Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:54:17 (5578): wrapper (7.7.26015): starting
20:54:17 (5578): wrapper: running run_atlas (--nthreads 8)
[2026-03-24 20:54:17] Arguments: --nthreads 8
[2026-03-24 20:54:17] Threads: 8
[2026-03-24 20:54:17] Checking for CVMFS
[2026-03-24 20:54:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 20:54:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 20:54:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 20:54:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 20:54:20] 2.11.2.0 20181 142423 140736 157655 3 264 18172089 25165824 4442 130560 156 39301618 99.833 31308057 1024 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-24 20:54:20] CVMFS is ok
[2026-03-24 20:54:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 20:54:20] Checking for apptainer binary...
[2026-03-24 20:54:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 20:54:20] Running /usr/bin/apptainer --version
[2026-03-24 20:54:20] apptainer version 1.3.2-1.el7
[2026-03-24 20:54:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 20:54:28] cg-vwn427.simple-grid.lan
[2026-03-24 20:54:28] apptainer works
[2026-03-24 20:54:28] Set ATHENA_PROC_NUMBER=8
[2026-03-24 20:54:28] Set ATHENA_CORE_NUMBER=8
[2026-03-24 20:54:28] Starting ATLAS job with PandaID=7056909755
[2026-03-24 20:54:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 08:42:34]  *** The last 200 lines of the pilot log: ***
[2026-03-25 08:42:34] 2026-03-25 07:41:44,907 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-7056909755/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 08:42:34] 2026-03-25 07:41:44,908 | INFO     | extracted standard info from prmon json
[2026-03-25 08:42:34] 2026-03-25 07:41:44,908 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 08:42:34] 2026-03-25 07:41:44,909 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 08:42:34] 2026-03-25 07:41:44,909 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 08:42:34] 2026-03-25 07:41:44,909 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 08:42:34] 2026-03-25 07:41:44,923 | INFO     | fitting pss+swap vs Time
[2026-03-25 08:42:34] 2026-03-25 07:41:44,924 | INFO     | sum of square deviations: 100542045128.0
[2026-03-25 08:42:34] 2026-03-25 07:41:44,938 | INFO     | sum of deviations: 390831090843.00006
[2026-03-25 08:42:34] 2026-03-25 07:41:44,939 | INFO     | mean x: 1774403558.0
[2026-03-25 08:42:34] 2026-03-25 07:41:44,939 | INFO     | mean y: 2496074.2430858808
[2026-03-25 08:42:34] 2026-03-25 07:41:44,939 | INFO     | intersect: -6895036965.650386
[2026-03-25 08:42:34] 2026-03-25 07:41:44,940 | INFO     | chi2: 5.22161666658768
[2026-03-25 08:42:34] 2026-03-25 07:41:44,944 | INFO     | sum of square deviations: 98362739150.5
[2026-03-25 08:42:34] 2026-03-25 07:41:44,962 | INFO     | sum of deviations: 433324603311.5
[2026-03-25 08:42:34] 2026-03-25 07:41:44,962 | INFO     | mean x: 1774403405.5
[2026-03-25 08:42:34] 2026-03-25 07:41:44,962 | INFO     | mean y: 2499028.8782991203
[2026-03-25 08:42:34] 2026-03-25 07:41:44,963 | INFO     | intersect: -7814410691.645215
[2026-03-25 08:42:34] 2026-03-25 07:41:44,964 | INFO     | chi2: 4.456940022661944
[2026-03-25 08:42:34] 2026-03-25 07:41:44,964 | INFO     | current chi2=4.456940022661944 (change=14.644442377755999 %)
[2026-03-25 08:42:34] 2026-03-25 07:41:44,964 | INFO     | right removable region: 681
[2026-03-25 08:42:34] 2026-03-25 07:41:44,965 | INFO     | sum of square deviations: 98362739150.5
[2026-03-25 08:42:34] 2026-03-25 07:41:44,979 | INFO     | sum of deviations: 166149815060.0
[2026-03-25 08:42:34] 2026-03-25 07:41:44,979 | INFO     | mean x: 1774403710.5
[2026-03-25 08:42:34] 2026-03-25 07:41:44,979 | INFO     | mean y: 2511788.340175953
[2026-03-25 08:42:34] 2026-03-25 07:41:44,979 | INFO     | intersect: -2994729350.8097615
[2026-03-25 08:42:34] 2026-03-25 07:41:44,980 | INFO     | chi2: 1.389057475498726
[2026-03-25 08:42:34] 2026-03-25 07:41:44,981 | INFO     | current chi2=1.389057475498726 (change=73.39794235783161 %)
[2026-03-25 08:42:34] 2026-03-25 07:41:44,982 | INFO     | sum of square deviations: 96215154698.0
[2026-03-25 08:42:34] 2026-03-25 07:41:44,995 | INFO     | sum of deviations: 101778804878.00017
[2026-03-25 08:42:34] 2026-03-25 07:41:44,996 | INFO     | mean x: 1774403863.0
[2026-03-25 08:42:34] 2026-03-25 07:41:44,996 | INFO     | mean y: 2516344.5494830133
[2026-03-25 08:42:34] 2026-03-25 07:41:44,996 | INFO     | intersect: -1874492585.2173862
[2026-03-25 08:42:34] 2026-03-25 07:41:44,997 | INFO     | chi2: 0.8867959848986404
[2026-03-25 08:42:34] 2026-03-25 07:41:44,997 | INFO     | current chi2=0.8867959848986404 (change=36.158438326661326 %)
[2026-03-25 08:42:34] 2026-03-25 07:41:44,998 | INFO     | sum of square deviations: 94099059208.0
[2026-03-25 08:42:34] 2026-03-25 07:41:45,015 | INFO     | sum of deviations: 85344787710.5
[2026-03-25 08:42:34] 2026-03-25 07:41:45,015 | INFO     | mean x: 1774404015.5
[2026-03-25 08:42:34] 2026-03-25 07:41:45,016 | INFO     | mean y: 2517531.605654762
[2026-03-25 08:42:34] 2026-03-25 07:41:45,016 | INFO     | intersect: -1606809227.7699761
[2026-03-25 08:42:34] 2026-03-25 07:41:45,017 | INFO     | chi2: 0.8599717531715912
[2026-03-25 08:42:34] 2026-03-25 07:41:45,017 | INFO     | current chi2=0.8599717531715912 (change=3.0248481255939774 %)
[2026-03-25 08:42:34] 2026-03-25 07:41:45,017 | INFO     | left removable region: 30
[2026-03-25 08:42:34] 2026-03-25 07:41:45,018 | INFO     | sum of square deviations: 85550069150.0
[2026-03-25 08:42:34] 2026-03-25 07:41:45,046 | INFO     | sum of deviations: 88668342851.0
[2026-03-25 08:42:34] 2026-03-25 07:41:45,047 | INFO     | mean x: 1774404290.0
[2026-03-25 08:42:34] 2026-03-25 07:41:45,047 | INFO     | mean y: 2523703.9185867896
[2026-03-25 08:42:34] 2026-03-25 07:41:45,047 | INFO     | intersect: -1836557076.5556304
[2026-03-25 08:42:34] 2026-03-25 07:41:45,048 | INFO     | chi2: 0.010079835308630818
[2026-03-25 08:42:34] 2026-03-25 07:41:45,048 | INFO     | current memory leak: 1.04 B/s (using 651 data points, chi2=0.01)
[2026-03-25 08:42:34] 2026-03-25 07:41:45,049 | INFO     | could have reported an average CPU frequency of 1999 MHz (27 samples)
[2026-03-25 08:42:34] 2026-03-25 07:41:45,049 | INFO     | ..............................
[2026-03-25 08:42:34] 2026-03-25 07:41:45,050 | INFO     | . Timing measurements:
[2026-03-25 08:42:34] 2026-03-25 07:41:45,054 | INFO     | . get job = 0 s
[2026-03-25 08:42:34] 2026-03-25 07:41:45,054 | INFO     | . initial setup = 83 s
[2026-03-25 08:42:34] 2026-03-25 07:41:45,054 | INFO     | . payload setup = 153 s
[2026-03-25 08:42:34] 2026-03-25 07:41:45,054 | INFO     | . stage-in = 0 s
[2026-03-25 08:42:34] 2026-03-25 07:41:45,054 | INFO     | . payload execution = 41976 s
[2026-03-25 08:42:34] 2026-03-25 07:41:45,055 | INFO     | . stage-out = 3 s
[2026-03-25 08:42:34] 2026-03-25 07:41:45,055 | INFO     | . log creation = 1 s
[2026-03-25 08:42:34] 2026-03-25 07:41:45,055 | INFO     | ..............................
[2026-03-25 08:42:34] 2026-03-25 07:41:45,176 | INFO     | 
[2026-03-25 08:42:34] 2026-03-25 07:41:45,176 | INFO     | job summary report
[2026-03-25 08:42:34] 2026-03-25 07:41:45,176 | INFO     | --------------------------------------------------
[2026-03-25 08:42:34] 2026-03-25 07:41:45,176 | INFO     | PanDA job id: 7056909755
[2026-03-25 08:42:34] 2026-03-25 07:41:45,176 | INFO     | task id: 49176974
[2026-03-25 08:42:34] 2026-03-25 07:41:45,177 | INFO     | errors: (none)
[2026-03-25 08:42:34] 2026-03-25 07:41:45,177 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 08:42:34] 2026-03-25 07:41:45,177 | INFO     | pilot state: finished 
[2026-03-25 08:42:34] 2026-03-25 07:41:45,177 | INFO     | transexitcode: 0
[2026-03-25 08:42:34] 2026-03-25 07:41:45,177 | INFO     | exeerrorcode: 0
[2026-03-25 08:42:34] 2026-03-25 07:41:45,177 | INFO     | exeerrordiag: 
[2026-03-25 08:42:34] 2026-03-25 07:41:45,177 | INFO     | exitcode: 0
[2026-03-25 08:42:34] 2026-03-25 07:41:45,177 | INFO     | exitmsg: OK
[2026-03-25 08:42:34] 2026-03-25 07:41:45,178 | INFO     | cpuconsumptiontime: 166451 s
[2026-03-25 08:42:34] 2026-03-25 07:41:45,178 | INFO     | nevents: 400
[2026-03-25 08:42:34] 2026-03-25 07:41:45,178 | INFO     | neventsw: 0
[2026-03-25 08:42:34] 2026-03-25 07:41:45,178 | INFO     | pid: 13852
[2026-03-25 08:42:34] 2026-03-25 07:41:45,178 | INFO     | pgrp: 13852
[2026-03-25 08:42:34] 2026-03-25 07:41:45,178 | INFO     | corecount: 8
[2026-03-25 08:42:34] 2026-03-25 07:41:45,178 | INFO     | event service: False
[2026-03-25 08:42:34] 2026-03-25 07:41:45,178 | INFO     | sizes: {0: 2279836, 1: 2280293, 2: 2280353, 12: 2280381, 42134: 2323506, 42138: 2332690, 42141: 2332828}
[2026-03-25 08:42:34] 2026-03-25 07:41:45,178 | INFO     | --------------------------------------------------
[2026-03-25 08:42:34] 2026-03-25 07:41:45,179 | INFO     | 
[2026-03-25 08:42:34] 2026-03-25 07:41:45,179 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2026-03-25 08:42:34] 2026-03-25 07:41:45,313 | INFO     | time since job start (42154s) is within the limit (345600.0s)
[2026-03-25 08:42:34] 2026-03-25 07:41:45,501 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,501 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,501 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,501 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,502 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,502 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,502 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,502 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,502 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,502 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,502 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,502 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,503 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,503 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,503 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,503 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,503 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,503 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 08:42:34] 2026-03-25 07:41:45,503 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,503 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 08:42:34] 2026-03-25 07:41:45,504 | INFO     | job 7056909755 has completed (purged errors)
[2026-03-25 08:42:34] 2026-03-25 07:41:45,504 | INFO     | overall cleanup function is called
[2026-03-25 08:42:34] 2026-03-25 07:41:46,512 | INFO     | --- collectZombieJob: --- 10, [13852]
[2026-03-25 08:42:34] 2026-03-25 07:41:46,513 | INFO     | zombie collector waiting for pid 13852
[2026-03-25 08:42:34] 2026-03-25 07:41:46,513 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 08:42:34] 2026-03-25 07:41:46,513 | INFO     | collected zombie processes
[2026-03-25 08:42:34] 2026-03-25 07:41:46,513 | INFO     | will attempt to kill all subprocesses of pid=13852
[2026-03-25 08:42:34] 2026-03-25 07:41:46,622 | INFO     | process IDs to be killed: [13852] (in reverse order)
[2026-03-25 08:42:34] 2026-03-25 07:41:47,301 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 08:42:34] 2026-03-25 07:41:47,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 08:42:34] 2026-03-25 07:41:47,305 | INFO     | did not find any defunct processes belonging to 13852
[2026-03-25 08:42:34] 2026-03-25 07:41:47,307 | INFO     | did not find any defunct processes belonging to 13852
[2026-03-25 08:42:34] 2026-03-25 07:41:47,308 | INFO     | ready for new job
[2026-03-25 08:42:34] 2026-03-25 07:41:47,308 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 08:42:34] 2026-03-25 07:41:47,311 | INFO     | **************************************
[2026-03-25 08:42:34] 2026-03-25 07:41:47,311 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 08:42:34] 2026-03-25 07:41:47,311 | INFO     | **************************************
[2026-03-25 08:42:34] 2026-03-25 07:41:47,312 | INFO     | 
[2026-03-25 08:42:34] 2026-03-25 07:41:47,312 | INFO     | pilot is running in a VM
[2026-03-25 08:42:34] 2026-03-25 07:41:47,312 | INFO     | architecture information:
[2026-03-25 08:42:34] 2026-03-25 07:41:47,336 | INFO     | executing command: cat /etc/os-release
[2026-03-25 08:42:34] 2026-03-25 07:41:47,461 | INFO     | cat /etc/os-release:
[2026-03-25 08:42:34] NAME="CentOS Linux"
[2026-03-25 08:42:34] VERSION="7 (Core)"
[2026-03-25 08:42:34] ID="centos"
[2026-03-25 08:42:34] ID_LIKE="rhel fedora"
[2026-03-25 08:42:34] VERSION_ID="7"
[2026-03-25 08:42:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 08:42:34] ANSI_COLOR="0;31"
[2026-03-25 08:42:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 08:42:34] HOME_URL="https://www.centos.org/"
[2026-03-25 08:42:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 08:42:34] 
[2026-03-25 08:42:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 08:42:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 08:42:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 08:42:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 08:42:34] 
[2026-03-25 08:42:34] 2026-03-25 07:41:47,461 | INFO     | **************************************
[2026-03-25 08:42:34] 2026-03-25 07:41:47,964 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2026-03-25 08:42:34] 2026-03-25 07:41:48,253 | INFO     | sufficient remaining disk space (495866347520 B)
[2026-03-25 08:42:34] 2026-03-25 07:41:48,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 08:42:34] 2026-03-25 07:41:48,254 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 08:42:34] 2026-03-25 07:41:48,254 | INFO     | update_server=False
[2026-03-25 08:42:34] 2026-03-25 07:41:48,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 08:42:34] 2026-03-25 07:41:48,258 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 08:42:34] 2026-03-25 07:41:48,544 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-25 08:42:34] 2026-03-25 07:41:48,545 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-25 08:42:34] 2026-03-25 07:41:48,545 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 08:42:34] 2026-03-25 07:41:48,545 | INFO     | will abort loop
[2026-03-25 08:42:34] 2026-03-25 07:41:48,586 | INFO     | all job control threads have been joined
[2026-03-25 08:42:34] 2026-03-25 07:41:48,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 08:42:34] 2026-03-25 07:41:48,684 | INFO     | all data control threads have been joined
[2026-03-25 08:42:34] 2026-03-25 07:41:49,260 | INFO     | [job] retrieve thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:49,273 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:49,448 | INFO     | [payload] validate_post thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:49,530 | INFO     | [payload] failed_post thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:49,551 | INFO     | [job] job monitor thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:49,569 | INFO     | all payload control threads have been joined
[2026-03-25 08:42:34] 2026-03-25 07:41:49,593 | INFO     | [job] control thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:49,683 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:49,691 | INFO     | [data] control thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:50,153 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:50,195 | INFO     | [job] validate thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:50,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 08:42:34] 2026-03-25 07:41:50,265 | INFO     | [data] copytool_out thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:50,376 | INFO     | [data] copytool_in thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:50,576 | INFO     | [payload] control thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:50,589 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:51,202 | INFO     | [job] queue monitor thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:41:52,675 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 08:42:34] 2026-03-25 07:42:18,501 | INFO     | PID=9345 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-25 08:42:34] 2026-03-25 07:42:18,501 | INFO     | .. there are 9 such processes running
[2026-03-25 08:42:34] 2026-03-25 07:42:18,501 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 08:42:34] 2026-03-25 07:42:18,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 08:42:34] 2026-03-25 07:42:18,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 08:42:34] 2026-03-25 07:42:23,761 | INFO     | [monitor] cgroup control has ended
[2026-03-25 08:42:34] 2026-03-25 07:42:24,933 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139709985335104)>', '<ExcThread(monitor, started 139709565097728)>']
[2026-03-25 08:42:34] 2026-03-25 07:42:25,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 08:42:34] 2026-03-25 07:42:25,544 | INFO     | [monitor] control thread has ended
[2026-03-25 08:42:34] 2026-03-25 07:42:29,959 | INFO     | all workflow threads have been joined
[2026-03-25 08:42:34] 2026-03-25 07:42:29,960 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 08:42:34] 2026-03-25 07:42:29,960 | INFO     | traces error code: 0
[2026-03-25 08:42:34] 2026-03-25 07:42:29,960 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 08:42:34] 2026-03-25 07:42:30,327 [wrapper] ==== pilot stdout END ====
[2026-03-25 08:42:34] 2026-03-25 07:42:30,384 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 08:42:34] 2026-03-25 07:42:30,437 [wrapper] pilotpid: 9345
[2026-03-25 08:42:34] 2026-03-25 07:42:30,517 [wrapper] Pilot exit status: 0
[2026-03-25 08:42:34] 2026-03-25 07:42:31,001 [wrapper] pandaids: 7056909755
[2026-03-25 08:42:34] 2026-03-25 07:42:32,020 [wrapper] cleanup supervisor_pilot 26408 9346
[2026-03-25 08:42:34] 2026-03-25 07:42:32,143 [wrapper] Test setup, not cleaning
[2026-03-25 08:42:34] 2026-03-25 07:42:32,220 [wrapper] apfmon messages muted
[2026-03-25 08:42:34] 2026-03-25 07:42:32,294 [wrapper] ==== wrapper stdout END ====
[2026-03-25 08:42:34] 2026-03-25 07:42:32,394 [wrapper] ==== wrapper stderr END ====
[2026-03-25 08:42:34]  *** Error codes and diagnostics ***
[2026-03-25 08:42:34]     "exeErrorCode": 0,
[2026-03-25 08:42:34]     "exeErrorDiag": "",
[2026-03-25 08:42:34]     "pilotErrorCode": 0,
[2026-03-25 08:42:34]     "pilotErrorDiag": "",
[2026-03-25 08:42:34]  *** Listing of results directory ***
[2026-03-25 08:42:34] total 492152
[2026-03-25 08:42:34] -rwx------. 1 boinc boinc     36322 Mar 16 14:17 runpilot2-wrapper.sh
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc    585013 Mar 16 14:19 pilot3.tar.gz
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc      5111 Mar 16 14:25 queuedata.json
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc       100 Mar 24 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 08:42:34] -rwxr-xr-x. 1 boinc boinc      7986 Mar 24 20:54 run_atlas
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc       105 Mar 24 20:54 job.xml
[2026-03-25 08:42:34] -rw-r--r--. 2 boinc boinc 241891819 Mar 24 20:54 EVNT.49135955._000010.pool.root.1
[2026-03-25 08:42:34] -rw-r--r--. 2 boinc boinc     15845 Mar 24 20:54 start_atlas.sh
[2026-03-25 08:42:34] drwxrwx--x. 2 boinc boinc        68 Mar 24 20:54 shared
[2026-03-25 08:42:34] -rw-r--r--. 2 boinc boinc    597553 Mar 24 20:54 input.tar.gz
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc      6391 Mar 24 20:54 init_data.xml
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc         0 Mar 24 20:54 boinc_lockfile
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc      2633 Mar 24 20:54 pandaJob.out
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc       415 Mar 24 20:59 workernode_map.json
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc   1010852 Mar 24 20:59 agis_schedconf.cvmfs.json
[2026-03-25 08:42:34] drwx------. 5 boinc boinc      4096 Mar 24 20:59 pilot3
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc 244850320 Mar 25 08:40 HITS.49176974._000233.pool.root.1
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc       532 Mar 25 08:40 boinc_task_state.xml
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc      1015 Mar 25 08:41 memory_monitor_summary.json
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc   1511579 Mar 25 08:41 agis_ddmendpoints.agis.ALL.json
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc        95 Mar 25 08:41 pilot_heartbeat.json
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc    839356 Mar 25 08:41 log.49176974._000233.job.log.tgz.1
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc      6311 Mar 25 08:41 heartbeat.json
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc        29 Mar 25 08:42 wrapper_checkpoint.txt
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc      8192 Mar 25 08:42 boinc_mmap_file
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc      5066 Mar 25 08:42 pilotlog.txt
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc   5812215 Mar 25 08:42 log.49176974._000233.job.log.1
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc       357 Mar 25 08:42 output.list
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc       620 Mar 25 08:42 runtime_log
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc   6666240 Mar 25 08:42 result.tar.gz
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc      8832 Mar 25 08:42 runtime_log.err
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc       658 Mar 25 08:42 gd7NDmP0MM9n9Rq4apOajLDm4fhM0noT9bVooX4SDm4ktLDm4OA9pm.diag
[2026-03-25 08:42:34] -rw-r--r--. 1 boinc boinc     20672 Mar 25 08:42 stderr.txt
[2026-03-25 08:42:34] HITS file was successfully produced:
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc 244850320 Mar 25 08:40 shared/HITS.pool.root.1
[2026-03-25 08:42:34]  *** Contents of shared directory: ***
[2026-03-25 08:42:34] total 482448
[2026-03-25 08:42:34] -rw-r--r--. 2 boinc boinc 241891819 Mar 24 20:54 ATLAS.root_0
[2026-03-25 08:42:34] -rw-r--r--. 2 boinc boinc     15845 Mar 24 20:54 start_atlas.sh
[2026-03-25 08:42:34] -rw-r--r--. 2 boinc boinc    597553 Mar 24 20:54 input.tar.gz
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc 244850320 Mar 25 08:40 HITS.pool.root.1
[2026-03-25 08:42:34] -rw-------. 1 boinc boinc   6666240 Mar 25 08:42 result.tar.gz
08:42:35 (5578): run_atlas exited; CPU time 167106.584111
08:42:35 (5578): called boinc_finish(0)

</stderr_txt>
]]>

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