Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:13:29 (3805754): wrapper (7.7.26015): starting
13:13:29 (3805754): wrapper: running run_atlas (--nthreads 12)
[2026-03-25 13:13:29] Arguments: --nthreads 12
[2026-03-25 13:13:29] Threads: 12
[2026-03-25 13:13:29] Checking for CVMFS
[2026-03-25 13:13:29] No cvmfs_config command found, will try listing directly
[2026-03-25 13:13:29] CVMFS is ok
[2026-03-25 13:13:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 13:13:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 13:13:29] Further information can be found at the LHC@home message board.
[2026-03-25 13:13:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 13:13:29] Checking for apptainer binary...
[2026-03-25 13:13:29] which: no apptainer in ((null))
[2026-03-25 13:13:29] apptainer is not installed, using version from CVMFS
[2026-03-25 13:13:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 13:13:29] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot240/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-25 13:13:29] apptainer works
[2026-03-25 13:13:29] Set ATHENA_PROC_NUMBER=12
[2026-03-25 13:13:29] Set ATHENA_CORE_NUMBER=12
[2026-03-25 13:13:29] Starting ATLAS job with PandaID=7063737714
[2026-03-25 13:13:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot240/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 13:58:50]  *** The last 200 lines of the pilot log: ***
[2026-03-25 13:58:50] 2026-03-25 12:57:43,925 | INFO     | transferring file log.49192262._000036.job.log.tgz.1 from /var/lib/boinc/var/slot240/slots/1/PanDA_Pilot-7063737714/log.49192262._000036.job.log.tgz.1 to /var/lib/
[2026-03-25 13:58:50] 2026-03-25 12:57:43,925 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot240/slots/1/PanDA_Pilot-7063737714/log.49192262._000036.job.log.tgz.1 /var/lib/boinc/var/slot240/slots/1/
[2026-03-25 13:58:50] 2026-03-25 12:57:43,937 | INFO     | adding to output.list: log.49192262._000036.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/b8/log.49192262._000036.job.log.tg
[2026-03-25 13:58:50] 2026-03-25 12:57:43,938 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-25 13:58:50] 2026-03-25 12:57:43,938 | INFO     | summary of transferred files:
[2026-03-25 13:58:50] 2026-03-25 12:57:43,938 | INFO     |  -- lfn=log.49192262._000036.job.log.tgz.1, status_code=0, status=transferred
[2026-03-25 13:58:50] 2026-03-25 12:57:43,938 | INFO     | stage-out finished correctly
[2026-03-25 13:58:50] 2026-03-25 12:57:44,195 | INFO     | PID=3810306 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-25 13:58:50] 2026-03-25 12:57:44,195 | INFO     | .. there are 11 such processes running
[2026-03-25 13:58:50] 2026-03-25 12:57:45,196 | INFO     | time since job start (2644s) is within the limit (345600.0s)
[2026-03-25 13:58:50] 2026-03-25 12:57:45,881 | WARNING  | process 3816053 can no longer be monitored (due to stat problems) - aborting
[2026-03-25 13:58:50] 2026-03-25 12:57:45,881 | INFO     | using path: /var/lib/boinc/var/slot240/slots/1/PanDA_Pilot-7063737714/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 13:58:50] 2026-03-25 12:57:45,882 | INFO     | using path: /var/lib/boinc/var/slot240/slots/1/PanDA_Pilot-7063737714/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 13:58:50] 2026-03-25 12:57:45,882 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-25 13:58:50] 2026-03-25 12:57:45,882 | WARNING  | maxPSS not found in memory monitor output
[2026-03-25 13:58:50] 2026-03-25 12:57:45,882 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3954070 B
[2026-03-25 13:58:50] 2026-03-25 12:57:45,882 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15835 B
[2026-03-25 13:58:50] 2026-03-25 12:57:45,882 | INFO     | executing command: df -mP /var/lib/boinc/var/slot240/slots/1
[2026-03-25 13:58:50] 2026-03-25 12:57:45,895 | INFO     | sufficient remaining disk space (20256391168 B)
[2026-03-25 13:58:50] 2026-03-25 12:57:45,895 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-25 13:58:50] 2026-03-25 12:57:45,896 | INFO     | size of work directory /var/lib/boinc/var/slot240/slots/1/PanDA_Pilot-7063737714: 4239745 B (within 5033164800 B limit)
[2026-03-25 13:58:50] 2026-03-25 12:57:45,896 | INFO     | pfn file=/var/lib/boinc/var/slot240/slots/1/PanDA_Pilot-7063737714/HITS.49192262._000036.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-25 13:58:50] 2026-03-25 12:57:45,896 | INFO     | total size of present files: 0 B (workdir size: 4239745 B)
[2026-03-25 13:58:50] 2026-03-25 12:57:45,896 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot240/slots/1/PanDA_Pilot-7063737714/HITS.49192262._000036.pool.root.1 since it does not exist
[2026-03-25 13:58:50] 2026-03-25 12:57:46,239 | INFO     | number of running child processes to parent process 3816053: 1
[2026-03-25 13:58:50] 2026-03-25 12:57:46,239 | INFO     | maximum number of monitored processes: 6
[2026-03-25 13:58:50] 2026-03-25 12:57:46,342 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-25 13:58:50] 2026-03-25 12:57:46,739 | INFO     | job 7063737714 has state=finished
[2026-03-25 13:58:50] 2026-03-25 12:57:46,739 | INFO     | preparing for final server update for job 7063737714 in state='finished'
[2026-03-25 13:58:50] 2026-03-25 12:57:47,201 | INFO     | time since job start (2646s) is within the limit (345600.0s)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,294 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,294 | INFO     | reading metadata from: /var/lib/boinc/var/slot240/slots/1/PanDA_Pilot-7063737714/jobReport.json
[2026-03-25 13:58:50] 2026-03-25 12:57:47,295 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot240/slots/1/workernode_map.json
[2026-03-25 13:58:50] 2026-03-25 12:57:47,296 | INFO     | this job has now completed (state=finished)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,296 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,296 | INFO     | log transfer has been attempted: DONE
[2026-03-25 13:58:50] 2026-03-25 12:57:47,296 | INFO     | job 7063737714 has finished - writing final server update
[2026-03-25 13:58:50] 2026-03-25 12:57:47,296 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2334572/.job.ad'
[2026-03-25 13:58:50] 2026-03-25 12:57:47,296 | INFO     | total number of processed events: 400 (read)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,312 | INFO     | using path: /var/lib/boinc/var/slot240/slots/1/PanDA_Pilot-7063737714/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,313 | INFO     | extracted standard info from prmon json
[2026-03-25 13:58:50] 2026-03-25 12:57:47,313 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 13:58:50] 2026-03-25 12:57:47,313 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 13:58:50] 2026-03-25 12:57:47,313 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 13:58:50] 2026-03-25 12:57:47,313 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | fitting pss+swap vs Time
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | sum of square deviations: 14456085.0
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | sum of deviations: 183622352.5
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | mean x: 1774442214.5
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | mean y: 2735140.25
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | intersect: -22536372356.821274
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | chi2: 0.00028587542355093504
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | current memory leak: 12.70 B/s (using 36 data points, chi2=0.00)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | could have reported an average CPU frequency of 3610 MHz (5 samples)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | ..............................
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | . Timing measurements:
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | . get job = 0 s
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | . initial setup = 4 s
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | . payload setup = 6 s
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | . stage-in = 0 s
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | . payload execution = 2621 s
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | . stage-out = 0 s
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | . log creation = 0 s
[2026-03-25 13:58:50] 2026-03-25 12:57:47,314 | INFO     | ..............................
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | 
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | job summary report
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | --------------------------------------------------
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | PanDA job id: 7063737714
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | task id: 49192262
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | errors: (none)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | pilot state: finished 
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | transexitcode: 0
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | exeerrorcode: 0
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | exeerrordiag: 
[2026-03-25 13:58:50] 2026-03-25 12:57:47,360 | INFO     | exitcode: 0
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | exitmsg: OK
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | cpuconsumptiontime: 28207 s
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | nevents: 400
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | neventsw: 0
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | pid: 3816053
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | pgrp: 3816053
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | corecount: 12
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | event service: False
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | sizes: {0: 2280260, 11: 2280260, 2631: 2305493, 2632: 2314515, 2634: 2314599, 2635: 2314825}
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | --------------------------------------------------
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | 
[2026-03-25 13:58:50] 2026-03-25 12:57:47,361 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot240/slots/1
[2026-03-25 13:58:50] 2026-03-25 12:57:47,376 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | job 7063737714 has completed (purged errors)
[2026-03-25 13:58:50] 2026-03-25 12:57:47,377 | INFO     | overall cleanup function is called
[2026-03-25 13:58:50] 2026-03-25 12:57:48,385 | INFO     | --- collectZombieJob: --- 10, [3816053]
[2026-03-25 13:58:50] 2026-03-25 12:57:48,385 | INFO     | zombie collector waiting for pid 3816053
[2026-03-25 13:58:50] 2026-03-25 12:57:48,385 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 13:58:50] 2026-03-25 12:57:48,385 | INFO     | collected zombie processes
[2026-03-25 13:58:50] 2026-03-25 12:57:48,385 | INFO     | will attempt to kill all subprocesses of pid=3816053
[2026-03-25 13:58:50] 2026-03-25 12:57:48,710 | INFO     | process IDs to be killed: [3816053] (in reverse order)
[2026-03-25 13:58:50] 2026-03-25 12:57:48,850 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 13:58:50] 2026-03-25 12:57:48,850 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 13:58:50] 2026-03-25 12:57:48,872 | INFO     | did not find any defunct processes belonging to 3816053
[2026-03-25 13:58:50] 2026-03-25 12:57:48,893 | INFO     | did not find any defunct processes belonging to 3816053
[2026-03-25 13:58:50] 2026-03-25 12:57:48,894 | INFO     | ready for new job
[2026-03-25 13:58:50] 2026-03-25 12:57:48,894 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 13:58:50] 2026-03-25 12:57:48,895 | INFO     | **************************************
[2026-03-25 13:58:50] 2026-03-25 12:57:48,895 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 13:58:50] 2026-03-25 12:57:48,895 | INFO     | **************************************
[2026-03-25 13:58:50] 2026-03-25 12:57:48,895 | INFO     | 
[2026-03-25 13:58:50] 2026-03-25 12:57:48,900 | INFO     | architecture information:
[2026-03-25 13:58:50] 2026-03-25 12:57:48,900 | INFO     | executing command: cat /etc/os-release
[2026-03-25 13:58:50] 2026-03-25 12:57:48,911 | INFO     | cat /etc/os-release:
[2026-03-25 13:58:50] NAME="CentOS Linux"
[2026-03-25 13:58:50] VERSION="7 (Core)"
[2026-03-25 13:58:50] ID="centos"
[2026-03-25 13:58:50] ID_LIKE="rhel fedora"
[2026-03-25 13:58:50] VERSION_ID="7"
[2026-03-25 13:58:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 13:58:50] ANSI_COLOR="0;31"
[2026-03-25 13:58:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 13:58:50] HOME_URL="https://www.centos.org/"
[2026-03-25 13:58:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 13:58:50] 
[2026-03-25 13:58:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 13:58:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 13:58:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 13:58:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 13:58:50] 
[2026-03-25 13:58:50] 2026-03-25 12:57:48,912 | INFO     | **************************************
[2026-03-25 13:58:50] 2026-03-25 12:57:49,414 | INFO     | executing command: df -mP /var/lib/boinc/var/slot240/slots/1
[2026-03-25 13:58:50] 2026-03-25 12:57:49,428 | INFO     | sufficient remaining disk space (20257439744 B)
[2026-03-25 13:58:50] 2026-03-25 12:57:49,428 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 13:58:50] 2026-03-25 12:57:49,429 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 13:58:50] 2026-03-25 12:57:49,429 | INFO     | update_server=False
[2026-03-25 13:58:50] 2026-03-25 12:57:49,429 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 13:58:50] 2026-03-25 12:57:49,494 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 13:58:50] 2026-03-25 12:57:49,639 | INFO     | all payload control threads have been joined
[2026-03-25 13:58:50] 2026-03-25 12:57:49,746 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 13:58:50] 2026-03-25 12:57:49,746 | INFO     | aborting loop
[2026-03-25 13:58:50] 2026-03-25 12:57:50,250 | INFO     | all job control threads have been joined
[2026-03-25 13:58:50] 2026-03-25 12:57:50,434 | INFO     | [job] retrieve thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:50,442 | INFO     | all data control threads have been joined
[2026-03-25 13:58:50] 2026-03-25 12:57:50,458 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:50,644 | INFO     | [payload] validate_post thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:50,645 | INFO     | [payload] control thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:50,752 | INFO     | [job] job monitor thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:51,176 | INFO     | [job] validate thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:51,255 | INFO     | [job] control thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:51,369 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:51,424 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:51,434 | INFO     | [payload] failed_post thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:51,447 | INFO     | [data] control thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:51,499 | INFO     | [data] copytool_out thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:51,668 | INFO     | [data] copytool_in thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:51,703 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:52,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 13:58:50] 2026-03-25 12:57:52,395 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 13:58:50] 2026-03-25 12:57:53,370 | INFO     | [job] queue monitor thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:57:56,401 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 13:58:50] 2026-03-25 12:58:20,716 | INFO     | PID=3810306 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-25 13:58:50] 2026-03-25 12:58:20,716 | INFO     | .. there are 11 such processes running
[2026-03-25 13:58:50] 2026-03-25 12:58:20,717 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 13:58:50] 2026-03-25 12:58:20,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 13:58:50] 2026-03-25 12:58:20,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 13:58:50] 2026-03-25 12:58:36,009 [wrapper] supervise_pilot (15 min periods counter: 4)
[2026-03-25 13:58:50] 2026-03-25 12:58:44,566 | INFO     | [monitor] cgroup control has ended
[2026-03-25 13:58:50] 2026-03-25 12:58:45,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22469150111552)>', '<ExcThread(monitor, started 22468840363776)>']
[2026-03-25 13:58:50] 2026-03-25 12:58:45,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 13:58:50] 2026-03-25 12:58:45,842 | INFO     | [monitor] control thread has ended
[2026-03-25 13:58:50] 2026-03-25 12:58:50,607 | INFO     | all workflow threads have been joined
[2026-03-25 13:58:50] 2026-03-25 12:58:50,608 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 13:58:50] 2026-03-25 12:58:50,608 | INFO     | traces error code: 0
[2026-03-25 13:58:50] 2026-03-25 12:58:50,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 13:58:50] 2026-03-25 12:58:50,744 [wrapper] ==== pilot stdout END ====
[2026-03-25 13:58:50] 2026-03-25 12:58:50,749 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 13:58:50] 2026-03-25 12:58:50,750 [wrapper] pilotpid: 3810306
[2026-03-25 13:58:50] 2026-03-25 12:58:50,751 [wrapper] Pilot exit status: 0
[2026-03-25 13:58:50] 2026-03-25 12:58:50,756 [wrapper] pandaids: 7063737714
[2026-03-25 13:58:50] 2026-03-25 12:58:50,860 [wrapper] cleanup supervisor_pilot 3972333 3810307
[2026-03-25 13:58:50] 2026-03-25 12:58:50,862 [wrapper] Test setup, not cleaning
[2026-03-25 13:58:50] 2026-03-25 12:58:50,864 [wrapper] apfmon messages muted
[2026-03-25 13:58:50] 2026-03-25 12:58:50,866 [wrapper] ==== wrapper stdout END ====
[2026-03-25 13:58:50] 2026-03-25 12:58:50,867 [wrapper] ==== wrapper stderr END ====
[2026-03-25 13:58:50]  *** Error codes and diagnostics ***
[2026-03-25 13:58:50]     "exeErrorCode": 0,
[2026-03-25 13:58:50]     "exeErrorDiag": "",
[2026-03-25 13:58:50]     "pilotErrorCode": 0,
[2026-03-25 13:58:50]     "pilotErrorDiag": "",
[2026-03-25 13:58:50]  *** Listing of results directory ***
[2026-03-25 13:58:50] total 457044
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc    585013 Mar 24 02:39 pilot3.tar.gz
[2026-03-25 13:58:50] -rwx------. 1 boinc boinc     36322 Mar 24 02:40 runpilot2-wrapper.sh
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc      5111 Mar 24 02:41 queuedata.json
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc       100 Mar 25 13:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 13:58:50] -rwxr-xr-x. 1 boinc boinc      7986 Mar 25 13:13 run_atlas
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc       105 Mar 25 13:13 job.xml
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc      6711 Mar 25 13:13 init_data.xml
[2026-03-25 13:58:50] -rw-r--r--. 2 boinc boinc 250590516 Mar 25 13:13 EVNT.49130961._000001.pool.root.1
[2026-03-25 13:58:50] -rw-r--r--. 2 boinc boinc     15845 Mar 25 13:13 start_atlas.sh
[2026-03-25 13:58:50] drwxrwx--x. 2 boinc boinc      4096 Mar 25 13:13 shared
[2026-03-25 13:58:50] -rw-r--r--. 2 boinc boinc    597546 Mar 25 13:13 input.tar.gz
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc         0 Mar 25 13:13 boinc_lockfile
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc      2616 Mar 25 13:13 pandaJob.out
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc   1011166 Mar 25 13:13 agis_schedconf.cvmfs.json
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc   1511579 Mar 25 13:13 agis_ddmendpoints.agis.ALL.json
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc       445 Mar 25 13:13 workernode_map.json
[2026-03-25 13:58:50] drwx------. 5 boinc boinc      4096 Mar 25 13:13 pilot3
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc 211941598 Mar 25 13:57 HITS.49192262._000036.pool.root.1
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc        95 Mar 25 13:57 pilot_heartbeat.json
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc       529 Mar 25 13:57 boinc_task_state.xml
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc      1028 Mar 25 13:57 memory_monitor_summary.json
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc    348871 Mar 25 13:57 log.49192262._000036.job.log.tgz.1
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc      6344 Mar 25 13:57 heartbeat.json
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc      8192 Mar 25 13:58 boinc_mmap_file
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc        27 Mar 25 13:58 wrapper_checkpoint.txt
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc      4830 Mar 25 13:58 pilotlog.txt
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc    416848 Mar 25 13:58 log.49192262._000036.job.log.1
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc       357 Mar 25 13:58 output.list
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc       620 Mar 25 13:58 runtime_log
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc    788480 Mar 25 13:58 result.tar.gz
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc      9223 Mar 25 13:58 runtime_log.err
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc       662 Mar 25 13:58 SzoLDmov5O9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYqBMDmiQNlMo.diag
[2026-03-25 13:58:50] -rw-r--r--. 1 boinc boinc     22762 Mar 25 13:58 stderr.txt
[2026-03-25 13:58:50] HITS file was successfully produced:
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc 211941598 Mar 25 13:57 shared/HITS.pool.root.1
[2026-03-25 13:58:50]  *** Contents of shared directory: ***
[2026-03-25 13:58:50] total 453076
[2026-03-25 13:58:50] -rw-r--r--. 2 boinc boinc 250590516 Mar 25 13:13 ATLAS.root_0
[2026-03-25 13:58:50] -rw-r--r--. 2 boinc boinc     15845 Mar 25 13:13 start_atlas.sh
[2026-03-25 13:58:50] -rw-r--r--. 2 boinc boinc    597546 Mar 25 13:13 input.tar.gz
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc 211941598 Mar 25 13:57 HITS.pool.root.1
[2026-03-25 13:58:50] -rw-------. 1 boinc boinc    788480 Mar 25 13:58 result.tar.gz
13:58:52 (3805754): run_atlas exited; CPU time 28298.192716
13:58:52 (3805754): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN