Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:43:25 (937262): wrapper (7.7.26015): starting
20:43:25 (937262): wrapper: running run_atlas (--nthreads 8)
[2026-03-23 20:43:25] Arguments: --nthreads 8
[2026-03-23 20:43:25] Threads: 8
[2026-03-23 20:43:25] Checking for CVMFS
[2026-03-23 20:43:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 20:43:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 20:43:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 20:43:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 20:43:27] 2.13.3.0 7542 128733 246668 157625 2 590 26134549 40960000 23220 16776704 0 392177839 99.661 376149124 36963 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-23 20:43:27] CVMFS is ok
[2026-03-23 20:43:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 20:43:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 20:43:27] Further information can be found at the LHC@home message board.
[2026-03-23 20:43:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 20:43:27] Checking for apptainer binary...
[2026-03-23 20:43:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 20:43:27] Running /usr/bin/apptainer --version
[2026-03-23 20:43:27] apptainer version 1.4.5-2.el9
[2026-03-23 20:43:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 20:43:27] c-212-6.aglt2.org
[2026-03-23 20:43:27] apptainer works
[2026-03-23 20:43:27] Set ATHENA_PROC_NUMBER=8
[2026-03-23 20:43:27] Set ATHENA_CORE_NUMBER=8
[2026-03-23 20:43:27] Starting ATLAS job with PandaID=7056217039
[2026-03-23 20:43:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:00:09 (937262): BOINC client no longer exists - exiting
22:00:09 (937262): timer handler: client dead, exiting
22:10:49 (1378392): wrapper (7.7.26015): starting
22:10:49 (1378392): wrapper: running run_atlas (--nthreads 9)
[2026-03-23 22:10:49] Arguments: --nthreads 9
[2026-03-23 22:10:49] Threads: 9
[2026-03-23 22:10:49] This job has been restarted, cleaning up previous attempt
[2026-03-23 22:10:49] Checking for CVMFS
[2026-03-23 22:10:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 22:10:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 22:10:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 22:10:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 22:10:51] 2.13.3.0 7542 128820 248592 157626 3 625 28465892 40960000 20700 16776704 0 392602328 99.660 376796103 36954 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-23 22:10:51] CVMFS is ok
[2026-03-23 22:10:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 22:10:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 22:10:51] Further information can be found at the LHC@home message board.
[2026-03-23 22:10:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 22:10:51] Checking for apptainer binary...
[2026-03-23 22:10:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 22:10:51] Running /usr/bin/apptainer --version
[2026-03-23 22:10:51] apptainer version 1.4.5-2.el9
[2026-03-23 22:10:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 22:10:51] c-212-6.aglt2.org
[2026-03-23 22:10:51] apptainer works
[2026-03-23 22:10:51] Set ATHENA_PROC_NUMBER=9
[2026-03-23 22:10:51] Set ATHENA_CORE_NUMBER=9
[2026-03-23 22:10:51] Starting ATLAS job with PandaID=7056217039
[2026-03-23 22:10:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 04:19:32]  *** The last 200 lines of the pilot log: ***
[2026-03-24 04:19:32] 2026-03-24 07:57:42,783 | INFO     | extracted standard memory fields from prmon json
[2026-03-24 04:19:32] 2026-03-24 07:57:42,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-24 04:19:32] 2026-03-24 07:57:42,783 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-24 04:19:32] 2026-03-24 07:57:42,783 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-24 04:19:32] 2026-03-24 07:57:42,797 | INFO     | fitting pss+swap vs Time
[2026-03-24 04:19:32] 2026-03-24 07:57:42,798 | INFO     | sum of square deviations: 12295292737.988249
[2026-03-24 04:19:32] 2026-03-24 07:57:42,815 | INFO     | sum of deviations: 5617246206.19939
[2026-03-24 04:19:32] 2026-03-24 07:57:42,815 | INFO     | mean x: 1774328671.005865
[2026-03-24 04:19:32] 2026-03-24 07:57:42,815 | INFO     | mean y: 2532261.900293255
[2026-03-24 04:19:32] 2026-03-24 07:57:42,815 | INFO     | intersect: -808090242.8379935
[2026-03-24 04:19:32] 2026-03-24 07:57:42,815 | INFO     | chi2: 2.7936593137495795
[2026-03-24 04:19:32] 2026-03-24 07:57:42,816 | INFO     | sum of square deviations: 11762334517.988163
[2026-03-24 04:19:32] 2026-03-24 07:57:42,826 | INFO     | sum of deviations: 48415570681.14874
[2026-03-24 04:19:32] 2026-03-24 07:57:42,827 | INFO     | mean x: 1774328518.5059524
[2026-03-24 04:19:32] 2026-03-24 07:57:42,827 | INFO     | mean y: 2544396.675595238
[2026-03-24 04:19:32] 2026-03-24 07:57:42,827 | INFO     | intersect: -7300863584.786586
[2026-03-24 04:19:32] 2026-03-24 07:57:42,827 | INFO     | chi2: 1.3874109768376537
[2026-03-24 04:19:32] 2026-03-24 07:57:42,827 | INFO     | current chi2=1.3874109768376537 (change=50.33714490492023 %)
[2026-03-24 04:19:32] 2026-03-24 07:57:42,828 | INFO     | sum of square deviations: 11245004497.987915
[2026-03-24 04:19:32] 2026-03-24 07:57:42,835 | INFO     | sum of deviations: 47639883395.99995
[2026-03-24 04:19:32] 2026-03-24 07:57:42,835 | INFO     | mean x: 1774328366.0060422
[2026-03-24 04:19:32] 2026-03-24 07:57:42,836 | INFO     | mean y: 2544168.0
[2026-03-24 04:19:32] 2026-03-24 07:57:42,836 | INFO     | intersect: -7514464515.977656
[2026-03-24 04:19:32] 2026-03-24 07:57:42,836 | INFO     | chi2: 1.3876931839384117
[2026-03-24 04:19:32] 2026-03-24 07:57:42,836 | INFO     | current chi2=1.3876931839384117 (change=-0.020340555572165835 %)
[2026-03-24 04:19:32] 2026-03-24 07:57:42,836 | INFO     | right removable region: 330
[2026-03-24 04:19:32] 2026-03-24 07:57:42,837 | INFO     | sum of square deviations: 11762333297.988165
[2026-03-24 04:19:32] 2026-03-24 07:57:42,843 | INFO     | sum of deviations: -47593059447.74405
[2026-03-24 04:19:32] 2026-03-24 07:57:42,844 | INFO     | mean x: 1774328823.5059524
[2026-03-24 04:19:32] 2026-03-24 07:57:42,844 | INFO     | mean y: 2547395.6220238097
[2026-03-24 04:19:32] 2026-03-24 07:57:42,844 | INFO     | intersect: 7181882909.895215
[2026-03-24 04:19:32] 2026-03-24 07:57:42,844 | INFO     | chi2: 1.4382305188215239
[2026-03-24 04:19:32] 2026-03-24 07:57:42,844 | INFO     | current chi2=1.4382305188215239 (change=48.518041847731006 %)
[2026-03-24 04:19:32] 2026-03-24 07:57:42,845 | INFO     | sum of square deviations: 11245002057.987915
[2026-03-24 04:19:32] 2026-03-24 07:57:42,851 | INFO     | sum of deviations: -50068141175.21753
[2026-03-24 04:19:32] 2026-03-24 07:57:42,852 | INFO     | mean x: 1774328976.0060422
[2026-03-24 04:19:32] 2026-03-24 07:57:42,852 | INFO     | mean y: 2548121.108761329
[2026-03-24 04:19:32] 2026-03-24 07:57:42,852 | INFO     | intersect: 7902711518.486164
[2026-03-24 04:19:32] 2026-03-24 07:57:42,852 | INFO     | chi2: 1.4337980245581565
[2026-03-24 04:19:32] 2026-03-24 07:57:42,852 | INFO     | current chi2=1.4337980245581565 (change=0.30819080845254854 %)
[2026-03-24 04:19:32] 2026-03-24 07:57:42,852 | INFO     | left removable region: 20
[2026-03-24 04:19:32] 2026-03-24 07:57:42,853 | INFO     | sum of square deviations: 9237625007.487156
[2026-03-24 04:19:32] 2026-03-24 07:57:42,859 | INFO     | sum of deviations: -7991962830.948383
[2026-03-24 04:19:32] 2026-03-24 07:57:42,859 | INFO     | mean x: 1774328945.5064516
[2026-03-24 04:19:32] 2026-03-24 07:57:42,859 | INFO     | mean y: 2561007.9741935483
[2026-03-24 04:19:32] 2026-03-24 07:57:42,860 | INFO     | intersect: 1537627756.285596
[2026-03-24 04:19:32] 2026-03-24 07:57:42,860 | INFO     | chi2: 0.00699309216845558
[2026-03-24 04:19:32] 2026-03-24 07:57:42,860 | INFO     | current memory leak: -0.87 B/s (using 310 data points, chi2=0.01)
[2026-03-24 04:19:32] 2026-03-24 07:57:42,861 | INFO     | could have reported an average CPU frequency of 3178 MHz (15 samples)
[2026-03-24 04:19:32] 2026-03-24 07:57:42,861 | INFO     | ..............................
[2026-03-24 04:19:32] 2026-03-24 07:57:42,861 | INFO     | . Timing measurements:
[2026-03-24 04:19:32] 2026-03-24 07:57:42,861 | INFO     | . get job = 0 s
[2026-03-24 04:19:32] 2026-03-24 07:57:42,861 | INFO     | . initial setup = 1 s
[2026-03-24 04:19:32] 2026-03-24 07:57:42,861 | INFO     | . payload setup = 15 s
[2026-03-24 04:19:32] 2026-03-24 07:57:42,861 | INFO     | . stage-in = 0 s
[2026-03-24 04:19:32] 2026-03-24 07:57:42,861 | INFO     | . payload execution = 20754 s
[2026-03-24 04:19:32] 2026-03-24 07:57:42,861 | INFO     | . stage-out = 6 s
[2026-03-24 04:19:32] 2026-03-24 07:57:42,862 | INFO     | . log creation = 0 s
[2026-03-24 04:19:32] 2026-03-24 07:57:42,862 | INFO     | ..............................
[2026-03-24 04:19:32] 2026-03-24 07:57:43,337 | INFO     | time since job start (20795s) is within the limit (345600.0s)
[2026-03-24 04:19:32] 2026-03-24 07:57:44,166 | INFO     | 
[2026-03-24 04:19:32] 2026-03-24 07:57:44,166 | INFO     | job summary report
[2026-03-24 04:19:32] 2026-03-24 07:57:44,166 | INFO     | --------------------------------------------------
[2026-03-24 04:19:32] 2026-03-24 07:57:44,166 | INFO     | PanDA job id: 7056217039
[2026-03-24 04:19:32] 2026-03-24 07:57:44,166 | INFO     | task id: 48967085
[2026-03-24 04:19:32] 2026-03-24 07:57:44,166 | INFO     | errors: (none)
[2026-03-24 04:19:32] 2026-03-24 07:57:44,166 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | pilot state: finished 
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | transexitcode: 0
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | exeerrorcode: 0
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | exeerrordiag: 
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | exitcode: 0
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | exitmsg: OK
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | cpuconsumptiontime: 42218 s
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | nevents: 400
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | neventsw: 0
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | pid: 1409648
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | pgrp: 1409648
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | corecount: 9
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | event service: False
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | sizes: {0: 2279753, 1: 2280270, 11: 2280270, 20773: 2313662, 20774: 2313661, 20782: 2322715, 20783: 2322899, 20784: 2323093}
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | --------------------------------------------------
[2026-03-24 04:19:32] 2026-03-24 07:57:44,167 | INFO     | 
[2026-03-24 04:19:32] 2026-03-24 07:57:44,168 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-24 04:19:32] 2026-03-24 07:57:44,345 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,347 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-24 04:19:32] 2026-03-24 07:57:44,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,347 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-24 04:19:32] 2026-03-24 07:57:44,347 | INFO     | job 7056217039 has completed (purged errors)
[2026-03-24 04:19:32] 2026-03-24 07:57:44,347 | INFO     | overall cleanup function is called
[2026-03-24 04:19:32] 2026-03-24 07:57:45,386 | INFO     | --- collectZombieJob: --- 10, [1409648]
[2026-03-24 04:19:32] 2026-03-24 07:57:45,386 | INFO     | zombie collector waiting for pid 1409648
[2026-03-24 04:19:32] 2026-03-24 07:57:45,386 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-24 04:19:32] 2026-03-24 07:57:45,386 | INFO     | collected zombie processes
[2026-03-24 04:19:32] 2026-03-24 07:57:45,386 | INFO     | will attempt to kill all subprocesses of pid=1409648
[2026-03-24 04:19:32] 2026-03-24 07:57:46,604 | WARNING  | process 1409648 can no longer be monitored (due to stat problems) - aborting
[2026-03-24 04:19:32] 2026-03-24 07:57:49,640 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-24 04:19:32] 2026-03-24 07:57:49,755 | INFO     | process IDs to be killed: [1409648] (in reverse order)
[2026-03-24 04:19:32] 2026-03-24 07:57:50,221 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 04:19:32] 2026-03-24 07:57:50,221 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 04:19:32] 2026-03-24 07:57:50,289 | INFO     | did not find any defunct processes belonging to 1409648
[2026-03-24 04:19:32] 2026-03-24 07:57:50,370 | INFO     | did not find any defunct processes belonging to 1409648
[2026-03-24 04:19:32] 2026-03-24 07:57:50,370 | INFO     | ready for new job
[2026-03-24 04:19:32] 2026-03-24 07:57:50,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 04:19:32] 2026-03-24 07:57:50,377 | INFO     | **************************************
[2026-03-24 04:19:32] 2026-03-24 07:57:50,377 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 04:19:32] 2026-03-24 07:57:50,377 | INFO     | **************************************
[2026-03-24 04:19:32] 2026-03-24 07:57:50,377 | INFO     | 
[2026-03-24 04:19:32] 2026-03-24 07:57:50,399 | INFO     | architecture information:
[2026-03-24 04:19:32] 2026-03-24 07:57:50,407 | INFO     | executing command: cat /etc/os-release
[2026-03-24 04:19:32] 2026-03-24 07:57:50,534 | INFO     | cat /etc/os-release:
[2026-03-24 04:19:32] NAME="CentOS Linux"
[2026-03-24 04:19:32] VERSION="7 (Core)"
[2026-03-24 04:19:32] ID="centos"
[2026-03-24 04:19:32] ID_LIKE="rhel fedora"
[2026-03-24 04:19:32] VERSION_ID="7"
[2026-03-24 04:19:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 04:19:32] ANSI_COLOR="0;31"
[2026-03-24 04:19:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 04:19:32] HOME_URL="https://www.centos.org/"
[2026-03-24 04:19:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 04:19:32] 
[2026-03-24 04:19:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 04:19:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 04:19:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 04:19:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 04:19:32] 
[2026-03-24 04:19:32] 2026-03-24 07:57:50,535 | INFO     | **************************************
[2026-03-24 04:19:32] 2026-03-24 07:57:51,037 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-24 04:19:32] 2026-03-24 07:57:51,172 | INFO     | sufficient remaining disk space (124860235776 B)
[2026-03-24 04:19:32] 2026-03-24 07:57:51,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 04:19:32] 2026-03-24 07:57:51,173 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 04:19:32] 2026-03-24 07:57:51,173 | INFO     | update_server=False
[2026-03-24 04:19:32] 2026-03-24 07:57:51,173 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 04:19:32] 2026-03-24 07:57:51,532 | INFO     | number of running child processes to parent process 1409648: 1
[2026-03-24 04:19:32] 2026-03-24 07:57:51,555 | INFO     | maximum number of monitored processes: 6
[2026-03-24 04:19:32] 2026-03-24 07:57:51,555 | INFO     | aborting job monitoring since job object (job id=7056217039) has expired
[2026-03-24 04:19:32] 2026-03-24 07:57:51,555 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 04:19:32] 2026-03-24 07:57:51,555 | INFO     | will abort loop
[2026-03-24 04:19:32] 2026-03-24 07:57:51,921 | INFO     | all data control threads have been joined
[2026-03-24 04:19:32] 2026-03-24 07:57:52,022 | INFO     | all payload control threads have been joined
[2026-03-24 04:19:32] 2026-03-24 07:57:52,128 | INFO     | all job control threads have been joined
[2026-03-24 04:19:32] 2026-03-24 07:57:52,179 | INFO     | [job] retrieve thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:52,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 04:19:32] 2026-03-24 07:57:52,561 | INFO     | [job] job monitor thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:52,912 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:52,927 | INFO     | [data] control thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:53,028 | INFO     | [payload] control thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:53,043 | INFO     | [data] copytool_in thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:53,134 | INFO     | [job] control thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:53,227 | INFO     | [payload] failed_post thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:53,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 04:19:32] 2026-03-24 07:57:53,372 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 04:19:32] 2026-03-24 07:57:53,588 | INFO     | [payload] validate_post thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:53,652 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:53,652 | INFO     | [job] validate thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:53,653 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:53,653 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:54,236 | INFO     | [job] queue monitor thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:54,415 | INFO     | [data] copytool_out thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:57:57,387 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 04:19:32] 2026-03-24 07:58:21,730 | INFO     | PID=1397025 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-24 04:19:32] 2026-03-24 07:58:21,731 | INFO     | .. there are 32 such processes running
[2026-03-24 04:19:32] 2026-03-24 07:58:21,755 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 04:19:32] 2026-03-24 07:58:21,755 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 04:19:32] 2026-03-24 07:58:21,755 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 04:19:32] 2026-03-24 07:58:44,384 | INFO     | [monitor] cgroup control has ended
[2026-03-24 04:19:32] 2026-03-24 07:58:44,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139743955715904)>', '<ExcThread(monitor, started 139743597684480)>']
[2026-03-24 04:19:32] 2026-03-24 07:58:44,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 04:19:32] 2026-03-24 07:58:44,991 | INFO     | [monitor] control thread has ended
[2026-03-24 04:19:32] 2026-03-24 07:58:49,567 | INFO     | all workflow threads have been joined
[2026-03-24 04:19:32] 2026-03-24 07:58:49,567 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 04:19:32] 2026-03-24 07:58:49,567 | INFO     | traces error code: 0
[2026-03-24 04:19:32] 2026-03-24 07:58:49,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 04:19:32] 2026-03-24 07:58:52,926 [wrapper] ==== pilot stdout END ====
[2026-03-24 04:19:32] 2026-03-24 07:58:52,960 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 04:19:32] 2026-03-24 07:58:52,987 [wrapper] pilotpid: 1397025
[2026-03-24 04:19:32] 2026-03-24 07:58:52,998 [wrapper] Pilot exit status: 0
[2026-03-24 04:19:32] 2026-03-24 07:58:53,130 [wrapper] pandaids: 7056217039 7056217039
[2026-03-24 04:19:32] 2026-03-24 07:58:53,431 [wrapper] cleanup supervisor_pilot 2690072 1397026
[2026-03-24 04:19:32] 2026-03-24 07:58:53,434 [wrapper] Test setup, not cleaning
[2026-03-24 04:19:32] 2026-03-24 07:58:53,437 [wrapper] apfmon messages muted
[2026-03-24 04:19:32] 2026-03-24 07:58:53,440 [wrapper] ==== wrapper stdout END ====
[2026-03-24 04:19:32] 2026-03-24 07:58:53,458 [wrapper] ==== wrapper stderr END ====
[2026-03-24 04:19:32]  *** Error codes and diagnostics ***
[2026-03-24 04:19:32]     "exeErrorCode": 0,
[2026-03-24 04:19:32]     "exeErrorDiag": "",
[2026-03-24 04:19:32]     "pilotErrorCode": 0,
[2026-03-24 04:19:32]     "pilotErrorDiag": "",
[2026-03-24 04:19:32]  *** Listing of results directory ***
[2026-03-24 04:19:32] total 622076
[2026-03-24 04:19:32] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-24 04:19:32] -rwx------. 1 boincer umatlas     36322 Mar 15 18:03 runpilot2-wrapper.sh
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas      5111 Mar 15 18:03 queuedata.json
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas    585013 Mar 15 18:03 pilot3.tar.gz
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas       100 Mar 23 20:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 04:19:32] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 23 20:43 run_atlas
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas       105 Mar 23 20:43 job.xml
[2026-03-24 04:19:32] -rw-r--r--. 3 boincer umatlas 213474272 Mar 23 20:43 EVNT.48967083._000957.pool.root.1
[2026-03-24 04:19:32] -rw-r--r--. 3 boincer umatlas 213474272 Mar 23 20:43 ATLAS.root_0
[2026-03-24 04:19:32] -rw-r--r--. 2 boincer umatlas     15845 Mar 23 20:43 start_atlas.sh
[2026-03-24 04:19:32] drwxrwx--x. 2 boincer umatlas      4096 Mar 23 20:43 shared
[2026-03-24 04:19:32] -rw-r--r--. 2 boincer umatlas    597508 Mar 23 20:43 input.tar.gz
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas         0 Mar 23 20:43 boinc_lockfile
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas      2564 Mar 23 22:10 pandaJob.out
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas        57 Mar 23 22:10 setup.sh.local
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas   1010909 Mar 23 22:11 agis_schedconf.cvmfs.json
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas       429 Mar 23 22:11 workernode_map.json
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas 200067716 Mar 24 03:55 HITS.48967085._023926.pool.root.1
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas       530 Mar 24 03:55 boinc_task_state.xml
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas      1046 Mar 24 03:57 memory_monitor_summary.json
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas   1511579 Mar 24 03:57 agis_ddmendpoints.agis.ALL.json
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas    531638 Mar 24 03:57 log.48967085._023926.job.log.tgz.1
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas      6348 Mar 24 03:57 heartbeat.json
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas        96 Mar 24 03:58 pilot_heartbeat.json
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas      5111 Mar 24 03:58 pilotlog.txt
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas   2493983 Mar 24 03:58 log.48967085._023926.job.log.1
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas       357 Mar 24 03:58 output.list
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas       620 Mar 24 03:58 runtime_log
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas   3041280 Mar 24 03:58 result.tar.gz
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas      9422 Mar 24 03:58 runtime_log.err
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas       783 Mar 24 03:58 LNhNDmGj8L9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmiYvLDm9xUOQn.diag
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas      6959 Mar 24 04:19 init_data.xml
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas      8192 Mar 24 04:19 boinc_mmap_file
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas        28 Mar 24 04:19 wrapper_checkpoint.txt
[2026-03-24 04:19:32] -rw-r--r--. 1 boincer umatlas     23477 Mar 24 04:19 stderr.txt
[2026-03-24 04:19:32] HITS file was successfully produced:
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas 200067716 Mar 24 03:55 shared/HITS.pool.root.1
[2026-03-24 04:19:32]  *** Contents of shared directory: ***
[2026-03-24 04:19:32] total 407428
[2026-03-24 04:19:32] -rw-r--r--. 3 boincer umatlas 213474272 Mar 23 20:43 ATLAS.root_0
[2026-03-24 04:19:32] -rw-r--r--. 2 boincer umatlas     15845 Mar 23 20:43 start_atlas.sh
[2026-03-24 04:19:32] -rw-r--r--. 2 boincer umatlas    597508 Mar 23 20:43 input.tar.gz
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas 200067716 Mar 24 03:55 HITS.pool.root.1
[2026-03-24 04:19:32] -rw-------. 1 boincer umatlas   3041280 Mar 24 03:58 result.tar.gz
04:19:34 (1378392): run_atlas exited; CPU time 43145.556019
04:19:34 (1378392): called boinc_finish(0)

</stderr_txt>
]]>

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