Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-25 05:35:32 (13800): vboxwrapper version 26210
2026-03-25 05:35:32 (13800): BOINC client version: 8.2.8
2026-03-25 05:35:33 (13800): Detected: VirtualBox VboxManage Interface (Version: 7.2.6)
2026-03-25 05:35:33 (13800): Successfully copied 'init_data.xml' to the shared directory.
2026-03-25 05:35:33 (13800): Create VM. (boinc_f91b9ade342ec01d, slot#0)
2026-03-25 05:35:34 (13800): Setting Memory Size for VM. (4800MB)
2026-03-25 05:35:34 (13800): Setting CPU Count for VM. (8)
2026-03-25 05:35:34 (13800): Setting Chipset Options for VM.
2026-03-25 05:35:34 (13800): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-25 05:35:35 (13800): Setting Boot Options for VM.
2026-03-25 05:35:35 (13800): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-25 05:35:36 (13800): Enabling VM Network Access.
2026-03-25 05:35:36 (13800): Disabling USB Support for VM.
2026-03-25 05:35:36 (13800): Disabling COM Port Support for VM.
2026-03-25 05:35:36 (13800): Disabling LPT Port Support for VM.
2026-03-25 05:35:37 (13800): Disabling Audio Support for VM.
2026-03-25 05:35:37 (13800): Disabling Clipboard Support for VM.
2026-03-25 05:35:37 (13800): Disabling Drag and Drop Support for VM.
2026-03-25 05:35:37 (13800): Adding storage controller(s) to VM.
2026-03-25 05:35:37 (13800): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-25 05:35:38 (13800): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-25 05:35:38 (13800): forwarding host port 57657 to guest port 80
2026-03-25 05:35:38 (13800): Enabling remote desktop for VM.
2026-03-25 05:35:39 (13800): Required extension pack not installed, remote desktop not enabled.
2026-03-25 05:35:39 (13800): Enabling shared directory for VM.
2026-03-25 05:35:39 (13800): Starting VM using VBoxManage interface. (boinc_f91b9ade342ec01d, slot#0)
2026-03-25 05:35:41 (13800): Successfully started VM. (PID = '14310')
2026-03-25 05:35:41 (13800): Reporting VM Process ID to BOINC.
2026-03-25 05:35:41 (13800): Guest Log: BIOS: VirtualBox 7.2.6
2026-03-25 05:35:41 (13800): Guest Log: CPUID EDX: 0x178bfbff
2026-03-25 05:35:41 (13800): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-25 05:35:41 (13800): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-25 05:35:41 (13800): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-25 05:35:41 (13800): Detected: Web Application Enabled (http://localhost:57657)
2026-03-25 05:35:41 (13800): Preference change detected
2026-03-25 05:35:41 (13800): Setting CPU throttle for VM. (100%)
2026-03-25 05:35:41 (13800): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-25 05:35:43 (13800): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-25 05:35:43 (13800): Guest Log: BIOS: Booting from Hard Disk...
2026-03-25 05:35:51 (13800): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-25 05:35:51 (13800): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-25 05:35:51 (13800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-25 05:36:02 (13800): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-25 05:36:02 (13800): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-03-25 05:36:20 (13800): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-25 05:36:20 (13800): Guest Log: 00:00:00.000336 main     Log opened 2026-03-25T04:36:19.076770000Z
2026-03-25 05:36:20 (13800): Guest Log: 00:00:00.000552 main     OS Product: Linux
2026-03-25 05:36:20 (13800): Guest Log: 00:00:00.000624 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-25 05:36:20 (13800): Guest Log: 00:00:00.000693 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-25 05:36:20 (13800): Guest Log: 00:00:00.000754 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-25 05:36:20 (13800): Guest Log: 00:00:00.000756 main     Process ID: 1369
2026-03-25 05:36:20 (13800): Guest Log: 00:00:00.000757 main     Package type: LINUX_64BITS_GENERIC
2026-03-25 05:36:20 (13800): Guest Log: 00:00:00.008532 main     5.2.32 r132073 started. Verbose level = 0
2026-03-25 05:36:21 (13800): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-25 05:36:21 (13800): Guest Log: [INFO] Mounting shared directory
2026-03-25 05:36:21 (13800): Guest Log: [INFO] Checking for init_data.xml
2026-03-25 05:36:25 (13800): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-25 05:36:26 (13800): Guest Log: [INFO] Detected branch: prod
2026-03-25 05:36:26 (13800): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-25 05:36:26 (13800): Guest Log: Copying input files
2026-03-25 05:36:29 (13800): Guest Log: Copied input files into RunAtlas.
2026-03-25 05:36:29 (13800): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-25 05:36:29 (13800): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-25 05:36:29 (13800): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-25 05:36:29 (13800): Guest Log: Further information can be found at the LHC@home message board.
2026-03-25 05:36:40 (13800): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-25 05:36:40 (13800): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-25 05:36:40 (13800): Guest Log: 2.6.3.0 1643 0 30156 157670 3 1 3117755 4096001 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-03-25 05:36:43 (13800): Guest Log: copied the webapp to /var/www
2026-03-25 05:36:43 (13800): Guest Log: ATHENA_PROC_NUMBER=8
2026-03-25 05:36:43 (13800): Guest Log: ATHENA_CORE_NUMBER=8
2026-03-25 05:36:43 (13800): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-25 05:36:43 (13800): Guest Log:  *** Starting ATLAS job. (PandaID=7063690897 taskID=49178522) ***
2026-03-25 06:08:41 (13800): Guest Log:  *** Job finished ***
2026-03-25 06:08:41 (13800): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:30,578 | INFO     | all workflow threads have been joined
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:30,579 | INFO     | end of generic workflow (traces error code: 0)
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:30,579 | INFO     | traces error code: 0
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:30,579 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,827 | INFO     | PID=6076 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,829 | INFO     | found 0 job(s) in 20 queues
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,829 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,829 | INFO     | [monitor] control thread has ended
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,969 [wrapper] ==== pilot stdout END ====
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,977 [wrapper] ==== wrapper stdout RESUME ====
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,986 [wrapper] pilotpid: 6076
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:38,995 [wrapper] Pilot exit status: 0
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:39,050 [wrapper] pandaids: 7063690897
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:39,113 [wrapper] cleanup supervisor_pilot 15499 6077
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:39,127 [wrapper] Test setup, not cleaning
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:39,136 [wrapper] apfmon messages muted
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:39,145 [wrapper] ==== wrapper stdout END ====
2026-03-25 06:08:41 (13800): Guest Log: 2026-03-25 05:08:39,154 [wrapper] ==== wrapper stderr END ====
2026-03-25 06:08:41 (13800): Guest Log:  *** Error codes and diagnostics ***
2026-03-25 06:08:41 (13800): Guest Log:     "exeErrorCode": 0,
2026-03-25 06:08:41 (13800): Guest Log:     "exeErrorDiag": "",
2026-03-25 06:08:41 (13800): Guest Log:     "pilotErrorCode": 1305,
2026-03-25 06:08:41 (13800): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
2026-03-25 06:08:41 (13800): Guest Log:  *** Listing of results directory ***
2026-03-25 06:08:41 (13800): Guest Log: total 4836
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 atlas atlas  585013 Mar 24 01:39 pilot3.tar.gz
2026-03-25 06:08:41 (13800): Guest Log: -rwx------. 1 atlas atlas   36322 Mar 24 01:39 runpilot2-wrapper.sh
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Mar 24 01:40 queuedata.json
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 atlas atlas  597553 Mar 25 04:36 input.tar.gz
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 atlas atlas   15845 Mar 25 04:36 start_atlas.sh
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 atlas atlas    6160 Mar 25 04:36 init_data.xml
2026-03-25 06:08:41 (13800): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Mar 25 04:36 EVNT.49128996._000005.pool.root.1 -> /data/./ATLAS.root_0
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 atlas atlas    2647 Mar 25 04:36 pandaJob.out
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas 1010836 Mar 25 04:37 agis_schedconf.cvmfs.json
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas 1511579 Mar 25 04:37 agis_ddmendpoints.agis.ALL.json
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas     428 Mar 25 04:38 workernode_map.json
2026-03-25 06:08:41 (13800): Guest Log: drwx------. 5 atlas atlas    4096 Mar 25 04:38 pilot3
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas    1028 Mar 25 05:06 memory_monitor_summary.json
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas  253796 Mar 25 05:06 log.49178522._000290.job.log.tgz.1
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas    7257 Mar 25 05:08 heartbeat.json
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas      95 Mar 25 05:08 pilot_heartbeat.json
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas     744 Mar 25 05:08 pilotlog.txt
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas  291617 Mar 25 05:08 log.49178522._000290.job.log.1
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas     188 Mar 25 05:08 output.list
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 atlas atlas     620 Mar 25 05:08 runtime_log
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas  563200 Mar 25 05:08 result.tar.gz
2026-03-25 06:08:41 (13800): Guest Log: -rw-------. 1 atlas atlas     654 Mar 25 05:08 wPAMDmQv5O9n9Rq4apOajLDm4fhM0noT9bVoINGKDmcLFKDmk3Knmn.diag
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 atlas atlas    8605 Mar 25 05:08 runtime_log.err
2026-03-25 06:08:41 (13800): Guest Log: Looking for outputfile HITS.49178522._000290.pool.root.1
2026-03-25 06:08:41 (13800): Guest Log: No HITS file was produced
2026-03-25 06:08:41 (13800): Guest Log: Successfully finished the ATLAS job!
2026-03-25 06:08:41 (13800): Guest Log: Copying the results back to the shared directory!
2026-03-25 06:08:41 (13800): Guest Log:  *** Contents of shared directory: ***
2026-03-25 06:08:41 (13800): Guest Log: total 232656
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 root root 237050044 Mar 25 04:35 ATLAS.root_0
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 root root      6160 Mar 25 04:35 init_data.xml
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 root root    597553 Mar 25 04:35 input.tar.gz
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 root root    563200 Mar 25  2026 result.tar.gz
2026-03-25 06:08:41 (13800): Guest Log: -rw-r--r--. 1 root root     15845 Mar 25 04:35 start_atlas.sh
2026-03-25 06:08:41 (13800): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-25 06:08:42 (13800): VM Completion File Detected.
2026-03-25 06:08:42 (13800): Powering off VM.
2026-03-25 06:08:43 (13800): Successfully stopped VM.
2026-03-25 06:08:43 (13800): Deregistering VM. (boinc_f91b9ade342ec01d, slot#0)
2026-03-25 06:08:43 (13800): Removing network bandwidth throttle group from VM.
2026-03-25 06:08:43 (13800): Removing VM from VirtualBox.
2026-03-25 06:08:48 (13800): called boinc_finish(0)

</stderr_txt>
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