 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 17:49:07] 2026-03-26 16:48:47,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 17:49:07] 2026-03-26 16:48:47,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 17:49:07] 2026-03-26 16:48:57,786 | INFO     | [monitor] cgroup control has ended
[2026-03-26 17:49:07] 2026-03-26 16:48:57,794 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139797517465408)>', '<ExcThread(monitor, started 139796907267840)>']
[2026-03-26 17:49:07] 2026-03-26 16:48:58,051 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 17:49:07] 2026-03-26 16:48:58,051 | INFO     | [monitor] control thread has ended
[2026-03-26 17:49:07] 2026-03-26 16:49:02,819 | INFO     | all workflow threads have been joined
[2026-03-26 17:49:07] 2026-03-26 16:49:02,819 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 17:49:07] 2026-03-26 16:49:02,820 | INFO     | traces error code: 0
[2026-03-26 17:49:07] 2026-03-26 16:49:02,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 17:49:07] 2026-03-26 16:49:03,182 [wrapper] ==== pilot stdout END ====
[2026-03-26 17:49:07] 2026-03-26 16:49:03,276 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 17:49:07] 2026-03-26 16:49:03,393 [wrapper] pilotpid: 9081
[2026-03-26 17:49:07] 2026-03-26 16:49:03,501 [wrapper] Pilot exit status: 0
[2026-03-26 17:49:07] 2026-03-26 16:49:03,989 [wrapper] pandaids: 7063747498
[2026-03-26 17:49:07] 2026-03-26 16:49:04,630 [wrapper] cleanup supervisor_pilot 23600 9082
[2026-03-26 17:49:07] 2026-03-26 16:49:04,660 [wrapper] Test setup, not cleaning
[2026-03-26 17:49:07] 2026-03-26 16:49:04,716 [wrapper] apfmon messages muted
[2026-03-26 17:49:07] 2026-03-26 16:49:04,769 [wrapper] ==== wrapper stdout END ====
[2026-03-26 17:49:07] 2026-03-26 16:49:04,818 [wrapper] ==== wrapper stderr END ====
[2026-03-26 17:49:07]  *** Error codes and diagnostics ***
[2026-03-26 17:49:07]     "exeErrorCode": 0,
[2026-03-26 17:49:07]     "exeErrorDiag": "",
[2026-03-26 17:49:07]     "pilotErrorCode": 0,
[2026-03-26 17:49:07]     "pilotErrorDiag": "",
[2026-03-26 17:49:07]  *** Listing of results directory ***
[2026-03-26 17:49:07] total 486812
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc    585013 Mar 24 02:39 pilot3.tar.gz
[2026-03-26 17:49:07] -rwx------. 1 boinc boinc     36322 Mar 24 02:42 runpilot2-wrapper.sh
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc      5111 Mar 24 02:43 queuedata.json
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc       100 Mar 26 06:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 17:49:07] -rwxr-xr-x. 1 boinc boinc      7986 Mar 26 06:46 run_atlas
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc       105 Mar 26 06:46 job.xml
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc      6391 Mar 26 06:46 init_data.xml
[2026-03-26 17:49:07] -rw-r--r--. 2 boinc boinc 241053478 Mar 26 06:46 EVNT.49137320._000017.pool.root.1
[2026-03-26 17:49:07] -rw-r--r--. 2 boinc boinc     15845 Mar 26 06:46 start_atlas.sh
[2026-03-26 17:49:07] drwxrwx--x. 2 boinc boinc        68 Mar 26 06:46 shared
[2026-03-26 17:49:07] -rw-r--r--. 2 boinc boinc    597542 Mar 26 06:46 input.tar.gz
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc         0 Mar 26 06:46 boinc_lockfile
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc      2609 Mar 26 06:47 pandaJob.out
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc       415 Mar 26 06:51 workernode_map.json
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc   1012182 Mar 26 06:51 agis_schedconf.cvmfs.json
[2026-03-26 17:49:07] drwx------. 5 boinc boinc      4096 Mar 26 06:51 pilot3
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc       531 Mar 26 17:47 boinc_task_state.xml
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc 241118299 Mar 26 17:47 HITS.49182524._000973.pool.root.1
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc        95 Mar 26 17:47 pilot_heartbeat.json
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc      1019 Mar 26 17:48 memory_monitor_summary.json
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc   1511579 Mar 26 17:48 agis_ddmendpoints.agis.ALL.json
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc    791668 Mar 26 17:48 log.49182524._000973.job.log.tgz.1
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc      6321 Mar 26 17:48 heartbeat.json
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc      8192 Mar 26 17:48 boinc_mmap_file
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc        29 Mar 26 17:48 wrapper_checkpoint.txt
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc      4879 Mar 26 17:49 pilotlog.txt
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc   5404370 Mar 26 17:49 log.49182524._000973.job.log.1
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc       357 Mar 26 17:49 output.list
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc       620 Mar 26 17:49 runtime_log
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc   6215680 Mar 26 17:49 result.tar.gz
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc      8816 Mar 26 17:49 runtime_log.err
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc       658 Mar 26 17:49 ecKODmvx5O9n9Rq4apOajLDm4fhM0noT9bVoINGKDmUSFKDm4akc4m.diag
[2026-03-26 17:49:07] -rw-r--r--. 1 boinc boinc     20763 Mar 26 17:49 stderr.txt
[2026-03-26 17:49:07] HITS file was successfully produced:
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc 241118299 Mar 26 17:47 shared/HITS.pool.root.1
[2026-03-26 17:49:07]  *** Contents of shared directory: ***
[2026-03-26 17:49:07] total 477544
[2026-03-26 17:49:07] -rw-r--r--. 2 boinc boinc 241053478 Mar 26 06:46 ATLAS.root_0
[2026-03-26 17:49:07] -rw-r--r--. 2 boinc boinc     15845 Mar 26 06:46 start_atlas.sh
[2026-03-26 17:49:07] -rw-r--r--. 2 boinc boinc    597542 Mar 26 06:46 input.tar.gz
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc 241118299 Mar 26 17:47 HITS.pool.root.1
[2026-03-26 17:49:07] -rw-------. 1 boinc boinc   6215680 Mar 26 17:49 result.tar.gz
17:49:08 (4829): run_atlas exited; CPU time 153499.405773
17:49:08 (4829): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN